Sh_001C11_t000040

Overview
NameSh_001C11_t000040
Unique NameSh_001C11_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_001C11contigSh_001C11:50168..55328
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDoubtful hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_001C11_g000040Sh_001C11_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_001C11_p000040Sh_001C11_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_001C11_t000040 ID=Sh_001C11_t000040|Name=Sh_001C11_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=450bp
ATGCGGCCGTGTTGGGTCAAAAGGGGCAGAGGGCCTATTCGTGCTCAGTA
CAGTAACTTTTCTCCTTTGCTTTTCTGCTCTGTGTGCCGTTGCTGCTTTT
GTATATCTAAAAACATTATCCCACTGCGTCATTTCATTTTTTTGTTCTCG
GTGTTGTTAGACGGTGGGCGTGGCCTCGCCGCCGGCGGCGGCCGCCGCGT
GCAGCCGGCTGTCGTAGGTGCCCGGTCCTCCCTGCTCCGCTCGCCTCGAC
GGACTGCTCTCGCGCTCTCCCTCCCCGCGCCGCAGTTGTGTCTCTGTCGC
TGCCGCGGTCACCCTGGCTCGCCGCCCTTCGTCCGCCCGCAGGGCAACCT
AGGAGGCATCTCCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAG
GCTTGGTGCTGGAGACGCCTTCATTTTCCTCAGGCTCCATGCTTGTTTGA
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protein sequence of Sh_001C11_p000040

>Sh_001C11_p000040 ID=Sh_001C11_p000040|Name=Sh_001C11_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=150bp
MRPCWVKRGRGPIRAQYSNFSPLLFCSVCRCCFCISKNIIPLRHFIFLFS
VLLDGGRGLAAGGGRRVQPAVVGARSSLLRSPRRTALALSLPAPQLCLCR
CRGHPGSPPFVRPQGNLGGISFRVVGVFLLAPKGLVLETPSFSSGSMLV*
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mRNA from alignment at Sh_001C11:50168..55328+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_001C11_t000040 ID=Sh_001C11_t000040|Name=Sh_001C11_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=5161bp|location=Sequence derived from alignment at Sh_001C11:50168..55328+ (R570 Sugarcane cultivar)
ATGCGGCCGTGTTGGGTCAAAAGGGGCAGAGGGCCTGTACGTGTATCGGA TTTGCGATGATGGCGTAAACATTTGTTGGTTCTTTTCTTACGAGTTCTTC CTCTTAAAAAAAGGGATTTCTAAATATCTTCTAGCAGTTTTTTGTTTGTG TTATCTTTCACTTTGGTATGGTGGTGATGTTTGTTTAGATTCGTGCTCAG TACAGTAACTTTTCTCCTTTGCTTTTCTGCTCTGTGTGCCGTTGCTGCTT TTGTATATCTAAAAACATTATCCCACTGCGTCATTTCATTTTTTTGTTCT CGGTGTTGTTAGACGGTGGGCGTGGCCTCGCCGCCGGCGGCGGCCGCCGC GTGCAGCCGGCTGTCGTAGGTGCCCGGTCCTCCCTGCTCCGCTCGCCTCG ACGGACTGCTCTCGCGCTCTCCCTCCCCGCGCCGCAGTTGTGTCTCTGTC GCTGCCGCGGTCACCCTGGCTCGCCGCCCTTCGTCCGCCCGCAGGTGAGT TTTCTTCTCTCCCTCCCTCCTCCTCTATCGCATCTGTCTCCCCCAAACGG CGGTGGGCGTGGTGGGCGTCGATTGCGCGGCGAGTAGGCGTCGCTGCGAG CGCGTCGTGGAGCAGTGGCGCGGCTGTGGGCGCGAGCAGCGAGGCGATGT GGTGGAGCGAGGTGGTCTGCGCGTGCGCCCCGGCGGCGCGCGGAGGCGAC GGCGGCGTCGAGGGCCGTGACGGCGGCCGGGGCGAGTCACTGCCGCACGG CGGGCGACTGGCGTCAGCATGGGCGGGGATTGGATTGGAATTAGATTTGA CTGGGCTTGGGGGCCAAGTGTAAAAATGAGAGTAGTAGTTTATTGCTCGA GGTTCAGTGTTTCAGTATACCTTGATTCGTTTGTTGCTGATGTTGATGGT TGCTATCCGTGCTGATAATCTGTCTTCTTCAGGGCAACCTAGGAGGCATC TCCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAGGCTTGGTGCT GGAGACGCCTTCATTTTCCTCAGGTCTGTTGTGTTTCCTGCCTACCCAGC ATGAAAGCAATTTCTGATCTGTGGTTTAGTTATAGTATTCTTTTTTCATT TATTTTGTTTTGTTCAAGTTCAGGTTAATTTTAGTGTTGCCTATTTTCAT TTGAAGATCAGTTGAAGTGCAGTAGAATTTATTTTCAGTCTTACTTTAAG TTCAGTCCAATTTCAGATTTCAGTTAGTCTATCAAACAAATATTTAGTTT TGCCATCAAACAAATCTTTGTTTGACCATTAGATGATTTGCAGTTTGGCC ATTCAGTTATATGTAGCAGGCCTTCAGTGTTCATTGTTTCAGATTCAGTT TTCCTTCAATGTTCATCGTTTCAGATATTATGTACTGTATTTTTTTTATG ATTTTTCAGTTTAAATGTTCATATAGTTTATGTTTTTTCAGTTTAAATGT TCCTATTAGTCTCTTTTTGGCGGCACTAGTTCCAGTGTTGTGCATGTAGG CTCCATGCTTTTGTGCAGGGCTGCATAAAATGCATGTATCTTGACTTTTA ATTTCTGAAAAACTTTTGTTCCGTACATAAATACATATATACAGCCCATG CTTGTTTTATTATTATGGTTTTTGATTTGACTGGTTGAAGCGCTGAGAAT TTGTAGTGCATTGCATGTAGGCTCCATGCTTGTTTGACGCGTCGATGGCA GGTTGGCAAGCAGCAATCCAGCGCTCTGTGTTGTTGTTTGGGCGGCACAG CTGCTCATCTTCATTCGTTTTCATTCTTGTTCGGCTTTGGATGCGGGCTT TGTTTGGGGTCTTGCGGTGGATTTGGTCGTTTTCGGCGATTGGTTTGTGG ACTTGCTCAGTGATTGTGGTTTGGCGGCGCAACTGTTGATTTAATTTTGT CGGTAGTCAGGTTTGGCTCCGGAAGAGTTTTTGCCGCGAGTTTTTCTTCT TTGTTTTAGATTTCAGTACTGTAGTTTTTCAATTTTCAGTTTTGAGAGAT GCTGGTGCTGGTTCTCCGGGAGTCCTGTTCCGCACTCATCGGCAGGACGC TGCTCCTGGTTCTCCGAGAAACTCTGTTGCCTCGCCCTCGGCGAGATCTG TCCTGTGCTTGTCTTATGACCATCCAGAGCCCAAACATTGGCCTGTTGTG CGTCTGTGCTTCTACAGGGATTCATAGTTGTGTTGATTATGGATGGCAGA ATAGGGAAAATGAGATTGGGATGAGAATTACGATGATTTTTGTTTGGGAG ATTCAGATTGTTTTTATTTGTGGTTTCAGTGCCCTTTTTGAGTGTCTTGT TCAGTTTCAGGCGTTATTTTATGCTGATTGGTCGGTTCAGTTTCATTATG TCATCTTAATTTTATATTTATTAAAAGTTTTTTATTTTCTTTGAATGTAT AAGTTTCTCTCAATCTAATTTCAGTCTTAGTAATATATGTAGAGTGTATC TTTAGATTGCAGTTTACTTTCAGTCTCTAATGGAGAGAAAAAAAAAAGAG TCTGATTAAGTGTTGCAACTTTCAGATTGTAGAAAGTATTTGATATTTTG TTGTGATGGTATGTGTTTTATCTAAGTAGGCTGATCCCATCTCTGTTTTT TCAATTCAGGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATTT TCATCAGTCCAGATATTTCCAAACTCATTCTCTGGATTCTCAAGTGGCCA GCCTTCATTTAGTCCTTTGACTCGTCAGGTTAGTCATTGATGGAAATATG GAATTACCCTTTTCGTTGTTGATGACTTTTAGTCCGTTTTGTGCTCTTTG TTTCCATGTTTCACTGAATGAGCACTAGTCTGAGTACATCTATTTGTCAT TATCTTTAGTACTTTGGTTTCCCACTCTGTCCAACAATTAGGCCTAGAGA TTTGGTGACTAGTTTGCAACTGTCCCTCCCCTTCTTTTGTTTTCAGTGTG TGGCTTCTACTGCACCGGTTAATTCAGTGTTGGAGTCGCTTGTTCTTCTT GTTGCGACAATGTTCTTTTCAGAGGCTAGCTTGGATTTCTAGGCGTAGAT TCCAGTTCAATCGATGGAGTTTGGTTGTAGTCAAGCAAGAAACCTAGAAC AGTATAAGTGGTACTTGATTGCATTTCATTTTACTGAAGCAAAGCGATAG GTTGATCAACCTGGTGGATCTACAGCTCCCAACTAGATAGAGAAAAATCA AGGATTTGTGAAGATAAATTTCTTGTTGTTTTTTGTACTTACATAGTTGC CAAGGAATGATTTTGCTACCTAAATTGTTTTTCTGTCAACAGACCTTTTG TTTTTTTACAAATTTGATGCCCTTTATTCTAGTTGTACCGTAGCTTTTTA GATAAACTGCAGCTGCATTTATCTAAAAATATGTTTGTTTTCCTTTTCTT AAAGCCCCACGGTCTGTCGTATGTTGATCTGTCAGATTTAGGTAGATTTG CTGCATTTGTATATTTGATTGAATCAATTTCAACTATTTTCGTAGTTTTC AGTATTTGGTCATTTCTTGCTAGATCATGGTTAAAGCTGATTGCCTGCGT CTGAACATCTTGTCCCCATTACAATGTGCATTCAGCACTGTTCAGATTTT AAATCATGTTCCTGTAGGTTCAACTCCTAGGGAGTCATAGAGTTCTGGGT TCTTGAATCCTCGCACCCCTGCATTTGGAGCCCAGGGAGGAGTTTTTGGT CCTATTTGCCTCCCCATTTTGGTTTCAGTAGTCTAAACTTTAGGAGCTGA TCCTTAGAACTTGACCCAACAATCAACAATGGGTGTGTTCACTTCCCATA CCAACCCAAAATATTTCCTCTTCCACCCATCACATTGAATCTTTCGACGC ATGCATGGAACATTAAATGTAGGTAAAAAAGATAACTAATTGCATAGTTT GTCTGTAAATGTCGGGACAAATCTTTTGAGCCTAGTTAGTCCATGATTAA ACAAATTTTGCCAAATAACAACGAAAGGTGCTACAGTAACTTTTCACCTA CTTTTCGCGAAGTGAACACACCCAATGATATATGTATCTAGAATTTCTGT CTGTCGTATGTTGATCTGTCAGATTAAGATTTGCTTCATCTGTATATCTG AATCATTTTCAGCTATTTTTCGTAGGTTTCAGTATTTCTTGCTTGATCAT GGTTAAACTATGCTCACGTAGTTCAGAGGTGCAGCAGCAGTACATGCTTG ATCACTCTATTTTGATGCAAAATGCCAAGTTAGAGTACCAGAAATAATGA TGAGTTTAGAAGAGGTAAAGCGTAGGGGCAGAAGCTTGCCTTGCTGTTCG GCAGTAGCTTGTGATGCTGCACTAGAAGATTAGAGGAACGCAGGGCTAAA AGATAAGTGGCTGACAGTATGTTCAGAGATCATCTTGAAGAACAGAACTG GCCCTGTTGCACTAAGTTTCCGAAAAGAGAAGCAAGGTCCGCTGTAAAAG TGGTTGAGGAGCAGAGTTGTTCAGTCCTGATACTTGCAGTGCGTGGACTT GATTTAGTTCAGCCATACAGATCTTTTTAGTGCAAAGCAGGCAAACTGAG AACTTTAGTAAAGAGTGGAGGTATTTGTGCAGCCTGACGAAGTTCAGCAA CGATGATTTAAAAAAAAATACAAGACAAGGAGATGCCAAATGGAGGATAG ATGATCACAGGGCAGTGTATGACTTTTTTGTTTGAATGAGAAGCTTGCGG CAAGTAGCACCGGTTATACAGCCCTTGATATAAGCAAGCAGTACAGTTCG GCATCCACTACAGAGATGCAATGTAATATCGTTTGTGATGAGTAGAGCTA AGGCTGTAAACCACCGCCGGAAGCAGCAAGGCTTGGACATTGATAGTGTT CAGTCATGTAAACTTTCAGTATATGTGCCGCCACCCCCCCCCCCCCCCCC CCCCCCCCCCCCAAACCTTGCAGTAACTCTGCAGGTCTAATTTGTGATGC AGAGAGATCAGTAGAATAGCAGCTGCATGCGGCATCATTTTCTTAGTATT TATTATTTTATATCCAAGTATCAAGTTGTGCTTATTTGATTCATTTTCTG TTAAAGCCCCACGGTTAACTGAATCAAGCAAATGGTTTTCATGCAAGTCA ACTTCAGTTACTGACTGGACTGAATAACAATGAATACCAGATAACCAGGT CAAAGGTTATT
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Coding sequence (CDS) from alignment at Sh_001C11:50168..55328+

>Sh_001C11_t000040 ID=Sh_001C11_t000040|Name=Sh_001C11_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=450bp|location=Sequence derived from alignment at Sh_001C11:50168..55328+ (R570 Sugarcane cultivar)
ATGCGGCCGTGTTGGGTCAAAAGGGGCAGAGGGCCTATTCGTGCTCAGTA
CAGTAACTTTTCTCCTTTGCTTTTCTGCTCTGTGTGCCGTTGCTGCTTTT
GTATATCTAAAAACATTATCCCACTGCGTCATTTCATTTTTTTGTTCTCG
GTGTTGTTAGACGGTGGGCGTGGCCTCGCCGCCGGCGGCGGCCGCCGCGT
GCAGCCGGCTGTCGTAGGTGCCCGGTCCTCCCTGCTCCGCTCGCCTCGAC
GGACTGCTCTCGCGCTCTCCCTCCCCGCGCCGCAGTTGTGTCTCTGTCGC
TGCCGCGGTCACCCTGGCTCGCCGCCCTTCGTCCGCCCGCAGGGCAACCT
AGGAGGCATCTCCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAG
GCTTGGTGCTGGAGACGCCTTCATTTTCCTCAGGCTCCATGCTTGTTTGA
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