Sh_002I17_t000060

Overview
NameSh_002I17_t000060
Unique NameSh_002I17_t000060
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1272
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:35429..38969
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000060Sh_002I17_g000060R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000060Sh_002I17_p000060R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000060 ID=Sh_002I17_t000060|Name=Sh_002I17_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=1272bp
ATGAGAGAACGTAAAGCGGCTAATGCGGCGTTTCGTAATTTTGAGGAGAA
TCTATGTGCTATTGCTGTGCAACGATTTGGCGAACCTTTTCGTGATAGAG
AAGTTAACGTTGCTTTTGAGGAGAGGTCATTTGGTCATAGAGTCAAACCT
GGTGAAATAACTTGTCCAATCAGTACTAATTATCCTGTGGATTTGTCTTC
CTTGGTCGTCTCGATCGCTTTGTTTGATGGAGATAAGATATTATTTGCTT
GCTCGGGCATACCTATACCTCACGGAAGAACTAGACAAAGCCTAACAAGA
TTTGTGACATCAACACATTTGGTTACACAATTCAACGAGAATAGAAATAA
AGATGATAAGTTGCAGTGCGCCTTCCTGGTTCCTAATAATACAGCTACCG
ATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGTCACATGCTTG
GGCTTCCTAGGAGTCCGTCCTATAGATCTGGATCATAAGGCAAAACCTTT
CCCTGGTGATAGTTTGAAAGCGGCTGGGCGTGCCTTCAACTCTGGCAGTT
TGATGGCCATACATGGATCTCTGTATCAGAAATGCCCCCTCGAACACCTC
AACACCTGGGTTTCTGATAGTCAAGATATCTCTAAGGCTGTACTTGGAGG
TCCACTTCTGGGGTGGGATAATAAAATTGTCGGGATGAGCTTAGATATTT
ATGACCCTGGTGATGCAAATTTGAGATACACCTTCCTACCAATGGACTTA
CTTTGCAAACGCTTGAAGCATTTTCAGATACTCAATCCTGAAAAACTACA
CTTCCGTGGATATACGTTGCCTAAAGATGTATCAAGCGTAGTTCCTTCAG
GTGTGAACAATACTGCAAGCCATCTTCTAAAATGTTGCCTATGTATCATT
GTGCGCAGAATACTATGTTACCAGTATCACACATATCATCTGAGGACTAA
TAATGATCTCAATATTGCATCAGGGTTTATGCAAACTATTTGCAGGTTAA
AGTCCTGTGGCTATCCTATTCCACCGCCGCTTGTGCTCGAATTCAATGGG
CAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTACTTCCTTGGAA
AGGGTATCCCTATGGTCATGCTTTCAGACTATTTTGTTCAACAGCCAACT
TACATTGGGACAAAAACATATTTGATGATAGGTGGCCGGTGCCCGAGCCA
TATTGGTATCATGGCGCACTTGATGCGAGTGTTCATGATCTAGGCAAACA
TATTGGGCGGCGTCTTAATTAG
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protein sequence of Sh_002I17_p000060

>Sh_002I17_p000060 ID=Sh_002I17_p000060|Name=Sh_002I17_p000060|organism=R570 Sugarcane cultivar|type=polypeptide|length=424bp
MRERKAANAAFRNFEENLCAIAVQRFGEPFRDREVNVAFEERSFGHRVKP
GEITCPISTNYPVDLSSLVVSIALFDGDKILFACSGIPIPHGRTRQSLTR
FVTSTHLVTQFNENRNKDDKLQCAFLVPNNTATDGFLGLYDKDIAIVTCL
GFLGVRPIDLDHKAKPFPGDSLKAAGRAFNSGSLMAIHGSLYQKCPLEHL
NTWVSDSQDISKAVLGGPLLGWDNKIVGMSLDIYDPGDANLRYTFLPMDL
LCKRLKHFQILNPEKLHFRGYTLPKDVSSVVPSGVNNTASHLLKCCLCII
VRRILCYQYHTYHLRTNNDLNIASGFMQTICRLKSCGYPIPPPLVLEFNG
QLLNHFEECFGELLPWKGYPYGHAFRLFCSTANLHWDKNIFDDRWPVPEP
YWYHGALDASVHDLGKHIGRRLN*
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mRNA from alignment at Sh_002I17:35429..38969-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000060 ID=Sh_002I17_t000060|Name=Sh_002I17_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=3541bp|location=Sequence derived from alignment at Sh_002I17:35429..38969- (R570 Sugarcane cultivar)
CCCTACGTCTCGACATCTCGCAGTCCGGTGGCAGCGACAAGCTAGTCTCG CGGGCGTACGGTGCCGTCACGGTTGACGGCGACTCCGGCCAGCGGGGTGG TCGGGGACGCATCTGACGACTAGCTTGTGATTCATCGAGGGGAAATTGTG CAATGTAAGCGTCTCTTTACTCATTTGCTCACTGTGATAGTTGCAATTGC TCACGGATCTGTTCCAGTTGAGTTAATTATACTCTACATCCAACTTGAGT TGGTTATGCTTCGATTGTGGCTTGAACGATGTGTTGGCCCAAGTAAAATC ACATGTACATGTTGTCTAGCTACGAGTAATGTTTATCCATCATACTCCCC CACACATATCAGAACCATCACAGATTTTTGGTTGCGGTTTATATTTTCTA AAATAACCTTTTAAGCTAACATCCATGCATATGTTCTGTTTTTTTTCCAT AGGAAATTCAGACATCACAGATTTTGGATGGGGCTTGTTACGATCTGTAG CTTAACTTTAAGCTAACATCCACTTACATACGTTACAGCTTTTTCCTACA GCAAAATTCCCTATTCTCTTCTTTGTAATCATGTATGAATGTGGCCAGTT AAATAACTTTGTTTAGACTTGCCCACTTCATATTGGTTTGATTGCTTTCT GTTATGATTACATTATTTTTCTGCTGCGCCCTTTCTGTCAATCTTAGCCA GCAGCTAGGAACTTGCTGCCTATATTGTCACTCCTTGATTGCCAATTTGC GATACAACACCAAGTTTTGGATAGATTTGAGCTTTTTTTTACATTTATAT GCAAAGTATCAGATCAATCTAGTACTGATTTTTAGCACATGCTTCGTCAT AGTGTTATTGTTGATAGTATTATCAATGAACCTAATATTTTAAGGTTTAC AAGGTGCTTCATTGTTTTGATTTCCATTTTTTTGTGGGGTGGGGGTGGGG AGGGGGGATTATAAGCATACAAAAGGGTCTTAATTACTGTACTAAGCATT TGCATTTATTTTCTGCTTCAGGACTGCAAAGACCCTGAGGAACAAAGGGG GGACTATTGATTGCACAAGAGGCGTGAGTAGGGAGCAGAGAGCCATAAAC AGAAGGAACAAACTTGAGTCATCACTGGTTTCAAGTCGGAGTTATGTCCC AGAATGTGGAAGCCATAACAAGAGATCCTGGAACCGCATCATAAAAAGGA TGAGAGAACGTGAGTAGTTGATTTGAATTGGCTGGTTCTTTCTTTTGTGG CACATATTGATCTAGCAAAGCACTCACTCAGCTGTTGTGTATCATGTTTA TTAATCAGGTAAAGCGGCTAATGCGGCGTTTCGTAATTTTGAGGAGAATC TATGTGCTATTGCTGTGCAACGATTTGGCGAACCTTTTCGTGATAGAGAA GTTAACGTTGCTTTTGAGGAGAGGTCATTTGGTCATAGAGTCAAACCTGG TGAAATAACTTGTCCAATCAGTACTAATTATCCTGTGGATTTGTCTTCCT TGGTCGTCTCGATCGCTTTGTTTGATGGTGATTGTGCTACTATACTTTTC AATTTTTCTAAACAAATTGCATTTAGTCATCACTTGTTATTTAAATCATG ATATTCTCCAGGAGATAAGATATTATTTGCTTGCTCGGGCATACCTATAC CTCACGGAAGAACTAGACAAAGCCTAACAAGATTTGTGACATCAACACAT TTGGTTACACAATTCAACGAGAATAGAAATAAAGATGATAAGTTGAGGGT TAGTGCTGCTAATCAATGTGCTCCTTGATTTTTCTTTGTATATGCAAGCT AATTGTGAACATCCTGAGCTTGTGCTTGTGTACTGCTTTTATTTCTGTAG GTTGCAGTGCGCCTTCCTGGTTCCTAATAATACAGCTACCGATGGGTTCT TAGGACTATATGATAAAGACATTGCTATCGTCACATGCTTGGGCTTCCTA GGAGTCCGTCCTATAGATCTGGATCATAAGGCAAAACCTTTCCCTGGTGA TAGTTTGAAAGCGGCTGGGCGTGCCTTCAACTCTGGCAGTTTGATGGCCA TACATGGATCTCTGTATCAGAAATGCCCCCTCGAACACCTCAACACCTGG GTTTCTGATAGTCAAGATATCTCTAAGGTATACTGTCGATTTATTTATTT GTAACTTTGCGGCATGATGGAAAACATGGAACACATAACTGCGTTATGTT ATTGCTGGTCTAAAGTATCAGTGTGTGCATTGAAGTAAATCCTTTATAAA CCTACCACTTTGCTTTTGTTCTAGGCTGTACTTGGAGGTCCACTTCTGGG GTGGGATAATAAAATTGTCGGGATGAGCTTAGATATTTATGACCCTGGTG ATGCAAATTTGAGATACACCTTCCTACCAATGGACTTACTTTGCAAACGC TTGAAGCATTTTCAGATACTCAAGTATGTCTTCTACACTTACAATATTTA TTAACTATTTCTTCAGTTAACCTGATTCATGTTTGTTCCAAACCGTCTCT CCTAATCCACTTCCTGTTTAAGGTTAGCCATTTTTACTAACAGCATTGGA GACTTAGTTGTTTTCACATGGTAACCTTTGGATTGAAAATAATTTTGTTC TTCTTACCCCTCTCTACTGAAACCAGTACCATTGCCAGATCTTATGATGC TAACTTAGTTCCCATGCTTAATGTTTTGGTCTAAATTAGGAATAATTAAA CAATTCTTTGTGGCAATATGGACAATGCAACCTATATTTGTGACATGAAT ATGCTCAATCCTCTCATCTTTTGTTCAATATTTATGCCTGATTCTAAGTC ATTATTTCATACCTTTATTTCTTTCACAAGACAAGATTAGATTCATGTGT TGGTATGATTGGATTTTTTCCCTGTGTAGTTCCTATGTTTTGTTTTGTCA TAATAACAAGTCAACTATGTTTTATTGCAGTCCTGAAAAACTACACTTCC GTGGATATACGTTGCCTAAAGATGTATCAAGCGTAGTTCCTTCAGGTGTG AACAATACTGCAAGCCATCTTCTAAAATGTTGCCTATGTATCATTGTGCG CAGAATACTATGTTACCAGTATCACACATATCATCTGAGGACTAATAATG ATCTCAATATTGCATCAGGGTTTATGCAAACTATTTGCAGGTTAAAGTCC TGTGGCTATCCTATTCCACCGCCGCTTGTGCTCGAATGTAAGTGTTGCTT TTGATATTGCTGTCATCTCCCTTGGCCTTTTTGTAGTTCACTTCTGATCT TCGTTCTTTAACTAGTCAATGGGCAATTGCTTAATCATTTTGAAGAATGC TTTGGTGAATTACTTCCTTGGAAAGGGTATCCCTATGGTCATGCTTTCAG GTATTTCTTTCTGTTTTCGCATTACCACTTGTTTCTGTTTTGTTAGACTA TTTTGTTCAACAGCCAACTTACATTGGGACAAAAACATATTTGATGATAG GTGGCCGGTGCCCGAGCCATATTGGTATCATGGCGCACTTGATGCGAGTG TTCATGATCTAGGCAAACATATTGGGCGGCGTCTTAATTAG
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Coding sequence (CDS) from alignment at Sh_002I17:35429..38969-

>Sh_002I17_t000060 ID=Sh_002I17_t000060|Name=Sh_002I17_t000060|organism=R570 Sugarcane cultivar|type=CDS|length=1272bp|location=Sequence derived from alignment at Sh_002I17:35429..38969- (R570 Sugarcane cultivar)
ATGAGAGAACGTAAAGCGGCTAATGCGGCGTTTCGTAATTTTGAGGAGAA
TCTATGTGCTATTGCTGTGCAACGATTTGGCGAACCTTTTCGTGATAGAG
AAGTTAACGTTGCTTTTGAGGAGAGGTCATTTGGTCATAGAGTCAAACCT
GGTGAAATAACTTGTCCAATCAGTACTAATTATCCTGTGGATTTGTCTTC
CTTGGTCGTCTCGATCGCTTTGTTTGATGGAGATAAGATATTATTTGCTT
GCTCGGGCATACCTATACCTCACGGAAGAACTAGACAAAGCCTAACAAGA
TTTGTGACATCAACACATTTGGTTACACAATTCAACGAGAATAGAAATAA
AGATGATAAGTTGCAGTGCGCCTTCCTGGTTCCTAATAATACAGCTACCG
ATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGTCACATGCTTG
GGCTTCCTAGGAGTCCGTCCTATAGATCTGGATCATAAGGCAAAACCTTT
CCCTGGTGATAGTTTGAAAGCGGCTGGGCGTGCCTTCAACTCTGGCAGTT
TGATGGCCATACATGGATCTCTGTATCAGAAATGCCCCCTCGAACACCTC
AACACCTGGGTTTCTGATAGTCAAGATATCTCTAAGGCTGTACTTGGAGG
TCCACTTCTGGGGTGGGATAATAAAATTGTCGGGATGAGCTTAGATATTT
ATGACCCTGGTGATGCAAATTTGAGATACACCTTCCTACCAATGGACTTA
CTTTGCAAACGCTTGAAGCATTTTCAGATACTCAATCCTGAAAAACTACA
CTTCCGTGGATATACGTTGCCTAAAGATGTATCAAGCGTAGTTCCTTCAG
GTGTGAACAATACTGCAAGCCATCTTCTAAAATGTTGCCTATGTATCATT
GTGCGCAGAATACTATGTTACCAGTATCACACATATCATCTGAGGACTAA
TAATGATCTCAATATTGCATCAGGGTTTATGCAAACTATTTGCAGGTTAA
AGTCCTGTGGCTATCCTATTCCACCGCCGCTTGTGCTCGAATTCAATGGG
CAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTACTTCCTTGGAA
AGGGTATCCCTATGGTCATGCTTTCAGACTATTTTGTTCAACAGCCAACT
TACATTGGGACAAAAACATATTTGATGATAGGTGGCCGGTGCCCGAGCCA
TATTGGTATCATGGCGCACTTGATGCGAGTGTTCATGATCTAGGCAAACA
TATTGGGCGGCGTCTTAATTAG
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