Sh_002I19_t000040

Overview
NameSh_002I19_t000040
Unique NameSh_002I19_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length840
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I19contigSh_002I19:37400..40754
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I19_g000040Sh_002I19_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I19_p000040Sh_002I19_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I19_t000040 ID=Sh_002I19_t000040|Name=Sh_002I19_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=840bp
ATGAACATTAGTCGACGTGGAGTGCGACTGGACACAAGATGCCCTGTATG
CTTCCGCTTTGATGAGGATGGTGGCCACTGTTTTCTCAAATGCAAAATGA
TTAGACGCTGCTGGGCTGCTCTCTCCCTTGAACCGATTCGTCAAATGCTC
TTATTAAAACGATCGGCTTGGGAGGTGATAGTTACTGTACTTGGCTTGAA
GGAGGATGTCTGCATCAAGACGATGCTCCTACTCTGGCGCTGGTGGAGTG
TGCGAAATAAGGTGAACCAAGGAGAGAAGGGGCTGTCTGCGGATGAAGTA
GCTGCTGATGTTCTGAAGCTGATCAGTGATATGGGGTCTACCGAAAGACA
GCAGCCGATCCATCGTGAGGCTGCCGTGAAGAAATGGAACGCCCCACCGC
AGGGACAGCTTAAAATCAATACTGATGGCTCCTTCATTCCGGAGATGCTC
CAAGGCTGCTGGGGCTTCATTGTACGTGATCATGAAGGTGGTGCAGTCCT
GGCCGGGGCTGGACGGTTGGGTGCGGCACCAGATGCACTCAGTACCGAGG
CTACAGCTTGCCAACAAGCTCTCCAAGCGGCCACTGATTATCGTATATCA
CGCATTCAGGTTGAGGTTGATTCGTCTGTTCTGCAGCATGCTCTACAATC
TTCCACTATGGATTTGGCGACCTGTGAGATGATGATCAAGGATACTCGTT
TCATGTTACAAGAGCATTTCGTATGTAGTGGCATTATTTCCATCCCAAGA
TCTTGTAACTCTGTCGCACATGACTTAGCAAAGCTTGCTATGAGTTGGGA
CCCAGGTAACCTATATGTTTGGGCACACCGCCTCCCATAA
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protein sequence of Sh_002I19_p000040

>Sh_002I19_p000040 ID=Sh_002I19_p000040|Name=Sh_002I19_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=280bp
MNISRRGVRLDTRCPVCFRFDEDGGHCFLKCKMIRRCWAALSLEPIRQML
LLKRSAWEVIVTVLGLKEDVCIKTMLLLWRWWSVRNKVNQGEKGLSADEV
AADVLKLISDMGSTERQQPIHREAAVKKWNAPPQGQLKINTDGSFIPEML
QGCWGFIVRDHEGGAVLAGAGRLGAAPDALSTEATACQQALQAATDYRIS
RIQVEVDSSVLQHALQSSTMDLATCEMMIKDTRFMLQEHFVCSGIISIPR
SCNSVAHDLAKLAMSWDPGNLYVWAHRLP*
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mRNA from alignment at Sh_002I19:37400..40754+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I19_t000040 ID=Sh_002I19_t000040|Name=Sh_002I19_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=3355bp|location=Sequence derived from alignment at Sh_002I19:37400..40754+ (R570 Sugarcane cultivar)
ATGAACATTAGTCGACGTGGAGTGCGACTGGACACAAGATGCCCTGTATG CTTCCGCTTTGATGAGGATGGTGGCCACTGTTTTCTCAAATGCAAAATGA TTAGACGCTGCTGGGCTGCTCTCTCCCTTGAACCGATTCGTCAAATGCTC TTATTAAAACGATCGGCTTGGGAGGTGATAGTTACTGTACTTGGCTTGAA GGAGGATGTCTGCATCAAGACGATGCTCCTACTCTGGCGCTGGTGGAGTG TGCGAAATAAGGTGAACCAAGGAGAGAAGGGGCTGTCTGCGGATGAAGTA GCTGCTGATGTTCTGAAGCTGATCAGTGATATGGGGTCTACCGAAAGACA GCAGCCGATCCATCGTGAGGCTGCCGTGAAGAAATGGAACGCCCCACCGC AGGGACAGCTTAAAATCAATACTGATGGCTCCTTCATTCCGGAGATGCTC CAAGGCTGCTGGGGCTTCATTGTACGTGATCATGAAGGTGGTGCAGTCCT GGCCGGGGCTGGACGGTTGGGTGCGGCACCAGATGCACTCAGTACCGAGG CTACAGCTTGCCAACAAGCTCTCCAAGCGGCCACTGATTATCGTATATCA CGCATTCAGGTTGAGGTTGATTCGTCTGTTCTGCAGCATGCTCTACAATC TTCCACTATGGATTTGGCGACCTGTGAGATGATGATCAAGGATACTCGTT TCATGTTACAAGAGCATTTCGTATGTAGTGGCATTATTTCCATCCCAAGA TCTTGTAACTCTGTCGCACATGACTTAGCAAAGCTTGCTATGAGTTGGGA CCCAGGTAACCTATATGTTTGGGCACACCGCCTCCCATAATTTGTAAATA CTCTAGTCGCTCGCGATTTAGTCGAGCCAATGTTTCCAATGGAAAGGCCA TAGAGCCTACCTTTGTTTCAAAAAAAAAAACAATGCCCGTCTGTGAATCT CACTTCTGTATAAAGATCATTTATAATTTGGACCCTACGGTGTTGTAAAT TTATCAAGCCTTTGTACTTTGTAACTTCTTTCCAGTCCGTGGATGCAACG ACCTAAGTGGATATGAATTAGAAAATATTTAAAGCGAAGTTTGGAAGAAT CAGTAGCTCAAGTATGCAAATACCATGCATTGAAATATTTTAATTACGTC AGGCCGCTCCCTCCTCTAATCCCTCCGCTCACCAGGCTCCGCCGTCGCCG GTCACAAAAGGACGCCCGCGCCTCTCACCATCGGCGCGACGCCATCCAGC TCCGCAGGTCGCCAATCACGGTCGCCGCGGCTCCATCCACGTCTGCACCA TTCCTCAGTCGTCTTCTTCATCCCAATCGTTCGAATCTGGTGTCTTCGTC TCCTCTGGGTGGCCGACGTGCATGCTGCCAGTGAACGGAGACCGTGACTC TCACCTAAACGACCTGCAGGTTAGCGGCCCTTCTCCCTATCCCTTCTGAC ATGAGTTCGATTTGGATTCACTCCTTGGTTCGTCTTCCACCACCCCCCCA CCCCCAAATCCTCCATGGATGCTCTTGTGCGGAGAGGAGCGACAGTCGTC CCGGCGCAGGGTCGGATCTCGCGGAGCGGCGGCCGGCCAGCCTGGGGGCG GAGCTCGTTGTGCAGACACGGCGGCCAGACCGCCGAGGCGCACCGCGCGT GGAGCGGAAAGGCAGCCGGCCCACCGGGGGTGGACCTCGCGGAGAGGAGC CGGCCTGCCGGGGGCGGCGTGAAGCGGCGGCCGTCCCTGCCGGGGGCTTC TTCGTCAAGTTCATTTGGATTCGCTCCTTGTCCATATGTGCAGATCCGTC AAGCGACTCGGCCTCCCATGTCAATCAGCAGTCGGTGCATCCAACTACAC GAGGAACTTGAGAGAGTGGCATCACCGGCCACGCAGCGGAGGCTCGATCC GGTAGGAGCTCCTCCAGGCATGTTTCACGTTCAGTGCCGGAGGCTCCCAC ACGAGTGGTGGAAAAGGAAATAACCGAAGCAAAGTTTTACCCTCGTAGAA ATCCCTCGTAGAAATTCTGGAATAAATATTTGTGGATTCTGTGATGATCC ACTGATCTGCAACTGAACACTATTGCCAATGCTATCGAGAAATGAAATTG ATCTGGTCGATCACGTGAGTATTTTCAATCTTATTTTATCCGTTGATTTT TACTACTGTACGGTGTAGGATGATCAACCTGCTGCATGATGGTTGGACCA GGCAGCGGAGTAGAGGGTATTTCTTTTATGATTGACCGGTGGAAACCTGC TCGTATGCTCATGTAGCAACATCGAAGGGATTTTAACATGCTCATTTGCT CAGGTAGCAAGACTGGCGGGAATGGTTGCAATGGGCCTTAGTTTCTCTGT CCGTCAATCAGGTATCTCCTATGCATTGTTCTTCACTTTTATATTCTTGG TTCTGAATGTAAGTTCAGTTCTAATTCATAATTAGAATGTGTGTATTTAC CTAGACAAAAGGATGAATAATTGGCATCAGTTTGCGCTTGCTGTGATGCA GAATCTACATTATGTGCTCCTAGAATAAATGATCAGGGCGATTTCAGATT TGCAATCTAGTGCATCCAGTGTGCCTAATATGGTTTTGGCGGCATGGACA TGGACGCAATAGAGGATGCAGTGGCGTTTCTGAGCTGCTGTCTCTGGTGC GTTTGGCCACTCATATGTACTGTTGCTGTCTTTGGGTGACTATTTTGAGT ATTTGTACCAGCAAATGCATTCCATGGCATTGGCATATATGCCTGAACCG GCTTTTGGACGTCTGAGTTTGCTGTTGCATATATGTGTGTGTACTTGTGT ATTTTAGCTCAAAGTTTTACTTCTACATATATTTTAGCCGTAATTATATT ATGCAATTTTATTCCTGGTGACTTTTTCTGAAAAGTACATACTATTCCAA AAAATGGATGAAGCATAATTCTTTCTTGTGCGCACACATCTGAATCTCGA ATTCATTTCCGTAAAATTTCCTCTGTGCCTTTCTCCTCTGTTTCTACTAA CTAGTTTCTTTATTGATGATTTGCATTTTCCGTATACAGAGCCACTTGGG TTAGAGTTGTTGATTGCCAGAGCATCAGATCAAATGGATATTCTAAATGG AAATGTTCTGAACTCAGTTGACAATAATTTAGGCCATAATGATGGTTTTA GTACTCTCAGGAGAACAGAGGCATAGTCATGGTTATTTCAAAGAAATGTG TGGTCATCTTGTATCGTTTGTGTTCAATAGTTCATGTAATATTGATGTAG TACCATCATTTTTTGTTATAATTCGACGATTTTATGTTGTAATATACAAG CACAAGTTTGATAGTGAGATGCTTGGTTTACTTATCGTAGTTACGCACAG TTTCA
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Coding sequence (CDS) from alignment at Sh_002I19:37400..40754+

>Sh_002I19_t000040 ID=Sh_002I19_t000040|Name=Sh_002I19_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=840bp|location=Sequence derived from alignment at Sh_002I19:37400..40754+ (R570 Sugarcane cultivar)
ATGAACATTAGTCGACGTGGAGTGCGACTGGACACAAGATGCCCTGTATG
CTTCCGCTTTGATGAGGATGGTGGCCACTGTTTTCTCAAATGCAAAATGA
TTAGACGCTGCTGGGCTGCTCTCTCCCTTGAACCGATTCGTCAAATGCTC
TTATTAAAACGATCGGCTTGGGAGGTGATAGTTACTGTACTTGGCTTGAA
GGAGGATGTCTGCATCAAGACGATGCTCCTACTCTGGCGCTGGTGGAGTG
TGCGAAATAAGGTGAACCAAGGAGAGAAGGGGCTGTCTGCGGATGAAGTA
GCTGCTGATGTTCTGAAGCTGATCAGTGATATGGGGTCTACCGAAAGACA
GCAGCCGATCCATCGTGAGGCTGCCGTGAAGAAATGGAACGCCCCACCGC
AGGGACAGCTTAAAATCAATACTGATGGCTCCTTCATTCCGGAGATGCTC
CAAGGCTGCTGGGGCTTCATTGTACGTGATCATGAAGGTGGTGCAGTCCT
GGCCGGGGCTGGACGGTTGGGTGCGGCACCAGATGCACTCAGTACCGAGG
CTACAGCTTGCCAACAAGCTCTCCAAGCGGCCACTGATTATCGTATATCA
CGCATTCAGGTTGAGGTTGATTCGTCTGTTCTGCAGCATGCTCTACAATC
TTCCACTATGGATTTGGCGACCTGTGAGATGATGATCAAGGATACTCGTT
TCATGTTACAAGAGCATTTCGTATGTAGTGGCATTATTTCCATCCCAAGA
TCTTGTAACTCTGTCGCACATGACTTAGCAAAGCTTGCTATGAGTTGGGA
CCCAGGTAACCTATATGTTTGGGCACACCGCCTCCCATAA
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