Sh_002I17_t000040

Overview
NameSh_002I17_t000040
Unique NameSh_002I17_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length2148
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:22696..26595
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000040Sh_002I17_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000040Sh_002I17_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000040 ID=Sh_002I17_t000040|Name=Sh_002I17_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=2148bp
ATGAACTTGCTGCCTATGTTGACTACAAAGACCACGAGGAACAAGCGGGG
GATTGACTGCACAAGAGGTGTGAGTAAGGAGCAGAGAGCCATAAACAGAA
GGAACAAACTCGAGTCATCACTGGTTTCAAGTCGGAGTTATGTCCCTAGT
GGTAACAAGAGAGCCTGGAACCACAACGTAAAATGGATGCTAGAACGTCA
TGCGGCTAATACGGCGTACCGTAATTTTGAGGAGAATATATCTGCTATTG
CAGTGCAACGATTCGGCGAAACTTTTCGTGATAGAGAAGGTTCAAACGTT
GCTTTTGAGGAGAGGTCATTTGGTGATATAGTCAAACCTGGTGACATAAC
TTATCCAACCAGCAGTAATTATGCTGTGGATTTGTCTTCCTTGGTTGTCT
CGCTCGCTTTGTTTGATGGAGATAAGATGTTATTTGCATGCTCGGGCATA
CCTATACCGCATGGAAGAACTAGACAAAGCCTAACAAGATTTGTGACATC
AGCACATTTGGTTACACAATTCAACGAGAATAGAAATAAAGATGATAAGT
TGAGGGTTGCAGTGCGCCTTCCTAATAATACAGCTACTGATGGGTTCTTA
GGACTATATGATAAAGACATTGCTATCGTCACATGCTTGGGCTTCCTAGG
AGTCCATCCTATAGATCTGGATCTTAACACAAGACCTCACCCTTTTGATA
GTGTGCAAGCTGCTGGGCGTGCCTTCAACTCTGCCAGTTTGATGGCCATG
CGTGGATCTCTGTATCAGAAACGCTGCCTCAAAAACCTCGACCACATCAA
CACCTGGGTTTTTGATAGTCAAGATATCTATAAGGCTGTACTTGGAGGGC
CACTTCTGGGGTGCGATAATAAAATTCTCGTCATGAACTTAGATATTTAT
GACCCTGGTGATGGAATTTTGAGATGCACCTTACTATCAATGGACTTACT
TTGCAAACGCTTGAAGCATTTTCAGATACTCAATCTTGAAAAACTACACT
TCTGTGGATATATGTTGCCTAAAGAAGTATCAAGTGTAGTTCCTTCAGGT
CTGAACAATACTGCAAGCCATCTTCTAAAATGTTGCCTATGTATCATTGT
GCGCAGAATACTATGTTGCCAGTATCACACATATCATCTGAGGACTAACA
GTAATCTCAATATTGCATCAGGATTTATGCAAATTATTTGCAGGTTAAAG
TCAAAAGGGTATCCCATTCCACCACCACTTGTGCTCAAATCCAATGGGCA
GTTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTACTTCCTTGGAAAG
GGTTTCCCTATGGTGATCCACCCGGTGTCTCTAGAGACCGTGTCTGGAAT
GAACTACCGAAAGAAGTTGTGACAGATGTATCCCGTCGTGTTGTCTCACT
TGCTTCATTCAATGGTGATTTTTCCAGTTGTGTCTCCTTACTTGTCTGTG
CCACTAGGTATGTGAGATCTTTTGCATGCACAGGCTTGCTTATAAAGTGG
CATGGAAGCAAAGCTAAGCACACAGTCATCCTGACTTCAGCCAGTTTGGT
TAGAGGTTGTTGTAAAGAGGATAGCATTGATAATAGCTTGACGATTGAGG
TGTTTCTCCCACCGAATCAACGTGCTGGTGAGACATTGGAATTTTATAAT
TTAGACTGTAACATTGCTATTGTCAGTCTCAAGAAGAATTTCAATGCTAT
TTGTCCGGACTACATCTTCATTGAAAGTGCACAAAACTCATCTAAAAAAG
TTGTAGCTATAGGGCGTGATGCTAAATTTGGTATATTAATGGCCGCAAGT
GGTGAAATGATGCCTGTAAACAAGAGTTGCGAACTTGATTGCAAAGATGC
TGGGATTGGAGGCCCGCTTATTAATCTTGATGGGAGTTTTGTTGGCATGA
ACTTCTATGATGGAAGCGGTGTAACTCCTTTCTTACCAAGGCACAAGATT
GTTAAAGTTCTAAGTGGAGTGAATTCTTTACCATCAGAATGTGGATATAA
CCATCCTATGCCTGTCAATGTTATTGGTGGGACAAAGAAGGGGATTCAGA
AAAACAGGTGGCCGGTGCCCGAGCCATATTGGTATCATGGCGCACTTGAT
GCGAGTGTTCATGATCTAGGCAAACATATTGGGCGGCGTCTTAATTAG
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protein sequence of Sh_002I17_p000040

>Sh_002I17_p000040 ID=Sh_002I17_p000040|Name=Sh_002I17_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=716bp
MNLLPMLTTKTTRNKRGIDCTRGVSKEQRAINRRNKLESSLVSSRSYVPS
GNKRAWNHNVKWMLERHAANTAYRNFEENISAIAVQRFGETFRDREGSNV
AFEERSFGDIVKPGDITYPTSSNYAVDLSSLVVSLALFDGDKMLFACSGI
PIPHGRTRQSLTRFVTSAHLVTQFNENRNKDDKLRVAVRLPNNTATDGFL
GLYDKDIAIVTCLGFLGVHPIDLDLNTRPHPFDSVQAAGRAFNSASLMAM
RGSLYQKRCLKNLDHINTWVFDSQDIYKAVLGGPLLGCDNKILVMNLDIY
DPGDGILRCTLLSMDLLCKRLKHFQILNLEKLHFCGYMLPKEVSSVVPSG
LNNTASHLLKCCLCIIVRRILCCQYHTYHLRTNSNLNIASGFMQIICRLK
SKGYPIPPPLVLKSNGQLLNHFEECFGELLPWKGFPYGDPPGVSRDRVWN
ELPKEVVTDVSRRVVSLASFNGDFSSCVSLLVCATRYVRSFACTGLLIKW
HGSKAKHTVILTSASLVRGCCKEDSIDNSLTIEVFLPPNQRAGETLEFYN
LDCNIAIVSLKKNFNAICPDYIFIESAQNSSKKVVAIGRDAKFGILMAAS
GEMMPVNKSCELDCKDAGIGGPLINLDGSFVGMNFYDGSGVTPFLPRHKI
VKVLSGVNSLPSECGYNHPMPVNVIGGTKKGIQKNRWPVPEPYWYHGALD
ASVHDLGKHIGRRLN*
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mRNA from alignment at Sh_002I17:22696..26595-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000040 ID=Sh_002I17_t000040|Name=Sh_002I17_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=3900bp|location=Sequence derived from alignment at Sh_002I17:22696..26595- (R570 Sugarcane cultivar)
ATGAACTTGCTGCCTATGTTGTCACTTGTTGATTGCCAATTTGCCATACA ACACCAAGTTCTGGATAGATTTGAGCCTTTTCTACATTTAATATGCAAAG AAAGAATCAGGTCAATCTAGTACTGATTTTGAGCACATGTTTCTTCATAG TGTTATTGTTGATAGTATTATCAATGAACCTAATATTTTAAGGTTGTCAA GGTGCTTCAGTGTTTTGATTTTGATTTTTTTTGGGGTGGCGGTGGGTATT ATAAGCTTACAAAAGGGTCTTAGTTACTCTACTAAGCATTTGCATTTATT TTCTGCTTCAGGACTACAAAGACCACGAGGAACAAGCGGGGGATTGACTG CACAAGAGGTGTGAGTAAGGAGCAGAGAGCCATAAACAGAAGGAACAAAC TCGAGTCATCACTGGTTTCAAGTCGGAGTTATGTCCCTAGTGGTAACAAG AGAGCCTGGAACCACAACGTAAAATGGATGCTAGAACGTGAGTAGTTGAT TTGAATTTGCTGCTTCTTTCTTTTGTGGCGCATATTGCTCTAGCAAACCC CTCAGGTGTGGTGTATCATGTTTATTTATCAGGTCATGCGGCTAATACGG CGTACCGTAATTTTGAGGAGAATATATCTGCTATTGCAGTGCAACGATTC GGCGAAACTTTTCGTGATAGAGAAGGTTCAAACGTTGCTTTTGAGGAGAG GTCATTTGGTGATATAGTCAAACCTGGTGACATAACTTATCCAACCAGCA GTAATTATGCTGTGGATTTGTCTTCCTTGGTTGTCTCGCTCGCTTTGTTT GATGGTGATTGTGCTACTATACTTTTCAATTTTCCTAAATTGCATTTAGT CATCACTTGTCATTTAAATCATAATATTGTCCAGGAGATAAGATGTTATT TGCATGCTCGGGCATACCTATACCGCATGGAAGAACTAGACAAAGCCTAA CAAGATTTGTGACATCAGCACATTTGGTTACACAATTCAACGAGAATAGA AATAAAGATGATAAGTTGAGGGTTGGTGCTGCTAATCATTGTGTTCCTTC ATTTTTCTTTGTATATATTCAAGCTAACTGTGGACATCCTGAGCTTGTGC TTGTGCACTGCTTTTATTTCTGTAGGTTGCAGTGCGCCTTCCTAATAATA CAGCTACTGATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGTC ACATGCTTGGGCTTCCTAGGAGTCCATCCTATAGATCTGGATCTTAACAC AAGACCTCACCCTTTTGATAGTGTGCAAGCTGCTGGGCGTGCCTTCAACT CTGCCAGTTTGATGGCCATGCGTGGATCTCTGTATCAGAAACGCTGCCTC AAAAACCTCGACCACATCAACACCTGGGTTTTTGATAGTCAAGATATCTA TAAGGTATATTGTCGATTTATTTACTTGTAACTTTGTGGCATGATGGAAA ACATGGAACACATAATTGCGTTATGTCATTGCTGGTCTACAGTATCACCA TGTGCATTGAAGCAAATCGTTTCTAAACCTACCACTTTGCTTTTGTTGTA GGCTGTACTTGGAGGGCCACTTCTGGGGTGCGATAATAAAATTCTCGTCA TGAACTTAGATATTTATGACCCTGGTGATGGAATTTTGAGATGCACCTTA CTATCAATGGACTTACTTTGCAAACGCTTGAAGCATTTTCAGATACTCAA GTATGTCTTCTACACTTACAGTATTTATGAACTATTTCTTCAGTTAACCT GATTCATATTTGTTCCAAACGCTCTCTCCCAATCCACTTAATGTTTAAGG TAAACCATTTTTACTAACAGAATTGGAGACTTAGGAGTTTTCACATGGTA ACCTTTGGGTTGAAAATAATTTGGTTCTTCTTACCCCTGTCTACTGAAAC CAGTACCATTGCCAGATCTTATGATGCTAACTTAGTGCCCATGCTTGTGC TTTGGTCTAAATTAGGAAGAATTAAACAATTCTTTGTGGCAATATGTACA ATGCAACTTGTATTTGTGACATGAATATGCTCAATCCTCTCATCTTTTGT TGAATATTTATGCCTGATTCCAAGTCATTATTCCATACCTTTATTTCTTT CACAAGACAAGATTAGTTTCATGTGTTGGTATGATTGGATTTTTTCCCTG TGTAGTTCCTATGTTTTATTTTGTCATAACAAGTCAACTATGTTTTATTG CAGTCTTGAAAAACTACACTTCTGTGGATATATGTTGCCTAAAGAAGTAT CAAGTGTAGTTCCTTCAGGTCTGAACAATACTGCAAGCCATCTTCTAAAA TGTTGCCTATGTATCATTGTGCGCAGAATACTATGTTGCCAGTATCACAC ATATCATCTGAGGACTAACAGTAATCTCAATATTGCATCAGGATTTATGC AAATTATTTGCAGGTTAAAGTCAAAAGGGTATCCCATTCCACCACCACTT GTGCTCAAATGTAAGTGTTGCTTTTGATATTGCTATCATCTCCCTTGTCC CTTTTTGTAGTTCACTTCTGATCTTCGCTGTTTAAATAGCCAATGGGCAG TTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTACTTCCTTGGAAAGG GTTTCCCTATGGTGATCCACCCGGTGTCTCTAGAGACCGTGTCTGGAATG AACTACCGAAAGAAGTTGTGACAGATGTATCCCGTCGTGTTGTCTCACTT GCTTCATTCAATGGTGATTTTTCCAGTTGTGTCTCCTTACTTGTCTGTGC CACTAGTATTTTATCTTCACTAACTAATTAATGATTAAACTTATAATGTG TAGGGTATGTGAGATCTTTTGCATGCACAGGCTTGCTTATAAAGTGGCAT GGAAGCAAAGCTAAGCACACAGTCATCCTGACTTCAGCCAGTTTGGTTAG AGGTTGTTGTAAAGAGGATAGCATTGATAATAGCTTGACGGTTGGTGCTC CTTAGTCCTTACTTTTGGTCTTTTAAGTTTAATGATGGTTCACTAAGCTC ACTTTCTCATTGTAGATTGAGGTGTTTCTCCCACCGAATCAACGTGCTGG TGAGACATTGGAATTTTATAATTTAGACTGTAACATTGCTATTGTCAGTC TCAAGAAGAATTTCAATGCTATTTGTCCGGACTACATCTTCATTGAAAGT GCACAAAACTCATCTAAAAAAGTTGTAGCTATAGGGCGTGATGCTAAATT TGGTATATTAATGGCCGCAAGTGGTGAAATGATGCCTGTAAACAAGAGTT GCGAACTTGATTGCAAAGATGTTCGGCTGTCTTCTTGTAAAATCAAGAAG GAACTGTGGTGAATCTCTCTTACTGTTCTTTTATATGGTAACCGGTTTAA TCATATCGCATCTACTGAACTTATCAGGAATTTCAAGTTTTCCAGTAACC TTGGGCCTTTTTTTTAAACTAGGCTGGGATTGGAGGCCCGCTTATTAATC TTGATGGGAGTTTTGTTGGCATGAACTTCTATGATGGAAGCGGTGTAACT CCTTTCTTACCAAGGCACAAGATTGTTAAAGTTCTAAGTGGAGTGAATTC TTTACCATCAGAATGGTATTAGTTTCATCTCATTGCTAACTTGTAGGCAT GACACTTATTTTACAAACTTTGATTTTTTTTGTTTGATGACAGTGGATAT AACCATCCTATGCCTGTCAATGTTATTGGTGGGACAAAGAAGGGGATTCA GAAAAACAGGTATTTCTTTCTGTTTTCGCATTGCCACTTGTTTCTGTTTT GTTAGACTATTTTGTTCAACAGCCAACTTACATTGGGACAAAAACATATT TGATGATAGGTGGCCGGTGCCCGAGCCATATTGGTATCATGGCGCACTTG ATGCGAGTGTTCATGATCTAGGCAAACATATTGGGCGGCGTCTTAATTAG
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Coding sequence (CDS) from alignment at Sh_002I17:22696..26595-

>Sh_002I17_t000040 ID=Sh_002I17_t000040|Name=Sh_002I17_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=2148bp|location=Sequence derived from alignment at Sh_002I17:22696..26595- (R570 Sugarcane cultivar)
ATGAACTTGCTGCCTATGTTGACTACAAAGACCACGAGGAACAAGCGGGG
GATTGACTGCACAAGAGGTGTGAGTAAGGAGCAGAGAGCCATAAACAGAA
GGAACAAACTCGAGTCATCACTGGTTTCAAGTCGGAGTTATGTCCCTAGT
GGTAACAAGAGAGCCTGGAACCACAACGTAAAATGGATGCTAGAACGTCA
TGCGGCTAATACGGCGTACCGTAATTTTGAGGAGAATATATCTGCTATTG
CAGTGCAACGATTCGGCGAAACTTTTCGTGATAGAGAAGGTTCAAACGTT
GCTTTTGAGGAGAGGTCATTTGGTGATATAGTCAAACCTGGTGACATAAC
TTATCCAACCAGCAGTAATTATGCTGTGGATTTGTCTTCCTTGGTTGTCT
CGCTCGCTTTGTTTGATGGAGATAAGATGTTATTTGCATGCTCGGGCATA
CCTATACCGCATGGAAGAACTAGACAAAGCCTAACAAGATTTGTGACATC
AGCACATTTGGTTACACAATTCAACGAGAATAGAAATAAAGATGATAAGT
TGAGGGTTGCAGTGCGCCTTCCTAATAATACAGCTACTGATGGGTTCTTA
GGACTATATGATAAAGACATTGCTATCGTCACATGCTTGGGCTTCCTAGG
AGTCCATCCTATAGATCTGGATCTTAACACAAGACCTCACCCTTTTGATA
GTGTGCAAGCTGCTGGGCGTGCCTTCAACTCTGCCAGTTTGATGGCCATG
CGTGGATCTCTGTATCAGAAACGCTGCCTCAAAAACCTCGACCACATCAA
CACCTGGGTTTTTGATAGTCAAGATATCTATAAGGCTGTACTTGGAGGGC
CACTTCTGGGGTGCGATAATAAAATTCTCGTCATGAACTTAGATATTTAT
GACCCTGGTGATGGAATTTTGAGATGCACCTTACTATCAATGGACTTACT
TTGCAAACGCTTGAAGCATTTTCAGATACTCAATCTTGAAAAACTACACT
TCTGTGGATATATGTTGCCTAAAGAAGTATCAAGTGTAGTTCCTTCAGGT
CTGAACAATACTGCAAGCCATCTTCTAAAATGTTGCCTATGTATCATTGT
GCGCAGAATACTATGTTGCCAGTATCACACATATCATCTGAGGACTAACA
GTAATCTCAATATTGCATCAGGATTTATGCAAATTATTTGCAGGTTAAAG
TCAAAAGGGTATCCCATTCCACCACCACTTGTGCTCAAATCCAATGGGCA
GTTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTACTTCCTTGGAAAG
GGTTTCCCTATGGTGATCCACCCGGTGTCTCTAGAGACCGTGTCTGGAAT
GAACTACCGAAAGAAGTTGTGACAGATGTATCCCGTCGTGTTGTCTCACT
TGCTTCATTCAATGGTGATTTTTCCAGTTGTGTCTCCTTACTTGTCTGTG
CCACTAGGTATGTGAGATCTTTTGCATGCACAGGCTTGCTTATAAAGTGG
CATGGAAGCAAAGCTAAGCACACAGTCATCCTGACTTCAGCCAGTTTGGT
TAGAGGTTGTTGTAAAGAGGATAGCATTGATAATAGCTTGACGATTGAGG
TGTTTCTCCCACCGAATCAACGTGCTGGTGAGACATTGGAATTTTATAAT
TTAGACTGTAACATTGCTATTGTCAGTCTCAAGAAGAATTTCAATGCTAT
TTGTCCGGACTACATCTTCATTGAAAGTGCACAAAACTCATCTAAAAAAG
TTGTAGCTATAGGGCGTGATGCTAAATTTGGTATATTAATGGCCGCAAGT
GGTGAAATGATGCCTGTAAACAAGAGTTGCGAACTTGATTGCAAAGATGC
TGGGATTGGAGGCCCGCTTATTAATCTTGATGGGAGTTTTGTTGGCATGA
ACTTCTATGATGGAAGCGGTGTAACTCCTTTCTTACCAAGGCACAAGATT
GTTAAAGTTCTAAGTGGAGTGAATTCTTTACCATCAGAATGTGGATATAA
CCATCCTATGCCTGTCAATGTTATTGGTGGGACAAAGAAGGGGATTCAGA
AAAACAGGTGGCCGGTGCCCGAGCCATATTGGTATCATGGCGCACTTGAT
GCGAGTGTTCATGATCTAGGCAAACATATTGGGCGGCGTCTTAATTAG
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