Sh_002I04_t000100

Overview
NameSh_002I04_t000100
Unique NameSh_002I04_t000100
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I04contigSh_002I04:109906..113993
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDoubtful hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I04_g000100Sh_002I04_g000100R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I04_p000100Sh_002I04_p000100R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I04_t000100 ID=Sh_002I04_t000100|Name=Sh_002I04_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=462bp
ATGTGCCCCTTGATCAACATCGTGTGGCCCAGATTAGAAGTTTTCAAATT
TGCACAGTTGGTCCGGTTTCCACCTGATACGTTGCCCTCTCTCGTGTACC
TTATCCTCTCCTTACTCTTCTCCCTCACCCGATCCACCCAGCCATCTCTC
ATCTCCACTCTCGGCGGACCTCTTCGCCCGGCCCGAAGCAGCGGTCGGCG
CCTGGTCCCCCGCCGCCGGCACCAAAGGACGGACGCGTCAAGGCGGAGGC
GGAGGCGGACGCCAACGGCAAGCATAGCTGGATTAGCTCTGTGCAGCTCT
GGAGCTGGGGCTCCGCCATGCCGGTCCCGGATCTGTCCCTCTCATCCCCG
GCAGCCAACGGCTGCAGCTGCTCCGAGCACCACCAGCAGCGCCGTTGCGG
ACGCCGCCGGGGCGTACCGCCACCACCAGCAGGTGCAGCAGAGGAAGGCC
GCCTCGCACTAG
back to top

protein sequence of Sh_002I04_p000100

>Sh_002I04_p000100 ID=Sh_002I04_p000100|Name=Sh_002I04_p000100|organism=R570 Sugarcane cultivar|type=polypeptide|length=154bp
MCPLINIVWPRLEVFKFAQLVRFPPDTLPSLVYLILSLLFSLTRSTQPSL
ISTLGGPLRPARSSGRRLVPRRRHQRTDASRRRRRRTPTASIAGLALCSS
GAGAPPCRSRICPSHPRQPTAAAAPSTTSSAVADAAGAYRHHQQVQQRKA
ASH*
back to top

mRNA from alignment at Sh_002I04:109906..113993+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I04_t000100 ID=Sh_002I04_t000100|Name=Sh_002I04_t000100|organism=R570 Sugarcane cultivar|type=mRNA|length=4088bp|location=Sequence derived from alignment at Sh_002I04:109906..113993+ (R570 Sugarcane cultivar)
ATGTGCCCCTTGATCAACATCGTGTGGCCCAGATTAGAAGTTTTCAAATT TGCACAGTTGGTCCGGTTTCCACCTGATACGTTGCCCTCTCTCGTGTACC TTATCCTCTCCTTACTCTTCTCCCTCACCCGATCCACCCAGCCATCTCTC ATCTCCACTCTCGGCGGACCTCTTCGCCCGGCCCGAAGCAGCGGTCGGCG CCTGGTCCCCCGCCGCCGGCACCAAAGGACGGACGCGTCAAGGCGGAGGC GGAGGCGGACGCCAACGGCAAGCATAGCTGGATTAGCTCTGTGCAGCTCT GGAGCTGGGGCTCCGCCATGCCGGTCCCGGATCTGTCCCTCTCATCCCCG GCAGCCAACGGCTGCAGCTGCTCCGAGCACCACCAGCAGCGCCGTTGCGG ACGCCGCCGGGGCGTACCGCCACCACCAGCAGGTGCAGCAGAGGAAGGCC ATGTCAGCTATATGGGCCGATGGAGGGCCATGGGCCGTAGCCGCACCGAG GCCTGCTCAGATCAATACAAGAGGAGGTGGTGAACCAAGAGGAAGTCATC GAAGAAATTATCCGAACCCTTTACTTTACCTTTACTTTACTGTTCATCTT CTTCTCTAAGTTGATTCCTCTTGTACCTAGATTTCCTATCTCTAGTTCCT TCTAGATCCTTCTAGACTTATCCTGCTACTTTCCTGATTCATCTCGATTT ACCAACTGCTACCTGGGTGTCTAGTTGCCGGTTGTTAACAATTGGTATCA GAGACAGTCGATTCTCGGTTCCTTCGTCATGAATCCTTCTGCTGAGATCT CTCCTTCTACCCAGCTCCTTCTCGATGAAATCCACAAGCTGTTCGCCGAG TTCAACAGGAAGCTCGACGAGAGCGAGGCTCGATGGGAGCGGCGCGACGC CGAGTCCCGAGCCGCACGGGTGCAGTGGGTCACCGCCGTCGAGCCCCACG CCGACGTTCCTGAGCAGATACCTGCTGAAGGGTTCGATGCCATGGTGGTC GCCGACAACTGGGGTGGGCTGTTCGAGCAGCCTGCCCACGAATCGAAGGA GCTCGACCCTGACCTCTCCGCCATCGACGTCTTCGGCTCGGCCCAGATCC GCGACGAGCACGGCCTCTCCTCCGACGTCCCCGTCGCGCTGCCCGACGTT GTCCACGAGGCCACCCCGATGCTCGACTCCGACGTCGCCTTCGTGACCCC GTGCATCTCCAACCTCACGGGCGAGGAGCCTGCCCGTGTCACGGAGGAGC GCGACTACGAGCCGGTCATCTCCGACTCTGCCTCGCCTCTGCCGATACAG GAGCAGCTCGCTGTTGACGCTATGGCGACCGAGTACACCTCCATCGACCT CGCTGCGCCCCCGAACCCGCTCCTCTGCGACCGCCTCAGTCTCCTTCCCA ATAACCTCCTCCGCGACATCGTCTCCCGTCTTCCCCTCAAGGAAGCCGCA CGCACAGCGGTGCTTTCTCGCCGCTGGAGGGCACTCTGTGCCGCCCCGTC CATGATGCTGGTCCCCATGTTCCCCAAGGGCGAGCTCTTCTGCCTCACCA CCTAGGAGGGGGATCTCACCGTCAAGCGCGAGAAGGTGCAGATCGAGGCG AAACCATTCTTCCTTGTGCTGATCAAGCAGGACGCCATTGGGTCCGCCCA CGCCCCTCCTGTTCGGTGCCGCGGTCGAGGCCCGCATCGACGACAACGGC CTCCACGGCTCCTGGTTCCCGGTCGCCGTCCTCGACTTCGAGCCCGCGCG ATGCTGCCGCAACCCGACGCGGTACACCACCCAGTCCGCGCACCTCCTCG CCGACGTCGAGGGCGTGCTCGCGGATCCAGTCGCTATGCTCTTCCCCAAC TTCGCCACGCGGTTCGTCTCCGCCACCGGCAGCGCCGCACAGTTTCACCG CCCGCGCCTGGCCTCGCGGTGCCCACCGAGGGGAAGGACATCAGCCGCCG CGTCGCCACACAAATTGTGTCCTTGAATTCAGATGGCCTCGCGACAGCGG AGCAGGCAGCATCGGCTTGGGCCAACATGGCCTCCCTCGATGTGGGTGAA GGCCGCTTGTAGGACGCACGCGACGCCATCGCGCTGGCTGTGCTATTCTT CATCGACGCACTACCGACGCCCGACATCAGTAAGGAGCATGCCAGCCCGG GTGCACGCCAGGTGTTCGAGGTATTGTCACTACATGCCGATATCTTCTGC AACATCTGTATTAACTGGGAGCTGCTGAGTCATTTGTCACTGGGAGTCAA TAATCACCAACCATGGCCACCACCTGATGAACTGAGGTTGACGAGTTGTG ATGCTGAGTTACGACCTACACCATGGCCGTCGTTCATCAGGGCTGAGTGG TTCTCTGTCAGGAGTTACTGTGGTCGACTTTGGAAGCCCCCATGGCCTAT ACATATTTGTCAACAAAACAGTTTATTACTGCCTCAGTTGAAGACACATG TGCCAGTCTTTGACCAGCTGAAGCGTGGTGGGCATTTTGTTTCCAACTGT CTGACTATTGGGTTCGGCATCAGTTTTTGGAGCAAACTAAGTGATACTGA CCTAGAGGCATGCCTTGGCCGAAAAGATCCAAATTATGACAGTGGCGAGG AGCCGTGTGAGTTAGTTGACGTCCCTGTTTCAACCCCACTAGAAGTCTAC AAGCAATCTGTTATCCTGTTATTTGAGGAATATTTCAGCAATGGTGATGT GAAATTAGATGCTTCTGATCTTAAAGAGTTGAGTTATGATGATTTCCACC AAAACTTTGTCAAGAAGCTTGTTTCCACAGCAATGGACAGGCATGACAAA GAGGAAGAGATGACATCAGTGCTTCTATCATATCTTTGTGGCAATGTGGT CAGTTCAACTCAAATCAAACGGGCCTTGGTGCTGCTATTAGAGGTTGTTG ATGACCTGGCTGTTGAAATACCTGATGTGGTAGATGTGCTCGCGCTTTTC ATTGCACGTGCAGTTGTGGATGACATTCTGCCACCTCCTTTCCTCAGCAA GGCAAAAGTGAGTATCTCAGGATCTTCAAAGGGTATGCAGGTTGTACAAA TTGCAGCGAACAATTATCTTTCAGCACCCCACCACGCAGAGTTCATTGAG CGACAGGGCAGTTCATCTCACATCACAGTAGAAGAGGTAAAGAAGAGGAT TGCTGATCTACTACAGAAATACATCAGAAATGGTGATGCAACTGAGGCTT GTAGGTGCATCAGAGAATGGGCAGTGCCCCTTTTTCATCATAAAGTGGTG AAGCGAGACCCTACTCTTGGTCTTTGTCTGATTGCCTTGCTTGAGGGGTC TGAGCTTGAGGATATTCGAGATGAACTCAACTGTCGTATGTCGTTGGGTG ATATTGCTGACCTGCGAGCAATAACATGGCCACCACCTCTGACACTTGTG ATCCAGGACGATAGAGTCTCACTCAGGCCAACACCTTGGCCATCTTTCCA TGTGGCCAGACATAGGTTTGGGGTCGTGACAAGCATCATCTTCCTCAAGC TTCCTCGGTGGTTATTTGATCCAGGACATGAGTTCAAGCTCGAGCGACAC TACAATTCCATGTGTGTTCCATTACAGCATGCATTCCTACTGGTACTGGA TAGTTGGCATCTTCACAGAACGGTCCACATACATGCTCCCATCCAAGCTA TGGGCTGGCGTTGTAACCTTCTGATTGAGGGACATATTCAAGTCCTCTCC GTCCATGAAATGTCTGCTGCTATGGTTGCTGTACAGTCGACGGATCTGAT GAACCTATCATCGTCTACAATATCAGCGGCTTGGGGGCAAGCTGCCTTTC AAGGAGAGGGGAATGTCAGCTATATGGGCCGATGGAGGGCCATGGGCCGT AGCCGCACCGAGGCCTGCTCAGATCAGTACAAGAGGAGGTGGTGAACCAA GAGGAAGTCATCGAAGAAATTATCAGAACCCTTTACTTTACCTTTACTTT ACTGTTCATCTTCTTCTCTAAGTTGATTCCTCTTGTACCTAGATTTCCTA TCTCTAGTTCCGTCTAGATCCTTCTGGACTTATCCTGCTACTTTCTAGTT GCCGGTTGTTAACAGGCCGCCTCGCACTAGTCCCGCTC
back to top

Coding sequence (CDS) from alignment at Sh_002I04:109906..113993+

>Sh_002I04_t000100 ID=Sh_002I04_t000100|Name=Sh_002I04_t000100|organism=R570 Sugarcane cultivar|type=CDS|length=462bp|location=Sequence derived from alignment at Sh_002I04:109906..113993+ (R570 Sugarcane cultivar)
ATGTGCCCCTTGATCAACATCGTGTGGCCCAGATTAGAAGTTTTCAAATT
TGCACAGTTGGTCCGGTTTCCACCTGATACGTTGCCCTCTCTCGTGTACC
TTATCCTCTCCTTACTCTTCTCCCTCACCCGATCCACCCAGCCATCTCTC
ATCTCCACTCTCGGCGGACCTCTTCGCCCGGCCCGAAGCAGCGGTCGGCG
CCTGGTCCCCCGCCGCCGGCACCAAAGGACGGACGCGTCAAGGCGGAGGC
GGAGGCGGACGCCAACGGCAAGCATAGCTGGATTAGCTCTGTGCAGCTCT
GGAGCTGGGGCTCCGCCATGCCGGTCCCGGATCTGTCCCTCTCATCCCCG
GCAGCCAACGGCTGCAGCTGCTCCGAGCACCACCAGCAGCGCCGTTGCGG
ACGCCGCCGGGGCGTACCGCCACCACCAGCAGGTGCAGCAGAGGAAGGCC
GCCTCGCACTAG
back to top