Sh_001B04_t000020

Overview
NameSh_001B04_t000020
Unique NameSh_001B04_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length948
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_001B04contigSh_001B04:13790..16278
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteSanguinarine reductase
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_001B04_g000020Sh_001B04_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_001B04_p000020Sh_001B04_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_001B04_t000020 ID=Sh_001B04_t000020|Name=Sh_001B04_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=948bp
ATGGCGGATTCGGCCGCTTCCCGTCCAACCGTCCTCGTCACCGGCGCCGG
GGGCCGCACAGGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCCGAGA
AGTTCGTGGCAAGAGGGCTAGTCAGGACAGAGGAGAGCAAGCAGAAGATT
GGGGGAGCCAGTGATGTTTACATTGCGGATATAAGAGACGCAGATCGTCT
AGCTCCTGCTGTACAAGGGGTCGATGCGCTCATAATCCTCACCAGTGCAG
TCCCAAAAATGAAACCGGGTTTCGACCCTAGCAAAGGTGGGCGGCCTGAG
TTCTACTATGAAGATGGAATGTACCCTGAGCAGGTGGATTGGATTGGCCA
AAAGAATCAGATTGATGCTGCTAAAGCTGCTGGAGTGAAGCATATTGTGT
TGGTGGGATCTATGGGAGGAACAAATCCTAACCATCCGCTGAACAGCCTG
GGTAATGGCAATATACTGGTATGGAAGCGCAAGGCAGAACAGTATTTGGC
AGACAGTGGAGTCCCTTATACAATCATAAGGCCAGGAGGTCTACAAGACA
AGGATGGAGGAGTGAGAGAGTTAATTGTGGGGAAAGACGATGAACTTCTC
CAGACTGACACAAAGTCGATTCCTAGAGCCGATGTGGCTGAGGCTCTGCA
GTATGAAGAGGCCAAGTTCAAGGCATTTGATTTGGCCTCAAAGCCTGAAG
GTGTGGGGCACGCCAACAAAGGACTTCCGGGCACTGTTCTCCCAGGTCAC
TGCTCGGTTTTGAGTGAGCTGCTGAGAAGCCTACTCCAAGTTCTAGATTT
CATGGTGTCTGGAGATATAACCAGGGAGCTTGAGCATGGAGCTGCAGTTT
GGTGCAATTGCAAAGCTGTATTAAAACTGAAGAAAGAAATTGGTGCATTG
TTTGCAGTACACTGCCAAATGTCTAGTTGCCGTTGCGTAAACTGTTAA
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protein sequence of Sh_001B04_p000020

>Sh_001B04_p000020 ID=Sh_001B04_p000020|Name=Sh_001B04_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=316bp
MADSAASRPTVLVTGAGGRTGQIVYNKLKERSEKFVARGLVRTEESKQKI
GGASDVYIADIRDADRLAPAVQGVDALIILTSAVPKMKPGFDPSKGGRPE
FYYEDGMYPEQVDWIGQKNQIDAAKAAGVKHIVLVGSMGGTNPNHPLNSL
GNGNILVWKRKAEQYLADSGVPYTIIRPGGLQDKDGGVRELIVGKDDELL
QTDTKSIPRADVAEALQYEEAKFKAFDLASKPEGVGHANKGLPGTVLPGH
CSVLSELLRSLLQVLDFMVSGDITRELEHGAAVWCNCKAVLKLKKEIGAL
FAVHCQMSSCRCVNC*
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mRNA from alignment at Sh_001B04:13790..16278-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_001B04_t000020 ID=Sh_001B04_t000020|Name=Sh_001B04_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2489bp|location=Sequence derived from alignment at Sh_001B04:13790..16278- (R570 Sugarcane cultivar)
GACCTTGTAGACGGTTCTCAAACCACCTCCGCGGTCCGAGGCTATCTGCA CCACCGACCGAGAGGGGGAGTCCAGCACGAATCGAATCGTCGCGAGAGGT CATGGCGGATTCGGCCGCTTCCCGTCCAACCGTCCTCGTCACCGGCGCCG GGGGCCGCACAGGTAGGTAGCTCTGCCTTTCCCGTCAGTTCCGGTAGCGC AGCATTTAGGCCTCGCAGTCGTCGCGCGTGCTTCAGTACTGCTTCGTAGG GAAGTGAAGAACCAGAGAGATGATGATCAGTCGATTTGCCTGTTGTTCAA GCCTGCTGAGATGGGGATTTTGGCTGGCTAGAGTGGTTAGGGAATGGTGA TCCAAATGGGAACGGCCTTTTGCTCAATTTGGCTGCCGTCTTGTACAGTT TAGTGCTGAATTCTAACGCTAGTAAGGGTGCAGTGGGTGCGTAGCAATTT CTGCAACTGAGTTCCTCTTTGCATTCACTGCTCACTCGGGAGTTAACTTG ATGTTAGGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCCGAGAAGTT CGTGGCAAGAGGGCTAGTCAGGACAGAGGAGAGCAAGCAGAAGATTGGGG GAGCCAGTGATGTTTACATTGCGGATATAAGAGACGCAGATCGTCTAGCT CCTGCTGTACAAGGGGTCGATGCGCTCATAATCCTCACCAGTGCAGTCCC AAAAATGAAACCGGGTTTCGACCCTAGCAAAGGTGGGCGGCCTGAGTTCT ACTATGAAGATGGAATGTACCCTGAGCAGGTGGGTTGATGAATCTTGTCC AAGATTGTGTGCGCATTAGTAGAATTTGTTAGTGAACTGATAACATTGGT TGTGGTTGTTTTAGGTGGATTGGATTGGCCAAAAGAATCAGATTGATGCT GGTATGTGTTCATTCTGCTCAGTGCTTCACTTTCTGATTTTTTGGTAGAT CATATACTTCAGAGCATAAATGATTGTTAATTTGGACCTATATTGGCAGC TAAAGCTGCTGGAGTGAAGCATATTGTGTTGGTGGGATCTATGGGAGGAA CAAATCCTAACCATCCGCTGAACAGCCTGGGTAATGGCAATATACTGGTA AGCTAAAATCTGACTGTTCCATTAGGCAACTACTATTCACAAATTCTAAA AGTGGGATCTTGATTATTACATATGTTTGCTGTAGGTATGGAAGCGCAAG GCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATCATAAGGTA CAGAGTAGTATAGTACACAATATTTAAAACAGGTCGAAAATTCTACTGCT GCTTTTTATTATGGTAGTCTCGATTCAGTAGATTATTACTTTTTGTTTTG TGCATGTAAAGAAGTAAAACCTGGACTCTTAAGGGACAATGTGCTGATCC TTGTTTTTGGACAACTGAAAAAAAAATACTTTGTGTACTATCTAGTACAT CTCTAGTGTAAAGCCTGGAAATCGCATGAGGCTAATACAAAAGAAAATAT TCAATCTCATTTCCTTCTCTGTTACATAATCTGATGCTGCTTTCTTCTGT GCCTTAAATTTTAGGCCAGGAGGTCTACAAGACAAGGATGGAGGAGTGAG AGAGTTAATTGTGGGGAAAGACGATGAACTTCTCCAGACTGACACAAAGT CGATTCCTAGAGCCGATGTGGCTGAGGTTTGTGTCCAGGTATATATATAT ATATATATATATATATATATATGCTCTAAACCACCATCTATACAGATCTG TCTGAAAGGACCTGGTTAAAATTGTGTATAGCCATGGGTCGATTGGACGG CGTGGTGAGACAGCCATTCTGAGTTTAATCATTTTTGTTCTCTGATAATA GGCTCTGCAGTATGAAGAGGCCAAGTTCAAGGCATTTGATTTGGCCTCAA AGCCTGAAGGTGTGGGGCACGCCAACAAAGGACTTCCGGGCACTGTTCTC CCAGGTCACTGCTCGGTTTTGAGTGAGCTGCTGAGAAGCCTACTCCAAGT TCTAGATTTCATGGTGTCTGGAGATATAACCAGGGAGCTTGAGCATGGAG CTGCAGTTTGGTGCAATTGCAAAGCTGTATTAAAACTGAAGAAAGAAATT GGTGCATTGTTTGCAGTACACTGCCAAATGTCTAGTTGCCGTTGCGTAAA CTGTTAAGAGCCAATATGACAAGTAATTAGGAACCCCTGTTTGCATAAAT TGTTGGGCACAATTTATCCAGGCGCAGTTAGTCACCTGCTTGGATTCTTC AGCTGCAACTTCCCCCGTCGTTCCAATGACATATCCTAGTTAGTAGTTCC TCTACAAATTAGCGGTGAAAGCTGCAGCCATCCTGCTTGTTCTCTGAACA AGGCAGATATAGGAGCTTCATCGGACCCCCATGGCCATGGGAGTGCTGCT GCTGATGACTATCACCTCAAATGTTTTTAACTCACTGAAGCGATGATTTC AAACACTGAAACCATGTAGTGAAACTTTGTGGTGCTACT
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Coding sequence (CDS) from alignment at Sh_001B04:13790..16278-

>Sh_001B04_t000020 ID=Sh_001B04_t000020|Name=Sh_001B04_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=948bp|location=Sequence derived from alignment at Sh_001B04:13790..16278- (R570 Sugarcane cultivar)
ATGGCGGATTCGGCCGCTTCCCGTCCAACCGTCCTCGTCACCGGCGCCGG
GGGCCGCACAGGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCCGAGA
AGTTCGTGGCAAGAGGGCTAGTCAGGACAGAGGAGAGCAAGCAGAAGATT
GGGGGAGCCAGTGATGTTTACATTGCGGATATAAGAGACGCAGATCGTCT
AGCTCCTGCTGTACAAGGGGTCGATGCGCTCATAATCCTCACCAGTGCAG
TCCCAAAAATGAAACCGGGTTTCGACCCTAGCAAAGGTGGGCGGCCTGAG
TTCTACTATGAAGATGGAATGTACCCTGAGCAGGTGGATTGGATTGGCCA
AAAGAATCAGATTGATGCTGCTAAAGCTGCTGGAGTGAAGCATATTGTGT
TGGTGGGATCTATGGGAGGAACAAATCCTAACCATCCGCTGAACAGCCTG
GGTAATGGCAATATACTGGTATGGAAGCGCAAGGCAGAACAGTATTTGGC
AGACAGTGGAGTCCCTTATACAATCATAAGGCCAGGAGGTCTACAAGACA
AGGATGGAGGAGTGAGAGAGTTAATTGTGGGGAAAGACGATGAACTTCTC
CAGACTGACACAAAGTCGATTCCTAGAGCCGATGTGGCTGAGGCTCTGCA
GTATGAAGAGGCCAAGTTCAAGGCATTTGATTTGGCCTCAAAGCCTGAAG
GTGTGGGGCACGCCAACAAAGGACTTCCGGGCACTGTTCTCCCAGGTCAC
TGCTCGGTTTTGAGTGAGCTGCTGAGAAGCCTACTCCAAGTTCTAGATTT
CATGGTGTCTGGAGATATAACCAGGGAGCTTGAGCATGGAGCTGCAGTTT
GGTGCAATTGCAAAGCTGTATTAAAACTGAAGAAAGAAATTGGTGCATTG
TTTGCAGTACACTGCCAAATGTCTAGTTGCCGTTGCGTAAACTGTTAA
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