Sh_001C11_t000050

Overview
NameSh_001C11_t000050
Unique NameSh_001C11_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_001C11contigSh_001C11:70385..75036
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteProtein DETOXIFICATION
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_001C11_g000050Sh_001C11_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_001C11_p000050Sh_001C11_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_001C11_t000050 ID=Sh_001C11_t000050|Name=Sh_001C11_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1464bp
ATGGGCACGGCGAGCGATCAGCAGAACACGCCGCTCCTGTCGGCAGATGG
CGGCAGCGGCGGCGAAGGCGTGGTGGCGCTGCCGGGCGAAGCTGGCGGCA
GCGGGCACGGGGTGAGCGCGCAGCTGGAGCGTATCCTCGCCGACGAGTCG
GCGCCCCGTGCACAGCGGCTGGCGCGCGCGGCGCGGGTGGAGCTCCGCCT
GCTGGTGGCACTGGCCGCGCCGGCCGTGGCCGTCTACATGATCAACTACT
CCATGTCCCTGTCTACCAGGATCTTCTGCGGGCAGCTCGGCACTCTGGAG
CTCGCCGCCGCCTCGCTCGGCAACGTCGGTATCCAGGTCTTCGCATACGG
CCTCATGCTGGGCATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGT
ACGGCGCGCACAAGTACGACATGCTGGGCATCTACATGCAGCGCTCCTTC
GTCCTGCTCACCGCCACCGGCGTCCCGCTCGCCGTCATCTACGTGTTCTC
GAAGCAGATCCTGCTGCTGCTGGGGGAGTCGGAGCGGATCGCCTCGGCGG
CCTGGGTGTTCGTGCTCGGCCTCATCCCGCAGATCTTCGCCTACGCCTTC
AACTTCCCCATCCAGAAGCTGGGGCTGGGCCTGCTGGGCGCGTCGCTGAT
CCTCAGCCTCAGCTGGTGGGTCATCGTCGCCGCGCAGTTCGTGTACATCG
TCAGGTCCCAGAGGTGCCGCCGGACGTGGACGGGCTTCTCCTGCAGGGCG
TTCTCTGGCTTGCCGGAGTTCCTCAAGCTCTCGTTCGCGTCGGCGGTCAT
GCTTTGCCTCGAGACGTGGTACACGCAGATCACCGTGCTCATAGCGGGCT
TGCTCAAGGACCCGGAGATCGCCCTTGATTCTCTTGCTGTCTGCATGTCC
ATATCAGGATGGGTGTTCATGGTGTCGGTAGGCTTCAACGCTGCTGCTAG
CGTGAGGGTGAGCAACGAGCTCGGAGCCGGGCACCCCATGGCGACATCTT
TCTCTGTCAAGGTCGTGACAACGCTGTCTTTGATGGTGGCGTCCATTATA
GCAGTCATCGTTATGTGCCTCCGCGACTACATCAGCTACGTCTTCACCAG
AGGGGATGACGTCGCGCGCGCCGTGTCCACCATGACCCCGCTGCTCGCCG
TCACCATCGTGCTCAATGGCATTCAGCCCGTCCTATCTGGTGTGGCGGTT
GGCTGCGGGTGGCAGGCGTTCGTGGCATATGTGAACATCGCTTGCTACTA
CGGCATTGGGATTCCTCTTGGCTGCGTTTTGGGATTCTACTTTGATCTAG
GTGCCATGGGAATATGGGGTGGAATGATAGGTGGATTGATTGTTCAGACG
CTTATTCTTACCTGGGTCACACTTCGCACTGATTGGAATAAAGAGGTAGA
ACAAGCGCGCATGAGGCTAAATAAATGGGATGACAAAAAGAAGCACCTTT
TGGCCGAAGATTGA
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protein sequence of Sh_001C11_p000050

>Sh_001C11_p000050 ID=Sh_001C11_p000050|Name=Sh_001C11_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=488bp
MGTASDQQNTPLLSADGGSGGEGVVALPGEAGGSGHGVSAQLERILADES
APRAQRLARAARVELRLLVALAAPAVAVYMINYSMSLSTRIFCGQLGTLE
LAAASLGNVGIQVFAYGLMLGMGSAVETLCGQAYGAHKYDMLGIYMQRSF
VLLTATGVPLAVIYVFSKQILLLLGESERIASAAWVFVLGLIPQIFAYAF
NFPIQKLGLGLLGASLILSLSWWVIVAAQFVYIVRSQRCRRTWTGFSCRA
FSGLPEFLKLSFASAVMLCLETWYTQITVLIAGLLKDPEIALDSLAVCMS
ISGWVFMVSVGFNAAASVRVSNELGAGHPMATSFSVKVVTTLSLMVASII
AVIVMCLRDYISYVFTRGDDVARAVSTMTPLLAVTIVLNGIQPVLSGVAV
GCGWQAFVAYVNIACYYGIGIPLGCVLGFYFDLGAMGIWGGMIGGLIVQT
LILTWVTLRTDWNKEVEQARMRLNKWDDKKKHLLAED*
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mRNA from alignment at Sh_001C11:70385..75036-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_001C11_t000050 ID=Sh_001C11_t000050|Name=Sh_001C11_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=4652bp|location=Sequence derived from alignment at Sh_001C11:70385..75036- (R570 Sugarcane cultivar)
ATGGGCACGGCGAGCGATCAGCAGAACACGCCGCTCCTGTCGGCAGATGG CGGCAGCGGCGGCGAAGGCGTGGTGGCGCTGCCGGGCGAAGCTGGCGGCA GCGGGCACGGGGTGAGCGCGCAGCTGGAGCGTATCCTCGCCGACGAGTCG GCGCCCCGTGCACAGCGGCTGGCGCGCGCGGCGCGGGTGGAGCTCCGCCT GCTGGTGGCACTGGCCGCGCCGGCCGTGGCCGTCTACATGATCAACTACT CCATGTCCCTGTCTACCAGGATCTTCTGCGGGCAGCTCGGCACTCTGGAG CTCGCCGCCGCCTCGCTCGGCAACGTCGGTATCCAGGTCTTCGCATACGG CCTCATGGTAACGTTAACGTGCCTTTGATTTCTTCATCGCTGCCAACAGA TGTGTGTTTTGTTCTTGCTACTGAACATTTGGTAGTTGCATTGCAGCTGG GCATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCAC AAGTACGACATGCTGGGCATCTACATGCAGCGCTCCTTCGTCCTGCTCAC CGCCACCGGCGTCCCGCTCGCCGTCATCTACGTGTTCTCGAAGCAGATCC TGCTGCTGCTGGGGGAGTCGGAGCGGATCGCCTCGGCGGCCTGGGTGTTC GTGCTCGGCCTCATCCCGCAGATCTTCGCCTACGCCTTCAACTTCCCCAT CCAGAAGTTCCTGCAGGCGCAGAGCATCGTGGCGCCCACGCGCCTACATC TCTGTGGCGACGCTGGCCGCGCACCTGCTCCTCAGCTGGTTCGCCGTCTA CAGGCTGGGGCTGGGCCTGCTGGGCGCGTCGCTGATCCTCAGCCTCAGCT GGTGGGTCATCGTCGCCGCGCAGTTCGTGTACATCGTCAGGTCCCAGAGG TGCCGCCGGACGTGGACGGGCTTCTCCTGCAGGGCGTTCTCTGGCTTGCC GGAGTTCCTCAAGCTCTCGTTCGCGTCGGCGGTCATGCTTTGCCTCGAGA CGTGGTACACGCAGATCACCGTGCTCATAGCGGGCTTGCTCAAGGACCCG GAGATCGCCCTTGATTCTCTTGCTGTCTGGTATGTTCTGTTAATAGTTAA TTAATTACTGACAATTGTTTCTTGGATGGACACGTGTTAATGCCTTTAAT TGTTCCCCATTCACATGCTATACTATCGACTCGATCAGCATGTCCATATC AGGATGGGTGTTCATGGTGTCGGTAGGCTTCAACGCTGCTGCTAGGTACC TCTAACTTTGTGTATACCACACTGCTGCTCACACAGCACTCAATTAGATC AACAAAATCAACACGTGCTAGCTGTATATATGTATATATCATGAGTGCGA ACGTATACGACGACGACGTTGCAGCGTGAGGGTGAGCAACGAGCTCGGAG CCGGGCACCCCATGGCGACATCTTTCTCTGTCAAGGTCGTGACAACGCTG TCTTTGATGGTGGCGTCCATTATAGCAGTCATCGTTATGTGCCTCCGCGA CTACATCAGCTACGTCTTCACCAGAGGGGATGACGTCGCGCGCGCCGTGT CCACCATGACCCCGCTGCTCGCCGTCACCATCGTGCTCAATGGCATTCAG CCCGTCCTATCTGGTATATACATTATATACTCCTACTCCTATATGTTTAG TACTTCGTTTCTCAATTGAAAATCATTTTGGCTTTTCGGTACATAGCTAT ATATGTATCTAGATATAAACTATGTCTTAATACATAGTAAAAACTACTCT GTTTCATAATAGATGACGTTGTAGAATCTGTCATAGTTATCAATGTTGAA AGGCAAAAGACTTTGAGAGGGGCATCATCAAGGAAGGGGTCATCGGCCGT GTAAGGGCGGGCCACTACACTCACCTGGGGGCCGCCTCGGCACCTGGCGC CCCCGTCTTGGTGTCATACCAATCCGCTTTGGTGTCGTCCTCTAGCCGCA CTACTTGGACATCGCTAGCGGCTGGCCACCGAGAGGTGGCCTAGAATGGG AGGAAAGTGGATCCTACCGCCCTTGTGTTGGGGAGAAATCACGATGGAGG GTGCGAGTGTTGTGTGCGAGGCAATCGCAATGGAAGGGATAAGGCTCCTC CCACCACAAGAACTTTTTCCTTTTTTATTCACCTTAGGCCACAGGATAAA CAACAACAAGATGGGTAGACTGATGGTATGGTTGGGTGGAACTTGCATGT TAGGCTATAGTGTTAAGTATTTTGGTACAAAATTTGAATGCTAAAGTCAG TATTGTGAGACGGAGGCCAGAGGAGTATGAATCTTGAAAACCAAAAAAGA ATTATAATCTGGAACAAAGAAAGTAGTAGGGGAGCAGGCGCCAACTTCGA GAGGGACGTCATCAGGGAAGGTGTCATCAGCCATGGAAGGGCAAGCCACT ACCCTCATCTGGTGCCGCCTCAGCGCACCTGACGCCCTGTTTTGGTGTCG GACCGATCCGCTTGGTGTCGTCCTCTAGCCGCACCACCTGGACATCTCTA GCAGGTGGCTGCTGAGAGGGTGGCATAGAATGGGAGGGAAGCAGATCCCA CCGCCCTTGCATTGGGGAGAAACAATGATGGAGGGTGCGAGCATAGTGTG CGAGACAATCACAATGGAAGGTATAAGGCTCCTCCCACCAGCCACCACAA GAACTTTTTCCCTTTTTATTCACCTTATGCCACTGGATGGCAACAACAAC AAGACGGATGGACTGATGGTATGATTGGGTGGAACCTGCATGTTAGGCCA GAAATACGAAACCATAGCGGGGTGGGCGCCCTCTCTGTATCTCTCAACGT CTATTTCACATTAAGATTCGTGCTGGAGTGCTCCAAAATCCGTGCCCAAG TGTTTTTTTTACCTGCACGAATCACGGAACAAACTGAACCACCCCAGTGT GGAAATTGCAAGTTGCATGTTAGGCTTAGTGTTAAGTATTCTATAGTGTT AAGTATTGTCATATACGAAATCTGAATGCAGTATTATAAGACAGAGGCCA GAGGGAGTAGAAATCTAGAAAAAACAAAATAAATTATAATTGGAACGAAG AAAGTTGTAACTTCATTTGCTCCATATATGGTGGCGTGTCAATCATTTTC AGATTACTATATAGGACCATACGTCAATCATTTTCAGATTCCCATGGTGG CGTGTTCTTTAGCAGCTAGTACTTAGCGTTGCCTGGGTTTGTCTTACTAG CTTTAATCGACTGGTGGCTTGAGTAGTGGTTGAAATGATGACACTGATCT TTTATCTATTTCTTCCTTTGCAGGTGTGGCGGTTGGCTGCGGGTGGCAGG CGTTCGTGGCATATGTGAACATCGCTTGCTACTACGGCATTGGGATTCCT CTTGGCTGCGTTTTGGGATTCTACTTTGATCTAGGTGCCATGGTAAAGTT GTAGATTAATTTCCTATTAGAAAATCCCACTCTTTCAGTTATATATATAT ATATATATATATATATATATATATATAGTTCGAGGAGATAACGGCAACCC ACATGTGTACATGCATGCAGGGAATATGGGGTGGAATGATAGGTGGATTG ATTGTTCAGACGCTTATTCTTACCTGGGTCACACTTCGCACTGATTGGAA TAAAGAGGTTTGCAACGTTTTCACAACCTTATGCATCTACTTTTAAAAGG ACACACATAGAACATATTCTTTACACCCTTTTATTCTGAATATAAGCCTT TTGATACATTAGCCACATAACCGGGCGATTTCAGTATGAAACTAGCTTTG ACTTGCAACTTTTTTGGAATATTTATAGCATTGAGAAGTTTTTCCACGAT GAAGAATCTAGTACCATCAATCATGTGTTGCCAATTAATCTATATGGTCT TCATACATATATTAATGGGTCAAGTCAAATAAGTTTGACCAACTAAAACT CTGAATCAATCTTTATTTGGAATCAGATGGAGTATACATGTATGTTGCAA TTTATGTATTTTATATGAGTTAAGTATATATATGTGTCATATTGTTATCA CTTCATCAGTAACTTGGAAAAATATATATGCAAATGGAAGGTTCAGGAGT ACAATAGTATTCTACACCAAACTGTTATAATGAACCAAAATTCAGTACTA TTCAATAGTCACGTTTCAGTATTATTCAGTATTTCTTGGTATTGTGCATA GTACTAACTGATAATGAACGATGTTCAGCAGTACTCAATATTTTTTTAGG TCAGTTTTGCCTTGCGGTACCACTGCCGAGGTTCAGAGTACATATTTGGT TCTATACATTTATTTTGCTGACAATATAATGATCTGGAATTATTTAGAGA AAGAAACAATAAACTACTGTTAACTTTGCATATACATTTAACTTTGTACG TATTGTATTACAGGTAGAACAAGCGCGCATGAGGCTAAATAAATGGGATG ACAAAAAGAAGCACCTTTTGGCCGAAGATTGAAAAAGTTATATGGATTGT GCACGCGGTCCACTATGCATGTTATGCATGGTACTGATGAAGATTGAAAA ATAAGTAGTTAGCTTGTTTGGCACTGAAATGGTGAAACTGAAATTCGAAC AAGAAGAGACTAATGGCTCTCTTGCGCGAAGTTCTTTTTTTTTCCTGAAT TGTGTGTCATGACTCTCACGACAAAAAGAAAGCTACAACAGAGAATTGGC TT
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Coding sequence (CDS) from alignment at Sh_001C11:70385..75036-

>Sh_001C11_t000050 ID=Sh_001C11_t000050|Name=Sh_001C11_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=1464bp|location=Sequence derived from alignment at Sh_001C11:70385..75036- (R570 Sugarcane cultivar)
ATGGGCACGGCGAGCGATCAGCAGAACACGCCGCTCCTGTCGGCAGATGG
CGGCAGCGGCGGCGAAGGCGTGGTGGCGCTGCCGGGCGAAGCTGGCGGCA
GCGGGCACGGGGTGAGCGCGCAGCTGGAGCGTATCCTCGCCGACGAGTCG
GCGCCCCGTGCACAGCGGCTGGCGCGCGCGGCGCGGGTGGAGCTCCGCCT
GCTGGTGGCACTGGCCGCGCCGGCCGTGGCCGTCTACATGATCAACTACT
CCATGTCCCTGTCTACCAGGATCTTCTGCGGGCAGCTCGGCACTCTGGAG
CTCGCCGCCGCCTCGCTCGGCAACGTCGGTATCCAGGTCTTCGCATACGG
CCTCATGCTGGGCATGGGCAGCGCGGTGGAGACGCTGTGCGGGCAGGCGT
ACGGCGCGCACAAGTACGACATGCTGGGCATCTACATGCAGCGCTCCTTC
GTCCTGCTCACCGCCACCGGCGTCCCGCTCGCCGTCATCTACGTGTTCTC
GAAGCAGATCCTGCTGCTGCTGGGGGAGTCGGAGCGGATCGCCTCGGCGG
CCTGGGTGTTCGTGCTCGGCCTCATCCCGCAGATCTTCGCCTACGCCTTC
AACTTCCCCATCCAGAAGCTGGGGCTGGGCCTGCTGGGCGCGTCGCTGAT
CCTCAGCCTCAGCTGGTGGGTCATCGTCGCCGCGCAGTTCGTGTACATCG
TCAGGTCCCAGAGGTGCCGCCGGACGTGGACGGGCTTCTCCTGCAGGGCG
TTCTCTGGCTTGCCGGAGTTCCTCAAGCTCTCGTTCGCGTCGGCGGTCAT
GCTTTGCCTCGAGACGTGGTACACGCAGATCACCGTGCTCATAGCGGGCT
TGCTCAAGGACCCGGAGATCGCCCTTGATTCTCTTGCTGTCTGCATGTCC
ATATCAGGATGGGTGTTCATGGTGTCGGTAGGCTTCAACGCTGCTGCTAG
CGTGAGGGTGAGCAACGAGCTCGGAGCCGGGCACCCCATGGCGACATCTT
TCTCTGTCAAGGTCGTGACAACGCTGTCTTTGATGGTGGCGTCCATTATA
GCAGTCATCGTTATGTGCCTCCGCGACTACATCAGCTACGTCTTCACCAG
AGGGGATGACGTCGCGCGCGCCGTGTCCACCATGACCCCGCTGCTCGCCG
TCACCATCGTGCTCAATGGCATTCAGCCCGTCCTATCTGGTGTGGCGGTT
GGCTGCGGGTGGCAGGCGTTCGTGGCATATGTGAACATCGCTTGCTACTA
CGGCATTGGGATTCCTCTTGGCTGCGTTTTGGGATTCTACTTTGATCTAG
GTGCCATGGGAATATGGGGTGGAATGATAGGTGGATTGATTGTTCAGACG
CTTATTCTTACCTGGGTCACACTTCGCACTGATTGGAATAAAGAGGTAGA
ACAAGCGCGCATGAGGCTAAATAAATGGGATGACAAAAAGAAGCACCTTT
TGGCCGAAGATTGA
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