Sh_002I19_t000020

Overview
NameSh_002I19_t000020
Unique NameSh_002I19_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length858
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Note3-oxo-5-alpha-steroid 4-dehydrogenase 2
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I19contigSh_002I19:20300..21170
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I19_g000020Sh_002I19_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I19_p000020Sh_002I19_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I19_t000020 ID=Sh_002I19_t000020|Name=Sh_002I19_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=858bp
ATGTGGCCGTCGACGACGTCGTGGTTCCCGTTCCTGTACCCGCCGCCGGC
GTCGGCGTACGTGGCGGCGATGTCGGCGGTGTCGCTGGTGTCCATGGCGA
ACGCGGGCCTCGCCGAGCTCCGCGGCGACCACATGGCCTACTCCAAGTTC
TGGCACGTCGTGGCGGCGGCGGGTGCCGGCGGGAACACCAAGCAGCGGCG
CGGCGCCGGCGGCGGCACGGGCGCGCTCTTGAGAAGCCGCGACGGGATGC
TGCTGGCCTACGCCCCAGCGCTCCTCGCCGCCGCCGCGTCCTTCGCAGTG
CCGGGCGCCGTCGAAGGCGCGCGCGCCGAGCTCCTCAGCGCCGCGCTCGC
CGCCCACTTCCTCAAGCGGGTTCTCGAGGTGCTGTTCGTGCACCGGTACA
GCGGGAGCATGCCGCTGGACACGGCGGCCACCATCGCCTGCAGCTACCTG
CTGAGCACGGCCACCATGATCTACGCGCAGCACCTCAGCCACGACCTGCC
GGACCCCGCCGTGGACCTGCTCTACCCCGGCGTGCTCGTCTTCGCCGTCG
GCCTCGCCGGCAACTTCTACCACCACTACCTCCTCTCGAACCTGAGAGCC
GGAGACGGCGGCGACGACAAGGGGTACAAGATCCCCAGGGGCGGTCTGTT
CGGGCTCGTCACCTGCCCGCACTACCTCTTCGAGATCCTCGCCTTCTTTG
GGTTCGCCATGATCGCGCAGACGCTGTACGCGCTCGCCGTCGCCACGGGG
ACGGCGGCCTACCTCGCCGGCCGGAGCTGCGCCACCAGGAGGTGGTACCG
GTCCAAGTTCCAGGAGTTCCCGTCCAGGATCAAAGCGTTGCTGCCGTACG
TGTTGTAG
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protein sequence of Sh_002I19_p000020

>Sh_002I19_p000020 ID=Sh_002I19_p000020|Name=Sh_002I19_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=286bp
MWPSTTSWFPFLYPPPASAYVAAMSAVSLVSMANAGLAELRGDHMAYSKF
WHVVAAAGAGGNTKQRRGAGGGTGALLRSRDGMLLAYAPALLAAAASFAV
PGAVEGARAELLSAALAAHFLKRVLEVLFVHRYSGSMPLDTAATIACSYL
LSTATMIYAQHLSHDLPDPAVDLLYPGVLVFAVGLAGNFYHHYLLSNLRA
GDGGDDKGYKIPRGGLFGLVTCPHYLFEILAFFGFAMIAQTLYALAVATG
TAAYLAGRSCATRRWYRSKFQEFPSRIKALLPYVL*
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mRNA from alignment at Sh_002I19:20300..21170-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I19_t000020 ID=Sh_002I19_t000020|Name=Sh_002I19_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=871bp|location=Sequence derived from alignment at Sh_002I19:20300..21170- (R570 Sugarcane cultivar)
GATGTGGCCGTCGACGACGTCGTGGTTCCCGTTCCTGTACCCGCCGCCGG CGTCGGCGTACGTGGCGGCGATGTCGGCGGTGTCGCTGGTGTCCATGGCG AACGCGGGCCTCGCCGAGCTCCGCGGCGACCACATGGCCTACTCCAAGTT CTGGCACGTCGTGGCGGCGGCGGGTGCCGGCGGGAACACCAAGCAGCGGC GCGGCGCCGGCGGCGGCACGGGCGCGCTCTTGAGAAGCCGCGACGGGATG CTGCTGGCCTACGCCCCAGCGCTCCTCGCCGCCGCCGCGTCCTTCGCAGT GCCGGGCGCCGTCGAAGGCGCGCGCGCCGAGCTCCTCAGCGCCGCGCTCG CCGCCCACTTCCTCAAGCGGGTTCTCGAGGTGCTGTTCGTGCACCGGTAC AGCGGGAGCATGCCGCTGGACACGGCGGCCACCATCGCCTGCAGCTACCT GCTGAGCACGGCCACCATGATCTACGCGCAGCACCTCAGCCACGACCTGC CGGACCCCGCCGTGGACCTGCTCTACCCCGGCGTGCTCGTCTTCGCCGTC GGCCTCGCCGGCAACTTCTACCACCACTACCTCCTCTCGAACCTGAGAGC CGGAGACGGCGGCGACGACAAGGGGTACAAGATCCCCAGGGGCGGTCTGT TCGGGCTCGTCACCTGCCCGCACTACCTCTTCGAGATCCTCGCCTTCTTT GGGTTCGCCATGATCGCGCAGACGCTGTACGCGCTCGCCGTCGCCACGGG GACGGCGGCCTACCTCGCCGGCCGGAGCTGCGCCACCAGGAGGTGGTACC GGTCCAAGTTCCAGGAGTTCCCGTCCAGGATCAAAGCGTTGCTGCCGTAC GTGTTGTAGTGATCAGCTAGG
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Coding sequence (CDS) from alignment at Sh_002I19:20300..21170-

>Sh_002I19_t000020 ID=Sh_002I19_t000020|Name=Sh_002I19_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=858bp|location=Sequence derived from alignment at Sh_002I19:20300..21170- (R570 Sugarcane cultivar)
ATGTGGCCGTCGACGACGTCGTGGTTCCCGTTCCTGTACCCGCCGCCGGC
GTCGGCGTACGTGGCGGCGATGTCGGCGGTGTCGCTGGTGTCCATGGCGA
ACGCGGGCCTCGCCGAGCTCCGCGGCGACCACATGGCCTACTCCAAGTTC
TGGCACGTCGTGGCGGCGGCGGGTGCCGGCGGGAACACCAAGCAGCGGCG
CGGCGCCGGCGGCGGCACGGGCGCGCTCTTGAGAAGCCGCGACGGGATGC
TGCTGGCCTACGCCCCAGCGCTCCTCGCCGCCGCCGCGTCCTTCGCAGTG
CCGGGCGCCGTCGAAGGCGCGCGCGCCGAGCTCCTCAGCGCCGCGCTCGC
CGCCCACTTCCTCAAGCGGGTTCTCGAGGTGCTGTTCGTGCACCGGTACA
GCGGGAGCATGCCGCTGGACACGGCGGCCACCATCGCCTGCAGCTACCTG
CTGAGCACGGCCACCATGATCTACGCGCAGCACCTCAGCCACGACCTGCC
GGACCCCGCCGTGGACCTGCTCTACCCCGGCGTGCTCGTCTTCGCCGTCG
GCCTCGCCGGCAACTTCTACCACCACTACCTCCTCTCGAACCTGAGAGCC
GGAGACGGCGGCGACGACAAGGGGTACAAGATCCCCAGGGGCGGTCTGTT
CGGGCTCGTCACCTGCCCGCACTACCTCTTCGAGATCCTCGCCTTCTTTG
GGTTCGCCATGATCGCGCAGACGCTGTACGCGCTCGCCGTCGCCACGGGG
ACGGCGGCCTACCTCGCCGGCCGGAGCTGCGCCACCAGGAGGTGGTACCG
GTCCAAGTTCCAGGAGTTCCCGTCCAGGATCAAAGCGTTGCTGCCGTACG
TGTTGTAG
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