Sh_002I17_t000110

Overview
NameSh_002I17_t000110
Unique NameSh_002I17_t000110
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length771
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:92742..94749
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000110Sh_002I17_g000110R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000110Sh_002I17_p000110R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000110 ID=Sh_002I17_t000110|Name=Sh_002I17_t000110|organism=R570 Sugarcane cultivar|type=mRNA|length=771bp
ATGAGAGCCTGGAACCGCAACGTAAAATGGATGCTAGAACGTCATGCAGC
TAATAAGGCGTACCATAATTTTGAGGAGAATCTATCTGCTATTGCAATGC
AACGATTCAATGAACCTTTTCATGATAGAGAAGGTTCAAACGTTGCTTTT
GAGGAGAGGTCATTTGGTGATATAGTCAAACCTGGTGAAATAACTTATCC
AATCAGTAGTAATTATGCTGTGGATCTGTCTTCCTTGGTCGTCTCACTCG
CTTTGTTTGATGGAGATAAGATGCTATTCGCATGCTCAGGCATACCTATA
CCTCACGGAAGAACTAGACAAAGCCTAACAAGATTTGTGACATCAGCACA
TTTGGTTAGACAATTCAACGAGAAGAGAAATAAAGATGATAAGTTGAGGG
TTGGTGCTACTAATCATTGTGTTGTAGTGCGCCTTCCTAATAATACAGCT
ACTGATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGTCACATG
CTTGGGCTTCCTAGGAGTCCGTCCTATAGATCTGGATCATAAGGCAAAAC
TTTTCCCAGGTGATAGTTTGAAAGCGGCTGGGCGTGCCTTCAACTCTGGC
AGTTTGATGGCCATGCATGGATATCTGTATCAGAAACGCCCCCTCGAACA
CCTCGAACACCTCAACACTTGGGTTTCTGATAGTCAAGATATCTCTAAGG
GTTTATGCAACATCGGGGGGTCAGATCTCGTCGTTATTGCAATGATTCTT
TTTCAATGTTGCAACAGATGA
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protein sequence of Sh_002I17_p000110

>Sh_002I17_p000110 ID=Sh_002I17_p000110|Name=Sh_002I17_p000110|organism=R570 Sugarcane cultivar|type=polypeptide|length=257bp
MRAWNRNVKWMLERHAANKAYHNFEENLSAIAMQRFNEPFHDREGSNVAF
EERSFGDIVKPGEITYPISSNYAVDLSSLVVSLALFDGDKMLFACSGIPI
PHGRTRQSLTRFVTSAHLVRQFNEKRNKDDKLRVGATNHCVVVRLPNNTA
TDGFLGLYDKDIAIVTCLGFLGVRPIDLDHKAKLFPGDSLKAAGRAFNSG
SLMAMHGYLYQKRPLEHLEHLNTWVSDSQDISKGLCNIGGSDLVVIAMIL
FQCCNR*
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mRNA from alignment at Sh_002I17:92742..94749-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000110 ID=Sh_002I17_t000110|Name=Sh_002I17_t000110|organism=R570 Sugarcane cultivar|type=mRNA|length=2008bp|location=Sequence derived from alignment at Sh_002I17:92742..94749- (R570 Sugarcane cultivar)
ATGAGAGCCTGGAACCGCAACGTAAAATGGATGCTAGAACGTGAGTAGTT GATTTGAATTTGCTGGTTCTTTCTTTTGTGGCGCATATTGCTCTAGCACT CAGTTGTGGTATACCATGTTTATTAATCAGGTCATGCAGCTAATAAGGCG TACCATAATTTTGAGGAGAATCTATCTGCTATTGCAATGCAACGATTCAA TGAACCTTTTCATGATAGAGAAGGTTCAAACGTTGCTTTTGAGGAGAGGT CATTTGGTGATATAGTCAAACCTGGTGAAATAACTTATCCAATCAGTAGT AATTATGCTGTGGATCTGTCTTCCTTGGTCGTCTCACTCGCTTTGTTTGA TGGTGATTGTGCTACTATACTTTTCAATTTTCCTAAATTGCATTTAGTCA TCACTTGTCATTTAAATCATGATATTTTCCAGGAGATAAGATGCTATTCG CATGCTCAGGCATACCTATACCTCACGGAAGAACTAGACAAAGCCTAACA AGATTTGTGACATCAGCACATTTGGTTAGACAATTCAACGAGAAGAGAAA TAAAGATGATAAGTTGAGGGTTGGTGCTACTAATCATTGTGTTCCTTGAT TTTTCTTTGTATATTCAAGCTAACTGTGAACATCCTGAGCTTGTGCTTGT GTATTGCTTTTATTTCTGTAGGTTGTAGTGCGCCTTCCTAATAATACAGC TACTGATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGTCACAT GCTTGGGCTTCCTAGGAGTCCGTCCTATAGATCTGGATCATAAGGCAAAA CTTTTCCCAGGTGATAGTTTGAAAGCGGCTGGGCGTGCCTTCAACTCTGG CAGTTTGATGGCCATGCATGGATATCTGTATCAGAAACGCCCCCTCGAAC ACCTCGAACACCTCAACACTTGGGTTTCTGATAGTCAAGATATCTCTAAG GTATACTGTCAATTTATTTATTTGTAACTTTGTGGCATGATGGAAAACAT CGAACACATAATTGCGTTATGTCATTGCTGGTCTAAAGTATCACCGTGTG CATTGAAGCAAATCCTTTCTAAACCTACCACTTTGCTTTTGTTGTAGGCT GTACTTGGAGGGCCACTTCTGGGGTGCGATAAAACAATTCTCGGCATAAA CTTAGATATTTATGACCCTGTTAATGGAATTTCGAGATGCTCCTTCCTAT CTATGGACTTACTTCGCAAACGCTTGAAGCATTTTTAGATACTCAAGTAT GTCTTCTACACTTACAGTATATATGAACTATTTCTTCAGTTAACCTGATT CATATTTGTTCCAAACCCTCTCTCCTAATCCACTTCCTGTTTAAGGTAAG CCATTTTTACTAACAGCATTGGAGACTTAGGAGTTTTCACATGGTAACCT ATGGATTGAAAATAATCTGGTTCTTCTTACCCCTCTCTATTGAAACCAGT ACCATTGCCAGATCTTACGATGCTAACTTAGTGCCCATGCTTAATGCTTT GGTCTAAATTAGGAAGAATTAAACAATTCTTTGTGGCAATGTGTACAATG CAACTTGTATTTGTGACATGAATATGCTGAATCCTCTCATCTTTTGTTGA ATATTTATGCCTGATTCCAAGTCATTATTTCATACCTTTATTTCTTTCAC AAAACAAGATTAGATTCATGTGTTGTTATGATTCGGTCTTTTCCCTATGT ACTTCCTGTATTTTATTGCCATAACAAGTCAACTATGTTTTATTGCAGTC CTAAAAAACTAGACTTCCGTGGATATACGTTGCCTAAACATGTATTCAGC GTAGTTCCTTCAGGTGTGAACAATACTGCAAGCCATCTTCTAAAATGTTG CCTATGTATCATTGTGTGCATAATACTATGTTACCAGTATCACACATATC ATCTGAGGACTAATAGTGATCTCAATATTGCATCAGGGTTTATGCAACAT CGGGGGGTCAGATCTCGTCGTTATTGCAATGATTCTTTTTCAATGTTGCA ACAGATGA
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Coding sequence (CDS) from alignment at Sh_002I17:92742..94749-

>Sh_002I17_t000110 ID=Sh_002I17_t000110|Name=Sh_002I17_t000110|organism=R570 Sugarcane cultivar|type=CDS|length=771bp|location=Sequence derived from alignment at Sh_002I17:92742..94749- (R570 Sugarcane cultivar)
ATGAGAGCCTGGAACCGCAACGTAAAATGGATGCTAGAACGTCATGCAGC
TAATAAGGCGTACCATAATTTTGAGGAGAATCTATCTGCTATTGCAATGC
AACGATTCAATGAACCTTTTCATGATAGAGAAGGTTCAAACGTTGCTTTT
GAGGAGAGGTCATTTGGTGATATAGTCAAACCTGGTGAAATAACTTATCC
AATCAGTAGTAATTATGCTGTGGATCTGTCTTCCTTGGTCGTCTCACTCG
CTTTGTTTGATGGAGATAAGATGCTATTCGCATGCTCAGGCATACCTATA
CCTCACGGAAGAACTAGACAAAGCCTAACAAGATTTGTGACATCAGCACA
TTTGGTTAGACAATTCAACGAGAAGAGAAATAAAGATGATAAGTTGAGGG
TTGGTGCTACTAATCATTGTGTTGTAGTGCGCCTTCCTAATAATACAGCT
ACTGATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGTCACATG
CTTGGGCTTCCTAGGAGTCCGTCCTATAGATCTGGATCATAAGGCAAAAC
TTTTCCCAGGTGATAGTTTGAAAGCGGCTGGGCGTGCCTTCAACTCTGGC
AGTTTGATGGCCATGCATGGATATCTGTATCAGAAACGCCCCCTCGAACA
CCTCGAACACCTCAACACTTGGGTTTCTGATAGTCAAGATATCTCTAAGG
GTTTATGCAACATCGGGGGGTCAGATCTCGTCGTTATTGCAATGATTCTT
TTTCAATGTTGCAACAGATGA
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