Sh_002I17_t000120

Overview
NameSh_002I17_t000120
Unique NameSh_002I17_t000120
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length300
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteCBL-interacting protein kinase 26
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:97595..97894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000120Sh_002I17_g000120R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000120Sh_002I17_p000120R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000120 ID=Sh_002I17_t000120|Name=Sh_002I17_t000120|organism=R570 Sugarcane cultivar|type=mRNA|length=300bp
ATGGAGGTGGTTGCAATGCCCGCCTCGGAAAACCAAAAATGCATGCCTCC
AAAAAGATGTGTAGTAGTGTGTTGGCTCTTGGCGGGATGCCCATGTTCAT
CGCGCGTTGAGGTGCTCCTGCGCTGCGGCAACGATGCCGCCAAGGCCGAC
ATCTGGGCCTGCGGCGTCGTCCTCTTCACGCTCGTGGCAGGCCTCTTCCC
CTTCAACTACAAGGACACCAGCTTGTACCACATGATCCGCCAAGGCCGAC
AGCTGGATGATCGTTGTATCTTTAATTTTATTTCAACAGTTCTATATTAG
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protein sequence of Sh_002I17_p000120

>Sh_002I17_p000120 ID=Sh_002I17_p000120|Name=Sh_002I17_p000120|organism=R570 Sugarcane cultivar|type=polypeptide|length=100bp
MEVVAMPASENQKCMPPKRCVVVCWLLAGCPCSSRVEVLLRCGNDAAKAD
IWACGVVLFTLVAGLFPFNYKDTSLYHMIRQGRQLDDRCIFNFISTVLY*
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mRNA from alignment at Sh_002I17:97595..97894+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000120 ID=Sh_002I17_t000120|Name=Sh_002I17_t000120|organism=R570 Sugarcane cultivar|type=mRNA|length=300bp|location=Sequence derived from alignment at Sh_002I17:97595..97894+ (R570 Sugarcane cultivar)
ATGGAGGTGGTTGCAATGCCCGCCTCGGAAAACCAAAAATGCATGCCTCC AAAAAGATGTGTAGTAGTGTGTTGGCTCTTGGCGGGATGCCCATGTTCAT CGCGCGTTGAGGTGCTCCTGCGCTGCGGCAACGATGCCGCCAAGGCCGAC ATCTGGGCCTGCGGCGTCGTCCTCTTCACGCTCGTGGCAGGCCTCTTCCC CTTCAACTACAAGGACACCAGCTTGTACCACATGATCCGCCAAGGCCGAC AGCTGGATGATCGTTGTATCTTTAATTTTATTTCAACAGTTCTATATTAG
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Coding sequence (CDS) from alignment at Sh_002I17:97595..97894+

>Sh_002I17_t000120 ID=Sh_002I17_t000120|Name=Sh_002I17_t000120|organism=R570 Sugarcane cultivar|type=CDS|length=300bp|location=Sequence derived from alignment at Sh_002I17:97595..97894+ (R570 Sugarcane cultivar)
ATGGAGGTGGTTGCAATGCCCGCCTCGGAAAACCAAAAATGCATGCCTCC
AAAAAGATGTGTAGTAGTGTGTTGGCTCTTGGCGGGATGCCCATGTTCAT
CGCGCGTTGAGGTGCTCCTGCGCTGCGGCAACGATGCCGCCAAGGCCGAC
ATCTGGGCCTGCGGCGTCGTCCTCTTCACGCTCGTGGCAGGCCTCTTCCC
CTTCAACTACAAGGACACCAGCTTGTACCACATGATCCGCCAAGGCCGAC
AGCTGGATGATCGTTGTATCTTTAATTTTATTTCAACAGTTCTATATTAG
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