Sh_002I17_t000030

Overview
NameSh_002I17_t000030
Unique NameSh_002I17_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length234
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Putative wpk4 protein kinase
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:21569..21802
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000030Sh_002I17_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000030Sh_002I17_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000030 ID=Sh_002I17_t000030|Name=Sh_002I17_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=234bp
ATGATCCGCCATGGCGACTACCATTGCCCGCCGTGCTTCAGTACCGGCCT
CGTTCGCCGCATCATTAGCCCGACCCGGCGCAAGAAGGACTTGAGACCCC
TCGAGCTATGCGACTCTGACTCTGATTCTAACGACGAGTCGACGGCGTCA
TCTACGTCATCGGGGGATACAGCCTCCCCAATGGCATGCTCCATGCATAC
CTCGGTGTCGGCACCGTCACTAACCACGCTCTAG
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protein sequence of Sh_002I17_p000030

>Sh_002I17_p000030 ID=Sh_002I17_p000030|Name=Sh_002I17_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=78bp
MIRHGDYHCPPCFSTGLVRRIISPTRRKKDLRPLELCDSDSDSNDESTAS
STSSGDTASPMACSMHTSVSAPSLTTL*
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mRNA from alignment at Sh_002I17:21569..21802+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000030 ID=Sh_002I17_t000030|Name=Sh_002I17_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=234bp|location=Sequence derived from alignment at Sh_002I17:21569..21802+ (R570 Sugarcane cultivar)
ATGATCCGCCATGGCGACTACCATTGCCCGCCGTGCTTCAGTACCGGCCT CGTTCGCCGCATCATTAGCCCGACCCGGCGCAAGAAGGACTTGAGACCCC TCGAGCTATGCGACTCTGACTCTGATTCTAACGACGAGTCGACGGCGTCA TCTACGTCATCGGGGGATACAGCCTCCCCAATGGCATGCTCCATGCATAC CTCGGTGTCGGCACCGTCACTAACCACGCTCTAG
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Coding sequence (CDS) from alignment at Sh_002I17:21569..21802+

>Sh_002I17_t000030 ID=Sh_002I17_t000030|Name=Sh_002I17_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=234bp|location=Sequence derived from alignment at Sh_002I17:21569..21802+ (R570 Sugarcane cultivar)
ATGATCCGCCATGGCGACTACCATTGCCCGCCGTGCTTCAGTACCGGCCT
CGTTCGCCGCATCATTAGCCCGACCCGGCGCAAGAAGGACTTGAGACCCC
TCGAGCTATGCGACTCTGACTCTGATTCTAACGACGAGTCGACGGCGTCA
TCTACGTCATCGGGGGATACAGCCTCCCCAATGGCATGCTCCATGCATAC
CTCGGTGTCGGCACCGTCACTAACCACGCTCTAG
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