Sh_002I04_t000110

Overview
NameSh_002I04_t000110
Unique NameSh_002I04_t000110
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length468
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDoubtful hypothetical protein
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I04contigSh_002I04:114591..116011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I04_g000110Sh_002I04_g000110R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I04_p000110Sh_002I04_p000110R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I04_t000110 ID=Sh_002I04_t000110|Name=Sh_002I04_t000110|organism=R570 Sugarcane cultivar|type=mRNA|length=468bp
ATGAGTACGGCCTCACCTCATCCTTCCCCGACCGCATCCGCAACCCCTGT
GCTAAGGACGGCGGCGCGGACGACCCAGACGACCCCGGCCCCAAGTTCAC
GTCACAGACTAGCTTCCGCATCCACGGGGACACGGAGGTCGCTGACCTCT
TTCGGAAGCTCGGCCTCAACGGTGTGGAGGACATCGCCATCTACCACGGC
TTCCAGCTCCCCGACAGCGGCTTCGCGTTCACCTGCTTCCTCTGCGGCGG
TGCGCTCCACCGCTTTGAGCACGACATCCCCACCACGGTGTTCCTCCCCA
AGCTCCGCGGGGGAACCTGCAGCACCGCGAGCCCGGACCCCCGGACGCCA
CTGTGCGTCGCACCATCAGTGTCCGCGACGACGTCCTACTGGCTGCCTCG
GAGGCACCAAGGAGGAGCCTTTTACCTGTGTGACATTACGAAAGATGCTT
AAGCTTACATGCCACTAA
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protein sequence of Sh_002I04_p000110

>Sh_002I04_p000110 ID=Sh_002I04_p000110|Name=Sh_002I04_p000110|organism=R570 Sugarcane cultivar|type=polypeptide|length=156bp
MSTASPHPSPTASATPVLRTAARTTQTTPAPSSRHRLASASTGTRRSLTS
FGSSASTVWRTSPSTTASSSPTAASRSPASSAAVRSTALSTTSPPRCSSP
SSAGEPAAPRARTPGRHCASHHQCPRRRPTGCLGGTKEEPFTCVTLRKML
KLTCH*
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mRNA from alignment at Sh_002I04:114591..116011-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I04_t000110 ID=Sh_002I04_t000110|Name=Sh_002I04_t000110|organism=R570 Sugarcane cultivar|type=mRNA|length=1421bp|location=Sequence derived from alignment at Sh_002I04:114591..116011- (R570 Sugarcane cultivar)
ATGAGTACGGCCTCACCTCATCCTTCCCCGACCGCATCCGCAACCCCTGT GCTAAGGACGGCGGCGCGGACGACCCAGACGACCCCGGCCCCAAGTTCAC GTCACAGACTAGCTTCCGCATCCACGGGGACACGGAGGTCGCTGACCTCT TTCGGAAGCTCGGCCTCAACGGTGTGGAGGACATCGCCATCTACCACGGC TTCCAGCTCCCCGACAGCGGCTTCGCGTTCACCTGCTTCCTCTGCGGCGG TGCGCTCCACCGCTTTGAGCACGACATCCCCACCACGGTGTTCCTCCCCA AGCTCCGCGGGGGAACCTGCAGCACCGCGAGCCCGGACCCCCGGACGCCA CTGTGCGTCGCACCATCAGTGTCCGCGACGACGTCCTACTGGCTGCCTCG GAGGCACCAAGGAGGAGCCTTTTACCTGTGTGACATTACGAAAGATGCTT AAGCTTACATGCCACTAAAAAATTCAAACACACCCCGATGCCATGACACT TTACTTTTTTTTTTTTGTCTCCTAAGTCATTTCATTCATATTCACGGCTA ACGGTGGCTAACGGAACTGCAAAATGAATGACTTAAATGCCCTCGGGATA GAGAAGCGAGATAAAACTTTGTTTTCCCCTGTGCCACTCCCTTGATGGCT TGCTGAGTGTTTTGGCACCAAATTGATTGTCATTGACCATTCTTGACTGT AATAATTTAATTAGTATTTCAATTCTTTGTAATATCTTTTTAGTTTTTGA ATATAAAAAATCTCCAAAATCTCAAAATCCGGTAGATAGAAAATTGTAAA TACTTTTATGCGCAGATGACAGCATGTCAAGGTTCGACCAACAAAATCTC AGATTTATTATCTCTGTCTCACAAAGTCACACACAATCAGCCTGCATTCA CATAAACAACGACAGAAAACTGCAGACTATTGTTGCCATCTGAGTGTACA TACACACTTCTCTTCTTTGTATTCTTGAATGGTTATTGTGATAACAACCA TACTAATCAAAATTTTCTTGATAACATGATACCCGGTGGTGGCATTAGTG ATCAGAGATAGCCTTTTTGTTTCATTGTACATCAGGTATAAATACATTTG TAATTGTGACTATACGGTTACTCATTTTTAATATACGAACTGACATTGCC GAAGCCAGACCGGAGCCGCTGGTGCGACCGCGTCCACGCCAGGAGCCAGT GGCGGATCCACGGCCCGGGCTGCCCGGGCAGCAGCCCCCCCGGCAGCTGG ATTTTACATGTAAAGCACTGTAGCTTAGCCTCTAATCCACCATTAATCAA CAGCTTAAAGTCTAATCCTTCATTATTTAGCCCCCCCCGTTTGCTTCATC CTGGATCCGCCCCTGCCAGGAGCCGCTGCTTCTGCGGCTGCACCGTGTCG ACCTCGCCGCCACCGCACACG
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Coding sequence (CDS) from alignment at Sh_002I04:114591..116011-

>Sh_002I04_t000110 ID=Sh_002I04_t000110|Name=Sh_002I04_t000110|organism=R570 Sugarcane cultivar|type=CDS|length=468bp|location=Sequence derived from alignment at Sh_002I04:114591..116011- (R570 Sugarcane cultivar)
ATGAGTACGGCCTCACCTCATCCTTCCCCGACCGCATCCGCAACCCCTGT
GCTAAGGACGGCGGCGCGGACGACCCAGACGACCCCGGCCCCAAGTTCAC
GTCACAGACTAGCTTCCGCATCCACGGGGACACGGAGGTCGCTGACCTCT
TTCGGAAGCTCGGCCTCAACGGTGTGGAGGACATCGCCATCTACCACGGC
TTCCAGCTCCCCGACAGCGGCTTCGCGTTCACCTGCTTCCTCTGCGGCGG
TGCGCTCCACCGCTTTGAGCACGACATCCCCACCACGGTGTTCCTCCCCA
AGCTCCGCGGGGGAACCTGCAGCACCGCGAGCCCGGACCCCCGGACGCCA
CTGTGCGTCGCACCATCAGTGTCCGCGACGACGTCCTACTGGCTGCCTCG
GAGGCACCAAGGAGGAGCCTTTTACCTGTGTGACATTACGAAAGATGCTT
AAGCTTACATGCCACTAA
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