Sh_001B06_t000090

Overview
NameSh_001B06_t000090
Unique NameSh_001B06_t000090
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_001B06contigSh_001B06:85076..89321
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_001B06_g000090Sh_001B06_g000090R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_001B06_p000090Sh_001B06_p000090R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_001B06_t000090 ID=Sh_001B06_t000090|Name=Sh_001B06_t000090|organism=R570 Sugarcane cultivar|type=mRNA|length=582bp
ATGGCTTCCTCCCCGTGGCCGCGCACCGCCGGTGCCGCCCCCGTCCCGCC
GCCAGAAGCAGCAGCAGCTGCTGCTACTGCCGCCGCCACCCCCGCCCCGA
CGTCGGAGCAGCACCGGGTTAAGGAGGAAGGAAACGCTGCCGCCGCGGCT
GTACCGAAGCAGGAGGAGGAGGAGGCCAAGCCCCACTTGCCGCCGGACGA
TGACTCAGAAGCAGTAATCCAAGAGCATGAACAGAAGATCAATAGATATC
AAGCAATCCTTGCAGCCCGTCTGAAGGCCAAGTTTTTCTCTAAAAAGGCT
TTTGACAGAGGGAACATCTTTGAATCAGAAACCATTGTTGGAGGTGAAAC
AATCCGGTCAAGCAGGTGGCCATGTACAAGATCGTTTGCAAACCCAGAAT
TTTTTTCCCGCGACAAGAACAGCCATGAGAAGGGAAATTCTCCATCTTCA
GCAGCAGATTCCTCTGCCAAGAACAACTCTCCACCCTTGGCTGGTGAAGC
CTCACCAAAAAATAATGCTAGTGCTTTGGTCACAGAAAACAATCTAACAC
CTGGAAAGAGACAGCAATCCAAGAAGAATTGA
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protein sequence of Sh_001B06_p000090

>Sh_001B06_p000090 ID=Sh_001B06_p000090|Name=Sh_001B06_p000090|organism=R570 Sugarcane cultivar|type=polypeptide|length=194bp
MASSPWPRTAGAAPVPPPEAAAAAATAAATPAPTSEQHRVKEEGNAAAAA
VPKQEEEEAKPHLPPDDDSEAVIQEHEQKINRYQAILAARLKAKFFSKKA
FDRGNIFESETIVGGETIRSSRWPCTRSFANPEFFSRDKNSHEKGNSPSS
AADSSAKNNSPPLAGEASPKNNASALVTENNLTPGKRQQSKKN*
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mRNA from alignment at Sh_001B06:85076..89321+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_001B06_t000090 ID=Sh_001B06_t000090|Name=Sh_001B06_t000090|organism=R570 Sugarcane cultivar|type=mRNA|length=4246bp|location=Sequence derived from alignment at Sh_001B06:85076..89321+ (R570 Sugarcane cultivar)
ATGGCTTCCTCCCCGTGGCCGCGCACCGCCGGTGCCGCCCCCGTCCCGCC GCCAGAAGCAGCAGCAGCTGCTGCTACTGCCGCCGCCACCCCCGCCCCGA CGTCGGAGCAGCACCGGGTTAAGGTCCCCCCACAACCCCGTTTTTTATTC TCTCCCACGGTCGATGGCTCGTTTTCTCTGGCTCTTCAGGTCCAAGCTGA GCTCCTGACTGGTGCGTGCAGGAGGAAGGAAACGCTGCCGCCGCGGCTGT ACCGAAGCAGGAGGAGGAGGAGGCCAAGCCCCACTTGCCGCCGGACGATG ACTCGTAATTGCGATCCCCCTTGCCATGCGTCGCTTCTCTGTTACCGCAA TGCATGCTCTGTCCTTGCGTGATTCTCGATAGAAACGCTGCTTCACTTAC GGTTATATTGTTTTATGCGTGCACCCGTAGGACTATATGGGATCCGCGAA CACGCTGTTGTATACTTGTATAGCCGACGGAGGTAGATGTCTGATACTAG TGCATGGATGAGATGGGGCTGTTACCCTAATACTGGTTGGCCCGTAGCCC CGTAACAATGGATAGTATATTAATGTTATTATATACTCATATACGGATAT ACCAATAACAGGAGTACCTCATCAGTCACCACTTTTGTAGTTTTACCATG TGCACAAGGAGTGGTGGAGCCAGAACCAAAGCCCTGTCAGCTCAACAGCA CTGATATTCTGGACTTAATATATTTGTTTGTAAGCAAATTTTAGCAAAAG AGGTGCTACTTTGCAAAAACCTGTGGGGTCGATGTGGTTCCACTATGGAG CACATGCGAGTGCCTCTTCATCTTTGACGCGGTGTTAGGCATGCGAAGGG AACATGATTAGGCTATATGTTGTTGATAATCATGTAAAAATAGTGGCAAA AAGGAATCAAGTTAGTATATATTTTTTTTCAGAAAGTGCGTCAAGGTATA CCATTTGCACATCTTATTTCTCCTAATTTTCTGGTTCCAGCATATTAGTT CTCTCTGGAAGAAGAAGAAAAAGGATGACATCTGTTCTCTACTTAGTGAA AAACACACATAGGTTTCGTCCCTATACATTGATTCTTTGCATCTGTAATG TCACATCTTCTATCTTGTAGAGTTTTGGTCTCTCTATCAACAATGTATCC AAATCCCACGATTGACAAGCTGATCTGGACAATTTTGACTTTGTAGTAAG TTACACATTGAATTGTTTGACTAATTACCTTTTGGTTCAGAATATCAAAC CTTAGGTTATTTTTCTTTACACATTAAATACACTTATATTTTGAAGAACC TATTTGGTCCTTGAATTATATAACTTAAATTTGCAATTGGAGGGAGTAAA AAATTATAACATCTTAATCCTGTTAGGCCTATGATTGGCAGAGCAGAGGT ATTCCTTTGCTTTGGACCTAGATTCTGCATGTCGTCACTTTGAGAAGCCA TCAAGGTTGACAGTAATTTGTGCGCGTTGTGTTTAACATGTGTAGAGAAG CAGTAATCCAAGAGCATGAACAGAAGATCAATAGATATCAAGCAATCCTT GCAGCCCGTCTGAAGGCCAAGTTTTTCTCTAAAAAGGCTTTTGACAGAGG TACTCATGCACTCTTCAACCTCTTGAACTTTCTAGAGTCACCTAATTTCT AGTGTATGCCATTTTTCTCTTTGTTCTATCGCAGACAATCTGATCATTTT GTCTGGCTGTAGCAGCTCTGCCGTTGAGTGAAAATGTGTTATACTTTTCT CTAATATATTTTGAGTACATTATCAGCGAAAGTTAGGGTGGCACCGTTCA TATTGTTTTTGACGGAATTCATGACTCAAGCTCTCTCACATATCAGTCAG AATATGTTAGTCTAGGACATAACTCTGTTACAAATGAGTACTCCTTAAAC CTAATAATCATAGTTCTAATTTAATAGCGGTAATTATGTAAGTCTAGGGT CTGTTTGAGCTTACCTGAATTAGAATGTCAGTCAATTTAAGATCATCACA ACTCTTTTCAGATGCTAAACTGGAAAATGGGCTTTTCCCTTTTCAGTGTC AGCTCAAGCTAGCCTTAGATTTGTTATTTGGCTGCCTGATAATAAAGAAC TAATAACTTGCTAATGCATCTTCCTCTGCTAGTCAGACAGGTATTAACAA CTTAAGTGTCTGTTATATCTGATGTGTATGCTTAGAGCCAATTGCCACTT CATATAGAAAAGTTACATCAAACAGGACCATGCAAATTATTTGTTAGTCA GCATTGATTAGCATGATATATGGCTATCTTTTCTGTGTGAACCTTTTGTG TTGATAAGTCATTTGATCAACATCTCTAAGCACTACAAATCTATGTTTAT GGCCTTATGGGGGCTACTATTAGAAACTATGAACAATATGCATATATTTA TGTTAACAGTTATCTAATGAGCTGCTATTTTCTTTTCTGAATTTCAATTT ACTTTGCTGTCTTCCACTAGTGGACTCCTAGAGAAATGGGATTTTCTGAG AAAGGGAAATGACGGTGAAAATGATTTTACTGGATGGATGTCACTAGGAT GATTCTGCTAAATTTGCAGATGGTCCTTTTACATGTCAATGCTGGTCCAA ATAGTCTAGAAGCCTCTGTAAATAACTGAAAACTGTGTATATTTCAACTG TGATGTATTGTTAAATTTCTCTGTTGTGGTTGGTCACCAAGTAGTGGTAT CAGCCAGACAGGGTTCAAATCCTGGCTTGCACCCAAAAAAACTTGCTCTG CCTCCCCACAAAAAATAGCTGGGCACCAGCCTGCTGTAGTGGTGAGGTCC TACCTGGAGTAGTGGCAGGGTTCGGGGTTTTCTTGGCCGGTTTGGCTGGG GTTTCTTCTCATAGCAAAGCCGTGGGGGCAGTCCGGTTGAGTTTTTTTTT AAAAAAATAAAAGTATCTCTGTTTATGAGGATTTATTTGTTACAGTTTCC TTAATGGATGATTATTCTTCTTGTTTCACATGTGTTTTCTAGTCAACATT CCCTGCATCTTGATGCAAAGTTTCATTTTGATTGATTAGAAGTTTAAAAA AAGTACTAGCTCTCTTTTCTTAGACCTTATATAAATTTTCTGCTATTTGT CCTGTTAATAGGGAACATCTTTGAATCAGAAACCATTGTTGGAGGTGAAA CAATCCGGTCAAGCAGGTATATTTCCTGTGAGCTATCACTCTATCCCATC TCAGATTTCAGTATAGCAACATCTAAATGTCTTTTTTCCCTATAGGTGGC CATGTACAAGATCGTTTGCAAACCCAGAATTTTTTTCCCGCGACAAGAAC AGCCATGAGAAGGGAAATTCTCCATCTTCAGCAGCAGATTCCTCTGCCAA GAACAACTCTCCACCCTTGGCTGGTGAAGCCTCACCAAAAAATAATGCTA GTGCTTTGGTCACAGAAAACAATCTAACACCTGGAAAGAGACAGCAATCC AAGAAGAATTGACCTGATGGATTAATGTAGGATAATCAGGTTATGTTGTG TTCCTCTGTAGCCTGAGGCTAGCAACCTGAAGTATACACCTAGCAGGAAA GGCAAATTGACGCCAAAAATGTTTGTAACCTGCTCTAAATTCAGTTTGTT GTACCTGTTTTAGAAAGCATCTGTAGCGAGGAATACTGTTGTTTACTTGG TATTTAAATTGATGTATTATAGACTATCCCTATTGAACCATTGATTGGTT GCTCAAATCTGAATCCCAAATTTTCTTTATTACTCTGAATTTCATTATTC GATTTAATTTCTTTTTATGTCGGTGATACACTTGTGGATGAAAATACGAA GCTAACTTTTTTCACATGGCAATTTATAACTCCAGAGAGCATGCTGATAG TCTGCTATTGACACTTTATGGTAATTCTTTCGATTATCATTTTTTTCTCA TCTCATTATTGTCCATATTCTTATATCTTTCTTTTAAAGCTCCATGGACA GAACCCGAAGTATTCAAGGTTCAGAGTTGACAGCATCATAGCAGGTACAC ACATTCTCATATATAGGTAAATGCATTTATACACACACACACACACACAC ACACACACACACTTGCAAATGGACTTACAATGCTATCGAGAGCTGAATGT TTGGAAATGCTTGTGCAGTAATTTATGGGAGGGTAAAATGTTCTTATCTA CGGAATCATATTACTGAACTGTAAGCTGTTTCTATCTGAATGTTGGCTGT CTATAGTACTTTCCGGTTCTTGTCCCATTGTATGGAAAGTTGCATC
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Coding sequence (CDS) from alignment at Sh_001B06:85076..89321+

>Sh_001B06_t000090 ID=Sh_001B06_t000090|Name=Sh_001B06_t000090|organism=R570 Sugarcane cultivar|type=CDS|length=582bp|location=Sequence derived from alignment at Sh_001B06:85076..89321+ (R570 Sugarcane cultivar)
ATGGCTTCCTCCCCGTGGCCGCGCACCGCCGGTGCCGCCCCCGTCCCGCC
GCCAGAAGCAGCAGCAGCTGCTGCTACTGCCGCCGCCACCCCCGCCCCGA
CGTCGGAGCAGCACCGGGTTAAGGAGGAAGGAAACGCTGCCGCCGCGGCT
GTACCGAAGCAGGAGGAGGAGGAGGCCAAGCCCCACTTGCCGCCGGACGA
TGACTCAGAAGCAGTAATCCAAGAGCATGAACAGAAGATCAATAGATATC
AAGCAATCCTTGCAGCCCGTCTGAAGGCCAAGTTTTTCTCTAAAAAGGCT
TTTGACAGAGGGAACATCTTTGAATCAGAAACCATTGTTGGAGGTGAAAC
AATCCGGTCAAGCAGGTGGCCATGTACAAGATCGTTTGCAAACCCAGAAT
TTTTTTCCCGCGACAAGAACAGCCATGAGAAGGGAAATTCTCCATCTTCA
GCAGCAGATTCCTCTGCCAAGAACAACTCTCCACCCTTGGCTGGTGAAGC
CTCACCAAAAAATAATGCTAGTGCTTTGGTCACAGAAAACAATCTAACAC
CTGGAAAGAGACAGCAATCCAAGAAGAATTGA
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