Sh_001B06_t000050

Overview
NameSh_001B06_t000050
Unique NameSh_001B06_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1017
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_001B06contigSh_001B06:26869..32375
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePentatricopeptide repeat-containing protein At1g76280
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_001B06_g000050Sh_001B06_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_001B06_p000050Sh_001B06_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_001B06_t000050 ID=Sh_001B06_t000050|Name=Sh_001B06_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1017bp
ATGCAAAAAATTGGATTGCAACCATCAAATTTTACATATGACGGCTTTGT
TAAGACTGTGATAGCTGGGAAAGGAATTGCATATGCCAACAAAGTGATTA
AAGCCATGGAGAGAAGGGGCATTGGACTTTACAGTGATACACTTGCTGCT
CTCTCAGTAGGGCATAGCAATAGTTCACAGTTGGATTTGGCTGAGGAACT
TTTGGAAAGAATTTCAGAGATAAAACCAAAGCATCTACGTGCCTTTAATG
CTTTGCTTTCTGGATGTGCGATTATGAATGAACCAGAAAGAGCTGTGCGC
ATACTAGCTAAAATGAAACATGTGAACATGAAGCCAACTCTCAGGACATA
TGAACTTTTGTTTTCTCTGTTTGGAAATGTAAATGTTCCTTATGAAGAAG
GAAATGTGCTCTCTCATGTTGATGTTTCCAAAAGGATAAGTATCATTGAG
ATGGACATGTTTAACAATGGAATCCAACACAGCTTTGTGTCTATGAAGAA
CTTGGTAAGTCTTCTTTCTATGTACTGTAGAGATCTAAGATATTTGGCAA
TAATACGAGCTTTTGGATCTGAGGGGATGATAGAGGAAATGCTGAGGTAC
CTGAATATAGCAGAAAATATTTTGTGGAACATAAATCCTTATCAGAAGAG
TGATCTATACAGCATTGCGTTGCATGCTCTGGTTGATGCGAAGGAAACTC
ACAGAGCAGTAATGGTCTTCAAAATCATGAGATCATGCAGCCTTCCAACT
AATATTTCAATTTATAATACCATGATAGAGTGCTGCAAATGGCTGCAATG
TTTCAAATCAGCTAGTGCTTTGCTGTCTTTGATGCTCCAAGATGGCTTCA
ATCCTACGGTTGTGACTCTTACATCACTCCTGAAGGTTGTATTAGCAAAT
AATAATTTTGAAGGGGCTCTGGATCTGCTTGATATATGCAAGATTGAAGG
ACTTCAGCCTGACATACATATTTTCAACACAGTACTCTCACGTGCATATG
CTAGAGTATGTTTATGA
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protein sequence of Sh_001B06_p000050

>Sh_001B06_p000050 ID=Sh_001B06_p000050|Name=Sh_001B06_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=339bp
MQKIGLQPSNFTYDGFVKTVIAGKGIAYANKVIKAMERRGIGLYSDTLAA
LSVGHSNSSQLDLAEELLERISEIKPKHLRAFNALLSGCAIMNEPERAVR
ILAKMKHVNMKPTLRTYELLFSLFGNVNVPYEEGNVLSHVDVSKRISIIE
MDMFNNGIQHSFVSMKNLVSLLSMYCRDLRYLAIIRAFGSEGMIEEMLRY
LNIAENILWNINPYQKSDLYSIALHALVDAKETHRAVMVFKIMRSCSLPT
NISIYNTMIECCKWLQCFKSASALLSLMLQDGFNPTVVTLTSLLKVVLAN
NNFEGALDLLDICKIEGLQPDIHIFNTVLSRAYARVCL*
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mRNA from alignment at Sh_001B06:26869..32375-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_001B06_t000050 ID=Sh_001B06_t000050|Name=Sh_001B06_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=5507bp|location=Sequence derived from alignment at Sh_001B06:26869..32375- (R570 Sugarcane cultivar)
ATGCAAAAAATTGGATTGCAACCATCAAATTTTACATATGACGGCTTTGT TAAGACTGTGATAGCTGGGAAAGGAATTGCATATGCCAACAAAGTGGTAT GCTACCAGCAGCTTTGCTCATATGATCCTGTAGCCTGAAAGGACATCTCT CTAAATTGATGATGACATACACCATTTTTTTTTTAATTTTTAATTAAACC AATTAGTTGTATTGCTCTGATTTCCATTAGGCCATGTTTGGTTGGAGGGG ATTGAATCCCCAAGTGGAACCAATCCAGAGAGGGATTGAGTGGATCCCTC CCTTGTCACTCAAACCCCTTGAGGATTAAATCCCTTCTTTCCCATTCTCA CTCTCCGTCCAAATGGTGTTCGGTTAATCCCTCTCTTCTTTCCCTGTTCA GTTGTGTTAGGTCGTCAAGCACAGTTCCAGCTTTTTTACATGGCTAGACA ATGAACTGAACATGACGAGAACATGGATCTATGGATCTAGACAATAAGCT CATAAATAAAATATTACAAGTCTCAAAAGACTAGTACGTCTCAAAAGAAC TGAACATGACGAGAGACATGGATCCTCGTCATGGATCTAGACAATGATGC ATTTTGCTATTTGGCAGAACAGCAGTGTACAGAAAACACCCTTCACCTTG TCAACCTCCTCTGGCAACTAGTCCGGTACATGCCTACCAACAAAAAGAAT TAGGGTCCCAAAGAATTATTAGTTTCTGACACAAATTGTCACATATGGGG ATGAAAAAAATAATTGCAATCGTATAATATACTCCCTCCGTTCCAAATTA TAAGTCGCTTTGACTCTTTTGGTACATCCATTTTACTATGTATCTAGACA TAACGTATTTCTAGATACATAGAAAAATGGATGTACCAAAAAAGTCAAAG CGACTTATAATTTGGAACGGAGGGAGGAGTAATTAAACAATATGAAATTG AAGTATGAGACATGTTTGCCTCAATGCAACCAAACACTAAAAAAATACAG TTACACTGACACAAAATTGCATTATGGCAATTGTCCTCTTTTCAGAGGTT AAGGCAAACAAATCGAAACATCATTTATACTATATAATATCATAAAACTA ATGGGGATAAGTAACACCATTCAGTGGCACTATAGTTAAACAAATAATAA GATAACTCGACACTATATAGAGAGCAATCACAATCGGCATTCGGAAATCA CACACAAACAGCTTCAGAAGCATGCAAGAACTAGTAGTACTCAAATCAGT GTCTGGCTGTCTGCAAGATATGCTTTATGTAACAACAAAAAGTAGAAGAA TGAAGAGTAGACAGATAGGCCTGAAAGAACTTTACTCCCACTTCATAATA TATACCATTGCATAATCAATCTCCAAGGGTATGTTGACTTGCCAACATTA AAATTCATGAGTAAACTTACTATCAGTTAATTTAGAACTCCATGCAACTT CTTTTTAATAAAATGCCAAGAAAAAATATGTTTAAAGTTGAGTAATAGTA GAATAAACATGAACTGGTCAGACATGCATACTAACGATTATTTTGTAGAT TCAGCAATCTAGATTGGTCATGGTTGGTTTGCACTAGTTTGCTTGAGACT TGGGGAGATGTCTGGTAACTCAAACATAGTAATAGTCTAACAGAGATCGC TAGAAGCAAAAAGGAGAAAAGCCATTGAAATCGAAACATTATGGTTAATC GTGATAGCTTGATGCATAGGCTGCATGCTGATGCATTAACATTCAATGAT GAACTGATGCATAAACTGAATATTCAGTATGCTGCAAGCTCTCATACAAA CAATGCCTATGCCTACTGTTCTAGCTAGTGTAATTATGAGATTCATACTG AAAATTCACAAGTAGAAGCGCTCGTAATAGTCAGGGATGAAAATAGAATT CACAAAATTGAGTCTTCCTTGCCGGTGTAAGAAAATAATGAATAAACCAA TTAATCTCTCGTGGATAAAAATAATCGAGCTGGATCAAACAAGCGTCATA GAACCGGCCGCTGAACTAGGTAGAACGGAGACAGACAGAACATTGCCTCA CTGGTCACCGCGGAGGTCACACGGTGTGCTTGTCAACTCAAGAACCCTAC AGCATGGAAGAGGTGAGGGGAAACTTACAGGCGAGAAGGTGGCTACCTGA GGGGACGGCCACCGCCGTGAAGATCGCCGCGTTGCCGTTGTCGAAGCCTC CAAATCTTGCCGCCACCGAGATGCCGTTGTACCTCGCCTTCGTGGCGATG CTTCCCCTCGGCGCTCGTAGCCGACGCGTCCCGTGAAGCGCTCCAGCCGT CGCGAGCCCTCCGCAACGATGCGAGGACCTAGTGACCTGGCAGCAGGTTG TGCGTTCGCCTCCGTGGGGAATTGTTCCGTGACTCATGCGGAGTGGGTGG AAACCAGGCTGGGGTGGAGGGTAATCGCCTGGAATAGGACGGGGTAGAAT CTTCGGGTCGGCTAACCAAACGCCACTTTCACGGTGAGCCGGGCTTGAAT CCGCTTCGGGAGCATCCCTGTGGATCGGGCCGCGAACCCCGTGGGGAATG GCCTAACTGAACAAGGCCTTAAAGTAGATTGAGACTCTGTCCGATTATTA TTAAGAATACTGCAATGTTAAGAATATTTTTACCTACTCTCCTAAAGCCA CTATGCAAAATTGAGCTATACCTGTAATATTGCTATTAAATCCTCGAACT ATGGTCCATTTTACTTGCTTAAGACATCGTTAGTCTTGAGTGTGCATGCC TGGCTATTGCATTTTCTATATGTCAACAAAACAATAAAACTATAATCTAG CAGCACTTTGATATTACATTATTACTTTTTACACGACAAATTTAAGTACT TTTACATGTATTGGAAATTTGAAAGGTTTGACTTCACAGTCCACATATCC GGACAATATCAATTTTATTTGGAGATAAATTATTTTCTCACGTATATCTT ATATTCATATGTTTTCCAGATTAAAGCCATGGAGAGAAGGGGCATTGGAC TTTACAGTGATACACTTGCTGCTCTCTCAGTAGGGCATAGCAATAGTTCA CAGTTGGATTTGGCTGAGGAACTTTTGGAAAGAATTTCAGAGATAAAACC AAAGCATCTACGTGCCTTTAATGCTTTGCTTTCTGGATGTGCGATTATGG TAATGCATTGAATCTGGAAATAGATTTTATGATATTGGGTTTGTGTCCCT TGCGCTGAATCTGCAAATGCTTGATGCTCTACATAACGTCCACATCCACA GAAAGTAGTTTCCTATAGCTGTCACTGCACCAACCTGCCAAATTAAAGTT TCTGTTTCATTAATAAGAAGAATGAACTAAACCTCTCCTCCCCTTCCCCC CTTTTCTTGGCAGAATGAACCAGAAAGAGCTGTGCGCATACTAGCTAAAA TGAAACATGTGAACATGAAGCCAACTCTCAGGACATATGAACTTTTGTTT TCTCTGTTTGGAAATGTAAATGTTCCTTATGAAGAAGGAAATGTGCTCTC TCATGTTGATGTTTCCAAAAGGATAAGTATCATTGAGATGGACATGTTTA ACAATGGAATCCAACACAGCTTTGTGTCTATGAAGAACTTGGTAAGTCTT CTTTCTATGTACTGTAGAGATCTAAGATATTTGGCAATAGTATGTATCCA GTTAGGAACCAATTCCATTTGTTGGCCTTTTCACATTGTCCACATCATGC TTTAACTTGTCCGAATAGGAAAATAGCTGATTTATACTTGTCTTAATCTT CTCTGTTTCTATCTAAAATTCCCTGTGAACTGTGACAGTTATTACTTAAA GGTAATAAGTCCACTACTATTTCCAGTGGTCAATTTAGTATATTTTTATG GTAATCGGAAGCACCACCTGAAGAGGACATATCATTGTTGTTTTGTGAAA AGTCTGAATATTTTCTCGCCAGCTAGTTCCCACTGGATGTCATAACCCAA AATCTTGCCAGTTAGTTCTCACAGACAGTTTACTGATTGAATTATCATCA TGCCATCTATAAAAATTTCTGGTATTGTGGTTTAACTTGCCAGTCACATC CCTCAGTGCTTCTTATGCTGAAAAATCCTTTTAATGTTCTATTTATTCTG TTTCAGATACGAGCTTTTGGATCTGAGGGGATGATAGAGGAAATGCTGAG GTACCTGAATATAGCAGAAAATATTTTGTGGAACATAAATCCTTATCAGA AGAGTGATCTATACAGCATTGCGTTGCATGCTCTGGTTGATGCGAAGGAA GTACGTATCAACAACCTTTTAAGTTTGTTCCGATGTGACAAAATGAGGAT TATTTTATCTCTTCTCTTTGTAAGGCATGTAAATCTAGTTGTAACAGCTA TTTTAGCTCATTTAATCTCGCTGAATTTGATGGGGAGATCCCAAGTGCAG TCACCAGTTATGTTGTAGTTATGGTGTTATGCAACCACCAAAGAAATTTT AGTTACAGTGTTAAGCAATCACCGCTAAATTGGGCGTGGAATCAATAATA AAAAAATTTCTAAATAATTAAAGATTCATTCACTTTACTTGCTTACTTGC AAAATTCATGTTCAGATTGTTTCTGTGTTACGGATTATATAGCATACAGT TCTTTTCTTTTGTTCTATCTAAAGCTATAGTACATTTGGAGTTTTTAGTT GAAATTTGAAAGTACTCCCTCCGTTCCAAATTGTAAGTCGTTCTTGTCCT AAGTTAAACTTCTCTAGCTTTGACTAAGTTTATAGAAAAATGCATAAACA TCTGCAACATCAAACTAGATTCATTAGATACACCATGGTAGTTTGATATC GCAGATGTTAATGTACTTTTCTATAAACTTAGTCAAAGTTAGACAAGTTT GACTTAGGGCAAAGCTGAAACAACTTACAATTTGCAGTGGAGGAATTATG CTACAACACTCCATAGACTGTATATTGTCAAAGTTTTCGAATGGGAACTG GTTCATGTTGGTTTGGTACTTTGGTGCCAAACTGAAATTTCATTGCATGA CTGCATTTTGCAGATATTGAACTTGTGTTATAAATCTTGATCCATGTTTC TTTTCTGGTATGCAGACTCACAGAGCAGTAATGGTCTTCAAAATCATGAG ATCATGCAGCCTTCCAACTAATATTTCAATTTATAATACCATGATAGAGT GCTGCAAATGGCTGCAATGTTTCAAATCAGCTAGTGCTTTGCTGTCTTTG ATGCTCCAAGATGGCTTCAATCCTACGGTTGTGACTCTTACATCACTCCT GAAGGTAAGTCTGGCTAAGAATAATACATATGTCTTTTAGATCTATCATA TTACCGATTACATATTAGTTGGGTTGACTTTTAGTGGTCCGATTGATCTC ATGTCTTTTTCATGATGTAAGATAGGTTGTATTAGCAAATAATAATTTTG AAGGGGCTCTGGATCTGCTTGATATATGCAAGATTGAAGGACTTCAGCCT GACATACATATTTTCAACACAGTACTCTCACGTGCATATGCTAGAGTATG TTTATGA
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Coding sequence (CDS) from alignment at Sh_001B06:26869..32375-

>Sh_001B06_t000050 ID=Sh_001B06_t000050|Name=Sh_001B06_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=1017bp|location=Sequence derived from alignment at Sh_001B06:26869..32375- (R570 Sugarcane cultivar)
ATGCAAAAAATTGGATTGCAACCATCAAATTTTACATATGACGGCTTTGT
TAAGACTGTGATAGCTGGGAAAGGAATTGCATATGCCAACAAAGTGATTA
AAGCCATGGAGAGAAGGGGCATTGGACTTTACAGTGATACACTTGCTGCT
CTCTCAGTAGGGCATAGCAATAGTTCACAGTTGGATTTGGCTGAGGAACT
TTTGGAAAGAATTTCAGAGATAAAACCAAAGCATCTACGTGCCTTTAATG
CTTTGCTTTCTGGATGTGCGATTATGAATGAACCAGAAAGAGCTGTGCGC
ATACTAGCTAAAATGAAACATGTGAACATGAAGCCAACTCTCAGGACATA
TGAACTTTTGTTTTCTCTGTTTGGAAATGTAAATGTTCCTTATGAAGAAG
GAAATGTGCTCTCTCATGTTGATGTTTCCAAAAGGATAAGTATCATTGAG
ATGGACATGTTTAACAATGGAATCCAACACAGCTTTGTGTCTATGAAGAA
CTTGGTAAGTCTTCTTTCTATGTACTGTAGAGATCTAAGATATTTGGCAA
TAATACGAGCTTTTGGATCTGAGGGGATGATAGAGGAAATGCTGAGGTAC
CTGAATATAGCAGAAAATATTTTGTGGAACATAAATCCTTATCAGAAGAG
TGATCTATACAGCATTGCGTTGCATGCTCTGGTTGATGCGAAGGAAACTC
ACAGAGCAGTAATGGTCTTCAAAATCATGAGATCATGCAGCCTTCCAACT
AATATTTCAATTTATAATACCATGATAGAGTGCTGCAAATGGCTGCAATG
TTTCAAATCAGCTAGTGCTTTGCTGTCTTTGATGCTCCAAGATGGCTTCA
ATCCTACGGTTGTGACTCTTACATCACTCCTGAAGGTTGTATTAGCAAAT
AATAATTTTGAAGGGGCTCTGGATCTGCTTGATATATGCAAGATTGAAGG
ACTTCAGCCTGACATACATATTTTCAACACAGTACTCTCACGTGCATATG
CTAGAGTATGTTTATGA
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