Sh_002I17_t000100

Overview
NameSh_002I17_t000100
Unique NameSh_002I17_t000100
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length447
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:67859..68355
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000100Sh_002I17_g000100R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000100Sh_002I17_p000100R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000100 ID=Sh_002I17_t000100|Name=Sh_002I17_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=447bp
ATGGATAATAACGTTGGATCAAGCACTGCTAAGAATTTTTATGTTCGACC
TTTAAAGAAAGCAAAATGTACTGAATTTGATATGTTGGAATCGGATAAAA
TGAAAAATGTTCATCCAATGCCTTCAACTGCATCACCAACCAGAGAGACA
TTATCTTCAGTTTGTGAATTCAAAGATAAGCAGATAAGTCATGAAAAACA
TTCAGGTGAACTTATTATTGTTGATCCAACCATGAGTACTGAGGATATAA
AGCTAATCCATATTAAATTATATGCAAATTATACATTGACCAATATGGAC
TTATGTGCCCAAATAATAATAGAAACATCTTCGAAAGACGATCTACTGGT
GAAGATGGATGAAATATCTATGAAACAACATCAATTGTTGTGCCTCCTAG
ACCAAAGCAAATGGTTAGATGATGATGTAAGTACACCTAATGATTAG
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protein sequence of Sh_002I17_p000100

>Sh_002I17_p000100 ID=Sh_002I17_p000100|Name=Sh_002I17_p000100|organism=R570 Sugarcane cultivar|type=polypeptide|length=149bp
MDNNVGSSTAKNFYVRPLKKAKCTEFDMLESDKMKNVHPMPSTASPTRET
LSSVCEFKDKQISHEKHSGELIIVDPTMSTEDIKLIHIKLYANYTLTNMD
LCAQIIIETSSKDDLLVKMDEISMKQHQLLCLLDQSKWLDDDVSTPND*
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mRNA from alignment at Sh_002I17:67859..68355+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000100 ID=Sh_002I17_t000100|Name=Sh_002I17_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=497bp|location=Sequence derived from alignment at Sh_002I17:67859..68355+ (R570 Sugarcane cultivar)
ATGGATAATAACGTTGGATCAAGCACTGCTAAGAATTTTTATGTTCGACC TTTAAAGAAAGCAAAATGTACTGAATTTGATATGTTGGAATCGGATAAAA TGAAAAATGTTCATCCAATGCCTTCAACTGCATCACCAACCAGAGAGACA TTATCTTCAGTTTGTGAATTCAAAGATAAGCAGATAAGTCATGAAAAACA TTCAGGTGAACTTATTATTGTTGATCCAACCATGAGGTTTTTTTTCATTT ATATCTGTTCTTTGGTATGTAATCTTTTGATTATAGTACTGAGGATATAA AGCTAATCCATATTAAATTATATGCAAATTATACATTGACCAATATGGAC TTATGTGCCCAAATAATAATAGAAACATCTTCGAAAGACGATCTACTGGT GAAGATGGATGAAATATCTATGAAACAACATCAATTGTTGTGCCTCCTAG ACCAAAGCAAATGGTTAGATGATGATGTAAGTACACCTAATGATTAG
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Coding sequence (CDS) from alignment at Sh_002I17:67859..68355+

>Sh_002I17_t000100 ID=Sh_002I17_t000100|Name=Sh_002I17_t000100|organism=R570 Sugarcane cultivar|type=CDS|length=447bp|location=Sequence derived from alignment at Sh_002I17:67859..68355+ (R570 Sugarcane cultivar)
ATGGATAATAACGTTGGATCAAGCACTGCTAAGAATTTTTATGTTCGACC
TTTAAAGAAAGCAAAATGTACTGAATTTGATATGTTGGAATCGGATAAAA
TGAAAAATGTTCATCCAATGCCTTCAACTGCATCACCAACCAGAGAGACA
TTATCTTCAGTTTGTGAATTCAAAGATAAGCAGATAAGTCATGAAAAACA
TTCAGGTGAACTTATTATTGTTGATCCAACCATGAGTACTGAGGATATAA
AGCTAATCCATATTAAATTATATGCAAATTATACATTGACCAATATGGAC
TTATGTGCCCAAATAATAATAGAAACATCTTCGAAAGACGATCTACTGGT
GAAGATGGATGAAATATCTATGAAACAACATCAATTGTTGTGCCTCCTAG
ACCAAAGCAAATGGTTAGATGATGATGTAAGTACACCTAATGATTAG
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