Sh_002I17_t000020

Overview
NameSh_002I17_t000020
Unique NameSh_002I17_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length2169
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:9194..13859
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000020Sh_002I17_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000020Sh_002I17_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000020 ID=Sh_002I17_t000020|Name=Sh_002I17_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2169bp
ATGAATGTGCCCACTTATACATCTTTTGCCATATTGCCAGCTGCTAGGAA
CTTGCTGACTAGGCACGTCAACTTCTTGATTGCCAATTTGCCATACAACA
CCAAGTTTTGGATAGATTTGAGCCTTTTGACATTTATATGCAAAGAAAGA
ATCAGGACTGCAAAGACCACAAGGAACAAGGTGGGGATTGATTGCACAAG
AGGTGTGAGTAGGGAGCAGAGAGCCATAAACAGAAGGAACAAACTTGAGT
CATCACTGGTTTCAAGTCGGACTTATGTCCCTAGTGGTAACAAGAGAGCC
TGGAACCGCAACATAAAATGGATGCTAGAACGTCGTGCGGCTAATGAGGC
GTATTATAATTTTGAGGAGAATCTATCTGCTATTGCAGTGCAACGATTCG
GTGAACCTTTTCCTGATAGAGAAGATCCAAATGTTGCTTTTGAGGAGAGG
TCATTTGGTGAAATAGTCAAACCTGGTCAATTAACTTATCCAATCAGTAC
TAGTTATGCTGTGGATTTGTCTTCCTTGGTCGTCTCGATTGCTTTGTTTG
ATGGAGATAAGATGTTATTTGCATGCTCGGGCATACCTATACCTCACGGA
AGAACTAGACAAAGCCTAACAAGATTTGTGACATCAGCACATTTGGTTAC
ACAATTCAACAAGAATAGAAATAAAGATGATAAGTTGAGGGTTGCAGTGC
GCCTTCCTAATAATACAGGTACCGATGGGTTCTTAGGACTATATGATAAA
GACATTGCTATCGTCACATGCTTGGGCTTCCTAGGAGTCCGTCCTATAGA
TCTGGATCATAAGGCAAAACCTTTCCCTGGTGATAGTTTGAAAGCTGCTG
GGCGTGCCTTCAACTCTGGCAGTTTGATGGCCATGCGTGGATCTCTGTAT
CAGAAACGCCCCCTCAAACACCTCGAACGCCTCAACACCTGGGTTTCTGA
TAGTCAAGATATCTCTAAGGCTGTACTTGGAGGGCCACTTCTGGGGTGGG
ATAATAAAATTGTCGGGATGAGCTTAGATATTTATGACCCTGGTGATGCA
AATTTGAGATACACCTTCCTACCAATGGACTTACTTTGCAAACGTTTGAA
GCATTTTCAGATACTCAATCCTGAAAAACTACACTTCCGTGGATATACGT
TGCCTAAAGATGTATCAAGTGTAGTTCCTTCAGGGTTTATGCAAACTATT
TGCAGGTTAAAGTCCTGTGACTATCCCATTCCACCACCGCTTGTGCTCGA
ATTCAATGGGCAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTAC
TTCCTTGGAAAGGGTATCCCTTTGGTCATACACCCGGTGGCTCTGGGGAG
CGCGTCTGGAATCAACTTCCAAAAGATGTTGTGACAGATGTATCCCGTCG
TGTTGTCTCACTTGCTTCATTCAATGGGTATGTGAGATCTTTTGCATGCA
CAGGCTTGCTTATAAAATGGCATGGAAGCAAAGCTAAGCACACTGTCATC
CTGACTTCAGCCAGTTTGGTTAGAGGTCGTTGTAATGAGGATAGCATTGA
TAATAGCTTGACGATTGAGGTGTTTCTCCCACCGAATCAACGTGCTGGTG
GGACATTGGAATTTTATAATTTAGACTATAACATTGCTATTGTCAGTCTC
AAGAAGAATTTCAGTGCTATTTGTCCGGACGACATCTTTGCTAAAAGTGC
ACAAAACACATCTAAAAAGGTTGTAGCTGTAGGGCGTGATGCTAAATTTG
GTATATTGATGGCCGCAAGTGGTGAAGTGAAGCGTGGAAACAAGGGTTGC
AAACTTGATTGCAAAGATGTTCAGCTGTCTACTTGTAAAATCAAGAAGGC
TGGGATTGGAGGCCCGCTTATTAATCTTGATGGGAGTTTTGTTGGCATGA
ACTTCTACGATGGAAGTGGTGTAACTCCTTTCTTACCAAGGCACAAGATT
GTTGAAGTTCTAAGTGGAGCGGATTCTTTGCCATCAGAATGTGGATATAA
CCATCCTGTGCCTGTCAATGTCATTGGTGGGACAAAGAAGCAGATTCAGA
AAAACAGACCTTTGGTGCTGTCGCTGTACTGTTTATCATACTTCGACTGT
TGTAACTTACAAGTCGGCTCGAGAGGCGATTACGTCACAAGCACTGTGCC
GTTGGTGCTAATCAGCTAG
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protein sequence of Sh_002I17_p000020

>Sh_002I17_p000020 ID=Sh_002I17_p000020|Name=Sh_002I17_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=723bp
MNVPTYTSFAILPAARNLLTRHVNFLIANLPYNTKFWIDLSLLTFICKER
IRTAKTTRNKVGIDCTRGVSREQRAINRRNKLESSLVSSRTYVPSGNKRA
WNRNIKWMLERRAANEAYYNFEENLSAIAVQRFGEPFPDREDPNVAFEER
SFGEIVKPGQLTYPISTSYAVDLSSLVVSIALFDGDKMLFACSGIPIPHG
RTRQSLTRFVTSAHLVTQFNKNRNKDDKLRVAVRLPNNTGTDGFLGLYDK
DIAIVTCLGFLGVRPIDLDHKAKPFPGDSLKAAGRAFNSGSLMAMRGSLY
QKRPLKHLERLNTWVSDSQDISKAVLGGPLLGWDNKIVGMSLDIYDPGDA
NLRYTFLPMDLLCKRLKHFQILNPEKLHFRGYTLPKDVSSVVPSGFMQTI
CRLKSCDYPIPPPLVLEFNGQLLNHFEECFGELLPWKGYPFGHTPGGSGE
RVWNQLPKDVVTDVSRRVVSLASFNGYVRSFACTGLLIKWHGSKAKHTVI
LTSASLVRGRCNEDSIDNSLTIEVFLPPNQRAGGTLEFYNLDYNIAIVSL
KKNFSAICPDDIFAKSAQNTSKKVVAVGRDAKFGILMAASGEVKRGNKGC
KLDCKDVQLSTCKIKKAGIGGPLINLDGSFVGMNFYDGSGVTPFLPRHKI
VEVLSGADSLPSECGYNHPVPVNVIGGTKKQIQKNRPLVLSLYCLSYFDC
CNLQVGSRGDYVTSTVPLVLIS*
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mRNA from alignment at Sh_002I17:9194..13859-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000020 ID=Sh_002I17_t000020|Name=Sh_002I17_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=4666bp|location=Sequence derived from alignment at Sh_002I17:9194..13859- (R570 Sugarcane cultivar)
ATGAATGTGCCCACTTATACATCTTTTGCCATATTGGTTTGGTTGCTTTC TGTTATGTTTGGATTTTTTTTTTGTTCTGTGCCTTTTTCTGTCAATCTTA GCCAGCTGCTAGGAACTTGCTGACTAGGCACGTCAACTTCTTGATTGCCA ATTTGCCATACAACACCAAGTTTTGGATAGATTTGAGCCTTTTGACATTT ATATGCAAAGAAAGAATCAGGTCAATCTAGTACTGATTTTGAGAACATGT TTATTCATACTGTTATTGTTGATAGTATTATCAATGAACCTAATATTTTA AGGTTGACAAGGTGCTTCATTGTTTTGATTTCGAGGGGGTGAGGGTGGGT TATAAGCTTACAAAAGGGTCTAAGTTACTCTACTAAGCATTTGCATTTAT TTTCTGCTTCAGGACTGCAAAGACCACAAGGAACAAGGTGGGGATTGATT GCACAAGAGGTGTGAGTAGGGAGCAGAGAGCCATAAACAGAAGGAACAAA CTTGAGTCATCACTGGTTTCAAGTCGGACTTATGTCCCTAGTGGTAACAA GAGAGCCTGGAACCGCAACATAAAATGGATGCTAGAACGTGAGTAGTTGA TTTGAATTTGCTGGTTCTTTCTTTTGTGGTGCATATTGCTCTAGCAAACC ACTCAGCTGTGGTGTATCATGTTTATTAATCAGGTCGTGCGGCTAATGAG GCGTATTATAATTTTGAGGAGAATCTATCTGCTATTGCAGTGCAACGATT CGGTGAACCTTTTCCTGATAGAGAAGATCCAAATGTTGCTTTTGAGGAGA GGTCATTTGGTGAAATAGTCAAACCTGGTCAATTAACTTATCCAATCAGT ACTAGTTATGCTGTGGATTTGTCTTCCTTGGTCGTCTCGATTGCTTTGTT TGATGGTGATTGTGCTACTATACTTTTCAATTTTCCTATAAATTGCATTT AGTCATCACTTGTTATTTAAATCATGATATTGTCCAGGAGATAAGATGTT ATTTGCATGCTCGGGCATACCTATACCTCACGGAAGAACTAGACAAAGCC TAACAAGATTTGTGACATCAGCACATTTGGTTACACAATTCAACAAGAAT AGAAATAAAGATGATAAGTTGAGGGTTAGTGCTGCTAATCACTGTGTTCC TTGATTTTTCTTTGTATATTCAAGCTAATTGTGAACATACTGAGCTTGTG CTTGTGCACTGCTTTTATTTCTGTAGGTTGCAGTGCGCCTTCCTAATAAT ACAGGTACCGATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGT CACATGCTTGGGCTTCCTAGGAGTCCGTCCTATAGATCTGGATCATAAGG CAAAACCTTTCCCTGGTGATAGTTTGAAAGCTGCTGGGCGTGCCTTCAAC TCTGGCAGTTTGATGGCCATGCGTGGATCTCTGTATCAGAAACGCCCCCT CAAACACCTCGAACGCCTCAACACCTGGGTTTCTGATAGTCAAGATATCT CTAAGGTATACTGTTGATTTATTTATTTGTAACTTTGTGGCATGATGGAA AACATGGAACACATAACTGCATTATGTTATTGCTGGTCTAAAGTATCATT GTGTGCATTGAAGTAAATCCTTTCTAAACCTACCACTTTGCTTTTGTTCT AGGCTGTACTTGGAGGGCCACTTCTGGGGTGGGATAATAAAATTGTCGGG ATGAGCTTAGATATTTATGACCCTGGTGATGCAAATTTGAGATACACCTT CCTACCAATGGACTTACTTTGCAAACGTTTGAAGCATTTTCAGATACTCA AGTATGTCTTCTACACTTACAATATTTATTGACTATTTCTTCAGTTAACC TGATTCATATTTGTTCCAAACCGTCTCTCCTAATCGACTTCCTGTTTAAG GTAAGCCATTTTTACTAACAGCATTGGAGACTTAGGAGTTTTCACATGGT AACCTTTGGATTGAAAATAATTTGGTTCTTCTTACCCCTCTCTACTGAAA CCAGTACCATTGCCAGATCTTATGATGCTAACTTAGTGCCCATGCTTAAT GTTTTGGTCTAAATTAGGAAGAATTAAACAATTCTTTGTGGCTATATGGA CAATGTAACTTATATTTGTGACATGAATATGCTCAATCCTCGCATCTTTT GTTGAATATTTATGCCTGATTCCAAGTCATTATTTCATACCTTTATTTCT TTCACAAGACAAGATTAGATTCATGTGTTGGTATGATTGGATTTTTTTTC CCTGTGTAGTTCCTATGTTTTATTTTGTCATAACGAGTCAACTATGTTTT ATTGCAGTCCTGAAAAACTACACTTCCGTGGATATACGTTGCCTAAAGAT GTATCAAGTGTAGTTCCTTCAGGTGTGAACAATACTACAAGCTATCTTCT AAAATGTTGCCTATGTATCATTGTGCACAGAATACAATGTTACCAGTATC ACACATATCATCTTGAGGACTAATAATGATCAAAATATTGCATCAGGGTT TATGCAAACTATTTGCAGGTTAAAGTCCTGTGACTATCCCATTCCACCAC CGCTTGTGCTCGAATGTAAGTGTTGCTTTTGATATTGCTGTCATCTCCCT TGTGCCTTTTTGCAGTTCACTTCTGATCTTCGTTCTTTAACTAGTCAATG GGCAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTACTTCCTTGG AAAGGGTATCCCTTTGGTCATACACCCGGTGGCTCTGGGGAGCGCGTCTG GAATCAACTTCCAAAAGATGTTGTGACAGATGTATCCCGTCGTGTTGTCT CACTTGCTTCATTCAATGGTGATTTTTCCAGCTGTGTGCTCCTTACTTTT TTGTGCTAGTATTTTATCTTCACTAACTAATGATTAAACTTATAATGTGT AGGGTATGTGAGATCTTTTGCATGCACAGGCTTGCTTATAAAATGGCATG GAAGCAAAGCTAAGCACACTGTCATCCTGACTTCAGCCAGTTTGGTTAGA GGTCGTTGTAATGAGGATAGCATTGATAATAGCTTGACGGTTGGTGCTCC TTAGTCCTTATCCTTACCTTTGGTCTTTTAAGTTTAATGATGGTTTGCTG AGCTCGCTTTCTCATTGCAGATTGAGGTGTTTCTCCCACCGAATCAACGT GCTGGTGGGACATTGGAATTTTATAATTTAGACTATAACATTGCTATTGT CAGTCTCAAGAAGAATTTCAGTGCTATTTGTCCGGACGACATCTTTGCTA AAAGTGCACAAAACACATCTAAAAAGGTTGTAGCTGTAGGGCGTGATGCT AAATTTGGTATATTGATGGCCGCAAGTGGTGAAGTGAAGCGTGGAAACAA GGGTTGCAAACTTGATTGCAAAGATGTTCAGCTGTCTACTTGTAAAATCA AGAAGGTACTGTGGTGAATCTCTCTTACTGTTCTTTTATATGATAACCAG TTTAATCATATTGCATGTACTAAACTCATTAGGAATTATTACAAGTTTCC CAGTAACCTTGGGCCTTTTTTTAAACTAGGCTGGGATTGGAGGCCCGCTT ATTAATCTTGATGGGAGTTTTGTTGGCATGAACTTCTACGATGGAAGTGG TGTAACTCCTTTCTTACCAAGGCACAAGATTGTTGAAGTTCTAAGTGGAG CGGATTCTTTGCCATCAGAATGGTATTATAATTTCATCTCGATGCTAACT GGTAGGCATGACACTTATTTTACAAACTTTGATTTTTTTTTTGTTTGATG ACAGTGGATATAACCATCCTGTGCCTGTCAATGTCATTGGTGGGACAAAG AAGCAGATTCAGAAAAACAGGTATTTCTTTCGGTTTTCGCATTGCCACGT GTTTCTGTTTGCTTAGACTATTTTATTCCACAGCCAACTTACATAGGGAC AAAAACACATATTGGATGACAGGTGGCCAGTGCCCGAGCCATATTGGTAT CATGGCGCACTTGATGCGAGTGTTCTTGATCTAGGCAAGCATATTGGGCG GCGTCTTAATTAGACATCACATTGCTGGAGTATCTAATTAACCTTGTTCT GCTTATCAAGCTAGTATCTAACAAACCTTTGGTGCGGTTGCCGTGCTGTT TATATCTTACTAGTATTTGACAGACCTGTCTAGGATATATGCAAGTTAGA CTTGTGTTGTAGGGTTATTTATGTGACTTTGCCTCTTGTAACTTACAAGT TGGTTCAAGGCTCTCATGGACCTTGTTATGCCTCATCTAACAGACCTTTG GTGCTGTCGCTGTACTGTTTATCATACTTCGACTGTTGTAACTTACAAGT CGGCTCGAGAGGCGATTACGTCACAAGCACTGTGCCGTTGGTGCTAATCA GCTAGTTCCTGCTATGGTAATCTCCTGTGCTTTCCTCGTGTTGGTGCTAG TAATCAGCGAGCCCCTGCTACGGTAAGAAAGTGGGTAGATGCTAGTTCCT GCTATGGTAATCTCCTGTGCTTTCCTCGTGTTGGTGCTAGTAATCAGCGA GCCCCTGCTATGGTAAGAAAGTGGGTAGATGCTGGTAGCAGGGTTAGCAA TTCTTCGTCCAAATGAGTTGCCATGTTTCTTTCTTTTGTTCAGGTTGTAT ATTGAGGCCATCTCTCATGGATTAATTTCGTGGATTTTGTTTATGGTTGT TGGGAACTGATAAGCT
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Coding sequence (CDS) from alignment at Sh_002I17:9194..13859-

>Sh_002I17_t000020 ID=Sh_002I17_t000020|Name=Sh_002I17_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=2169bp|location=Sequence derived from alignment at Sh_002I17:9194..13859- (R570 Sugarcane cultivar)
ATGAATGTGCCCACTTATACATCTTTTGCCATATTGCCAGCTGCTAGGAA
CTTGCTGACTAGGCACGTCAACTTCTTGATTGCCAATTTGCCATACAACA
CCAAGTTTTGGATAGATTTGAGCCTTTTGACATTTATATGCAAAGAAAGA
ATCAGGACTGCAAAGACCACAAGGAACAAGGTGGGGATTGATTGCACAAG
AGGTGTGAGTAGGGAGCAGAGAGCCATAAACAGAAGGAACAAACTTGAGT
CATCACTGGTTTCAAGTCGGACTTATGTCCCTAGTGGTAACAAGAGAGCC
TGGAACCGCAACATAAAATGGATGCTAGAACGTCGTGCGGCTAATGAGGC
GTATTATAATTTTGAGGAGAATCTATCTGCTATTGCAGTGCAACGATTCG
GTGAACCTTTTCCTGATAGAGAAGATCCAAATGTTGCTTTTGAGGAGAGG
TCATTTGGTGAAATAGTCAAACCTGGTCAATTAACTTATCCAATCAGTAC
TAGTTATGCTGTGGATTTGTCTTCCTTGGTCGTCTCGATTGCTTTGTTTG
ATGGAGATAAGATGTTATTTGCATGCTCGGGCATACCTATACCTCACGGA
AGAACTAGACAAAGCCTAACAAGATTTGTGACATCAGCACATTTGGTTAC
ACAATTCAACAAGAATAGAAATAAAGATGATAAGTTGAGGGTTGCAGTGC
GCCTTCCTAATAATACAGGTACCGATGGGTTCTTAGGACTATATGATAAA
GACATTGCTATCGTCACATGCTTGGGCTTCCTAGGAGTCCGTCCTATAGA
TCTGGATCATAAGGCAAAACCTTTCCCTGGTGATAGTTTGAAAGCTGCTG
GGCGTGCCTTCAACTCTGGCAGTTTGATGGCCATGCGTGGATCTCTGTAT
CAGAAACGCCCCCTCAAACACCTCGAACGCCTCAACACCTGGGTTTCTGA
TAGTCAAGATATCTCTAAGGCTGTACTTGGAGGGCCACTTCTGGGGTGGG
ATAATAAAATTGTCGGGATGAGCTTAGATATTTATGACCCTGGTGATGCA
AATTTGAGATACACCTTCCTACCAATGGACTTACTTTGCAAACGTTTGAA
GCATTTTCAGATACTCAATCCTGAAAAACTACACTTCCGTGGATATACGT
TGCCTAAAGATGTATCAAGTGTAGTTCCTTCAGGGTTTATGCAAACTATT
TGCAGGTTAAAGTCCTGTGACTATCCCATTCCACCACCGCTTGTGCTCGA
ATTCAATGGGCAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTAC
TTCCTTGGAAAGGGTATCCCTTTGGTCATACACCCGGTGGCTCTGGGGAG
CGCGTCTGGAATCAACTTCCAAAAGATGTTGTGACAGATGTATCCCGTCG
TGTTGTCTCACTTGCTTCATTCAATGGGTATGTGAGATCTTTTGCATGCA
CAGGCTTGCTTATAAAATGGCATGGAAGCAAAGCTAAGCACACTGTCATC
CTGACTTCAGCCAGTTTGGTTAGAGGTCGTTGTAATGAGGATAGCATTGA
TAATAGCTTGACGATTGAGGTGTTTCTCCCACCGAATCAACGTGCTGGTG
GGACATTGGAATTTTATAATTTAGACTATAACATTGCTATTGTCAGTCTC
AAGAAGAATTTCAGTGCTATTTGTCCGGACGACATCTTTGCTAAAAGTGC
ACAAAACACATCTAAAAAGGTTGTAGCTGTAGGGCGTGATGCTAAATTTG
GTATATTGATGGCCGCAAGTGGTGAAGTGAAGCGTGGAAACAAGGGTTGC
AAACTTGATTGCAAAGATGTTCAGCTGTCTACTTGTAAAATCAAGAAGGC
TGGGATTGGAGGCCCGCTTATTAATCTTGATGGGAGTTTTGTTGGCATGA
ACTTCTACGATGGAAGTGGTGTAACTCCTTTCTTACCAAGGCACAAGATT
GTTGAAGTTCTAAGTGGAGCGGATTCTTTGCCATCAGAATGTGGATATAA
CCATCCTGTGCCTGTCAATGTCATTGGTGGGACAAAGAAGCAGATTCAGA
AAAACAGACCTTTGGTGCTGTCGCTGTACTGTTTATCATACTTCGACTGT
TGTAACTTACAAGTCGGCTCGAGAGGCGATTACGTCACAAGCACTGTGCC
GTTGGTGCTAATCAGCTAG
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