Sh_002I17_t000100

Overview
NameSh_002I17_t000100
Unique NameSh_002I17_t000100
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:67859..68355
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000100Sh_002I17_g000100R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000100Sh_002I17_p000100R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000100 ID=Sh_002I17_t000100|Name=Sh_002I17_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=447bp
ATGGATAATAACGTTGGATCAAGCACTGCTAAGAATTTTTATGTTCGACC
TTTAAAGAAAGCAAAATGTACTGAATTTGATATGTTGGAATCGGATAAAA
TGAAAAATGTTCATCCAATGCCTTCAACTGCATCACCAACCAGAGAGACA
TTATCTTCAGTTTGTGAATTCAAAGATAAGCAGATAAGTCATGAAAAACA
TTCAGGTGAACTTATTATTGTTGATCCAACCATGAGTACTGAGGATATAA
AGCTAATCCATATTAAATTATATGCAAATTATACATTGACCAATATGGAC
TTATGTGCCCAAATAATAATAGAAACATCTTCGAAAGACGATCTACTGGT
GAAGATGGATGAAATATCTATGAAACAACATCAATTGTTGTGCCTCCTAG
ACCAAAGCAAATGGTTAGATGATGATGTAAGTACACCTAATGATTAG
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protein sequence of Sh_002I17_p000100

>Sh_002I17_p000100 ID=Sh_002I17_p000100|Name=Sh_002I17_p000100|organism=R570 Sugarcane cultivar|type=polypeptide|length=149bp
MDNNVGSSTAKNFYVRPLKKAKCTEFDMLESDKMKNVHPMPSTASPTRET
LSSVCEFKDKQISHEKHSGELIIVDPTMSTEDIKLIHIKLYANYTLTNMD
LCAQIIIETSSKDDLLVKMDEISMKQHQLLCLLDQSKWLDDDVSTPND*
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mRNA from alignment at Sh_002I17:67859..68355+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000100 ID=Sh_002I17_t000100|Name=Sh_002I17_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=497bp|location=Sequence derived from alignment at Sh_002I17:67859..68355+ (R570 Sugarcane cultivar)
ATGGATAATAACGTTGGATCAAGCACTGCTAAGAATTTTTATGTTCGACC TTTAAAGAAAGCAAAATGTACTGAATTTGATATGTTGGAATCGGATAAAA TGAAAAATGTTCATCCAATGCCTTCAACTGCATCACCAACCAGAGAGACA TTATCTTCAGTTTGTGAATTCAAAGATAAGCAGATAAGTCATGAAAAACA TTCAGGTGAACTTATTATTGTTGATCCAACCATGAGGTTTTTTTTCATTT ATATCTGTTCTTTGGTATGTAATCTTTTGATTATAGTACTGAGGATATAA AGCTAATCCATATTAAATTATATGCAAATTATACATTGACCAATATGGAC TTATGTGCCCAAATAATAATAGAAACATCTTCGAAAGACGATCTACTGGT GAAGATGGATGAAATATCTATGAAACAACATCAATTGTTGTGCCTCCTAG ACCAAAGCAAATGGTTAGATGATGATGTAAGTACACCTAATGATTAG
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Coding sequence (CDS) from alignment at Sh_002I17:67859..68355+

>Sh_002I17_t000100 ID=Sh_002I17_t000100|Name=Sh_002I17_t000100|organism=R570 Sugarcane cultivar|type=CDS|length=447bp|location=Sequence derived from alignment at Sh_002I17:67859..68355+ (R570 Sugarcane cultivar)
ATGGATAATAACGTTGGATCAAGCACTGCTAAGAATTTTTATGTTCGACC
TTTAAAGAAAGCAAAATGTACTGAATTTGATATGTTGGAATCGGATAAAA
TGAAAAATGTTCATCCAATGCCTTCAACTGCATCACCAACCAGAGAGACA
TTATCTTCAGTTTGTGAATTCAAAGATAAGCAGATAAGTCATGAAAAACA
TTCAGGTGAACTTATTATTGTTGATCCAACCATGAGTACTGAGGATATAA
AGCTAATCCATATTAAATTATATGCAAATTATACATTGACCAATATGGAC
TTATGTGCCCAAATAATAATAGAAACATCTTCGAAAGACGATCTACTGGT
GAAGATGGATGAAATATCTATGAAACAACATCAATTGTTGTGCCTCCTAG
ACCAAAGCAAATGGTTAGATGATGATGTAAGTACACCTAATGATTAG
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