Overview
| Name | Sh_002I17_t000020 |
|---|---|
| Unique Name | Sh_002I17_t000020 |
| Type | mRNA |
| Organism | R570 Sugarcane cultivar (R570 (sugarcane cultivar)) |
| Sequence length | 2169 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|---|---|
| Sh_002I17 | contig | Sh_002I17:9194..13859 |
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|---|
| Structural and functional annotation of S. officinarum | 2017-07-25 |
Properties
| Property Name | Value |
|---|---|
| Note | Conserved hypothetical protein |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type |
|---|---|---|---|
| Sh_002I17_g000020 | Sh_002I17_g000020 | R570 Sugarcane cultivar | gene |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|---|---|---|
| Sh_002I17_p000020 | Sh_002I17_p000020 | R570 Sugarcane cultivar | polypeptide |
Sequences
The following sequences are available for this feature:
mRNA sequence
>Sh_002I17_t000020 ID=Sh_002I17_t000020|Name=Sh_002I17_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2169bpback to top
ATGAATGTGCCCACTTATACATCTTTTGCCATATTGCCAGCTGCTAGGAA
CTTGCTGACTAGGCACGTCAACTTCTTGATTGCCAATTTGCCATACAACA
CCAAGTTTTGGATAGATTTGAGCCTTTTGACATTTATATGCAAAGAAAGA
ATCAGGACTGCAAAGACCACAAGGAACAAGGTGGGGATTGATTGCACAAG
AGGTGTGAGTAGGGAGCAGAGAGCCATAAACAGAAGGAACAAACTTGAGT
CATCACTGGTTTCAAGTCGGACTTATGTCCCTAGTGGTAACAAGAGAGCC
TGGAACCGCAACATAAAATGGATGCTAGAACGTCGTGCGGCTAATGAGGC
GTATTATAATTTTGAGGAGAATCTATCTGCTATTGCAGTGCAACGATTCG
GTGAACCTTTTCCTGATAGAGAAGATCCAAATGTTGCTTTTGAGGAGAGG
TCATTTGGTGAAATAGTCAAACCTGGTCAATTAACTTATCCAATCAGTAC
TAGTTATGCTGTGGATTTGTCTTCCTTGGTCGTCTCGATTGCTTTGTTTG
ATGGAGATAAGATGTTATTTGCATGCTCGGGCATACCTATACCTCACGGA
AGAACTAGACAAAGCCTAACAAGATTTGTGACATCAGCACATTTGGTTAC
ACAATTCAACAAGAATAGAAATAAAGATGATAAGTTGAGGGTTGCAGTGC
GCCTTCCTAATAATACAGGTACCGATGGGTTCTTAGGACTATATGATAAA
GACATTGCTATCGTCACATGCTTGGGCTTCCTAGGAGTCCGTCCTATAGA
TCTGGATCATAAGGCAAAACCTTTCCCTGGTGATAGTTTGAAAGCTGCTG
GGCGTGCCTTCAACTCTGGCAGTTTGATGGCCATGCGTGGATCTCTGTAT
CAGAAACGCCCCCTCAAACACCTCGAACGCCTCAACACCTGGGTTTCTGA
TAGTCAAGATATCTCTAAGGCTGTACTTGGAGGGCCACTTCTGGGGTGGG
ATAATAAAATTGTCGGGATGAGCTTAGATATTTATGACCCTGGTGATGCA
AATTTGAGATACACCTTCCTACCAATGGACTTACTTTGCAAACGTTTGAA
GCATTTTCAGATACTCAATCCTGAAAAACTACACTTCCGTGGATATACGT
TGCCTAAAGATGTATCAAGTGTAGTTCCTTCAGGGTTTATGCAAACTATT
TGCAGGTTAAAGTCCTGTGACTATCCCATTCCACCACCGCTTGTGCTCGA
ATTCAATGGGCAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTAC
TTCCTTGGAAAGGGTATCCCTTTGGTCATACACCCGGTGGCTCTGGGGAG
CGCGTCTGGAATCAACTTCCAAAAGATGTTGTGACAGATGTATCCCGTCG
TGTTGTCTCACTTGCTTCATTCAATGGGTATGTGAGATCTTTTGCATGCA
CAGGCTTGCTTATAAAATGGCATGGAAGCAAAGCTAAGCACACTGTCATC
CTGACTTCAGCCAGTTTGGTTAGAGGTCGTTGTAATGAGGATAGCATTGA
TAATAGCTTGACGATTGAGGTGTTTCTCCCACCGAATCAACGTGCTGGTG
GGACATTGGAATTTTATAATTTAGACTATAACATTGCTATTGTCAGTCTC
AAGAAGAATTTCAGTGCTATTTGTCCGGACGACATCTTTGCTAAAAGTGC
ACAAAACACATCTAAAAAGGTTGTAGCTGTAGGGCGTGATGCTAAATTTG
GTATATTGATGGCCGCAAGTGGTGAAGTGAAGCGTGGAAACAAGGGTTGC
AAACTTGATTGCAAAGATGTTCAGCTGTCTACTTGTAAAATCAAGAAGGC
TGGGATTGGAGGCCCGCTTATTAATCTTGATGGGAGTTTTGTTGGCATGA
ACTTCTACGATGGAAGTGGTGTAACTCCTTTCTTACCAAGGCACAAGATT
GTTGAAGTTCTAAGTGGAGCGGATTCTTTGCCATCAGAATGTGGATATAA
CCATCCTGTGCCTGTCAATGTCATTGGTGGGACAAAGAAGCAGATTCAGA
AAAACAGACCTTTGGTGCTGTCGCTGTACTGTTTATCATACTTCGACTGT
TGTAACTTACAAGTCGGCTCGAGAGGCGATTACGTCACAAGCACTGTGCC
GTTGGTGCTAATCAGCTAG
protein sequence of Sh_002I17_p000020
>Sh_002I17_p000020 ID=Sh_002I17_p000020|Name=Sh_002I17_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=723bpback to top
MNVPTYTSFAILPAARNLLTRHVNFLIANLPYNTKFWIDLSLLTFICKER
IRTAKTTRNKVGIDCTRGVSREQRAINRRNKLESSLVSSRTYVPSGNKRA
WNRNIKWMLERRAANEAYYNFEENLSAIAVQRFGEPFPDREDPNVAFEER
SFGEIVKPGQLTYPISTSYAVDLSSLVVSIALFDGDKMLFACSGIPIPHG
RTRQSLTRFVTSAHLVTQFNKNRNKDDKLRVAVRLPNNTGTDGFLGLYDK
DIAIVTCLGFLGVRPIDLDHKAKPFPGDSLKAAGRAFNSGSLMAMRGSLY
QKRPLKHLERLNTWVSDSQDISKAVLGGPLLGWDNKIVGMSLDIYDPGDA
NLRYTFLPMDLLCKRLKHFQILNPEKLHFRGYTLPKDVSSVVPSGFMQTI
CRLKSCDYPIPPPLVLEFNGQLLNHFEECFGELLPWKGYPFGHTPGGSGE
RVWNQLPKDVVTDVSRRVVSLASFNGYVRSFACTGLLIKWHGSKAKHTVI
LTSASLVRGRCNEDSIDNSLTIEVFLPPNQRAGGTLEFYNLDYNIAIVSL
KKNFSAICPDDIFAKSAQNTSKKVVAVGRDAKFGILMAASGEVKRGNKGC
KLDCKDVQLSTCKIKKAGIGGPLINLDGSFVGMNFYDGSGVTPFLPRHKI
VEVLSGADSLPSECGYNHPVPVNVIGGTKKQIQKNRPLVLSLYCLSYFDC
CNLQVGSRGDYVTSTVPLVLIS*
mRNA from alignment at Sh_002I17:9194..13859-
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.>Sh_002I17_t000020 ID=Sh_002I17_t000020|Name=Sh_002I17_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=4666bp|location=Sequence derived from alignment at Sh_002I17:9194..13859- (R570 Sugarcane cultivar)back to top
ATGAATGTGCCCACTTATACATCTTTTGCCATATTGGTTTGGTTGCTTTC TGTTATGTTTGGATTTTTTTTTTGTTCTGTGCCTTTTTCTGTCAATCTTA GCCAGCTGCTAGGAACTTGCTGACTAGGCACGTCAACTTCTTGATTGCCA ATTTGCCATACAACACCAAGTTTTGGATAGATTTGAGCCTTTTGACATTT ATATGCAAAGAAAGAATCAGGTCAATCTAGTACTGATTTTGAGAACATGT TTATTCATACTGTTATTGTTGATAGTATTATCAATGAACCTAATATTTTA AGGTTGACAAGGTGCTTCATTGTTTTGATTTCGAGGGGGTGAGGGTGGGT TATAAGCTTACAAAAGGGTCTAAGTTACTCTACTAAGCATTTGCATTTAT TTTCTGCTTCAGGACTGCAAAGACCACAAGGAACAAGGTGGGGATTGATT GCACAAGAGGTGTGAGTAGGGAGCAGAGAGCCATAAACAGAAGGAACAAA CTTGAGTCATCACTGGTTTCAAGTCGGACTTATGTCCCTAGTGGTAACAA GAGAGCCTGGAACCGCAACATAAAATGGATGCTAGAACGTGAGTAGTTGA TTTGAATTTGCTGGTTCTTTCTTTTGTGGTGCATATTGCTCTAGCAAACC ACTCAGCTGTGGTGTATCATGTTTATTAATCAGGTCGTGCGGCTAATGAG GCGTATTATAATTTTGAGGAGAATCTATCTGCTATTGCAGTGCAACGATT CGGTGAACCTTTTCCTGATAGAGAAGATCCAAATGTTGCTTTTGAGGAGA GGTCATTTGGTGAAATAGTCAAACCTGGTCAATTAACTTATCCAATCAGT ACTAGTTATGCTGTGGATTTGTCTTCCTTGGTCGTCTCGATTGCTTTGTT TGATGGTGATTGTGCTACTATACTTTTCAATTTTCCTATAAATTGCATTT AGTCATCACTTGTTATTTAAATCATGATATTGTCCAGGAGATAAGATGTT ATTTGCATGCTCGGGCATACCTATACCTCACGGAAGAACTAGACAAAGCC TAACAAGATTTGTGACATCAGCACATTTGGTTACACAATTCAACAAGAAT AGAAATAAAGATGATAAGTTGAGGGTTAGTGCTGCTAATCACTGTGTTCC TTGATTTTTCTTTGTATATTCAAGCTAATTGTGAACATACTGAGCTTGTG CTTGTGCACTGCTTTTATTTCTGTAGGTTGCAGTGCGCCTTCCTAATAAT ACAGGTACCGATGGGTTCTTAGGACTATATGATAAAGACATTGCTATCGT CACATGCTTGGGCTTCCTAGGAGTCCGTCCTATAGATCTGGATCATAAGG CAAAACCTTTCCCTGGTGATAGTTTGAAAGCTGCTGGGCGTGCCTTCAAC TCTGGCAGTTTGATGGCCATGCGTGGATCTCTGTATCAGAAACGCCCCCT CAAACACCTCGAACGCCTCAACACCTGGGTTTCTGATAGTCAAGATATCT CTAAGGTATACTGTTGATTTATTTATTTGTAACTTTGTGGCATGATGGAA AACATGGAACACATAACTGCATTATGTTATTGCTGGTCTAAAGTATCATT GTGTGCATTGAAGTAAATCCTTTCTAAACCTACCACTTTGCTTTTGTTCT AGGCTGTACTTGGAGGGCCACTTCTGGGGTGGGATAATAAAATTGTCGGG ATGAGCTTAGATATTTATGACCCTGGTGATGCAAATTTGAGATACACCTT CCTACCAATGGACTTACTTTGCAAACGTTTGAAGCATTTTCAGATACTCA AGTATGTCTTCTACACTTACAATATTTATTGACTATTTCTTCAGTTAACC TGATTCATATTTGTTCCAAACCGTCTCTCCTAATCGACTTCCTGTTTAAG GTAAGCCATTTTTACTAACAGCATTGGAGACTTAGGAGTTTTCACATGGT AACCTTTGGATTGAAAATAATTTGGTTCTTCTTACCCCTCTCTACTGAAA CCAGTACCATTGCCAGATCTTATGATGCTAACTTAGTGCCCATGCTTAAT GTTTTGGTCTAAATTAGGAAGAATTAAACAATTCTTTGTGGCTATATGGA CAATGTAACTTATATTTGTGACATGAATATGCTCAATCCTCGCATCTTTT GTTGAATATTTATGCCTGATTCCAAGTCATTATTTCATACCTTTATTTCT TTCACAAGACAAGATTAGATTCATGTGTTGGTATGATTGGATTTTTTTTC CCTGTGTAGTTCCTATGTTTTATTTTGTCATAACGAGTCAACTATGTTTT ATTGCAGTCCTGAAAAACTACACTTCCGTGGATATACGTTGCCTAAAGAT GTATCAAGTGTAGTTCCTTCAGGTGTGAACAATACTACAAGCTATCTTCT AAAATGTTGCCTATGTATCATTGTGCACAGAATACAATGTTACCAGTATC ACACATATCATCTTGAGGACTAATAATGATCAAAATATTGCATCAGGGTT TATGCAAACTATTTGCAGGTTAAAGTCCTGTGACTATCCCATTCCACCAC CGCTTGTGCTCGAATGTAAGTGTTGCTTTTGATATTGCTGTCATCTCCCT TGTGCCTTTTTGCAGTTCACTTCTGATCTTCGTTCTTTAACTAGTCAATG GGCAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTACTTCCTTGG AAAGGGTATCCCTTTGGTCATACACCCGGTGGCTCTGGGGAGCGCGTCTG GAATCAACTTCCAAAAGATGTTGTGACAGATGTATCCCGTCGTGTTGTCT CACTTGCTTCATTCAATGGTGATTTTTCCAGCTGTGTGCTCCTTACTTTT TTGTGCTAGTATTTTATCTTCACTAACTAATGATTAAACTTATAATGTGT AGGGTATGTGAGATCTTTTGCATGCACAGGCTTGCTTATAAAATGGCATG GAAGCAAAGCTAAGCACACTGTCATCCTGACTTCAGCCAGTTTGGTTAGA GGTCGTTGTAATGAGGATAGCATTGATAATAGCTTGACGGTTGGTGCTCC TTAGTCCTTATCCTTACCTTTGGTCTTTTAAGTTTAATGATGGTTTGCTG AGCTCGCTTTCTCATTGCAGATTGAGGTGTTTCTCCCACCGAATCAACGT GCTGGTGGGACATTGGAATTTTATAATTTAGACTATAACATTGCTATTGT CAGTCTCAAGAAGAATTTCAGTGCTATTTGTCCGGACGACATCTTTGCTA AAAGTGCACAAAACACATCTAAAAAGGTTGTAGCTGTAGGGCGTGATGCT AAATTTGGTATATTGATGGCCGCAAGTGGTGAAGTGAAGCGTGGAAACAA GGGTTGCAAACTTGATTGCAAAGATGTTCAGCTGTCTACTTGTAAAATCA AGAAGGTACTGTGGTGAATCTCTCTTACTGTTCTTTTATATGATAACCAG TTTAATCATATTGCATGTACTAAACTCATTAGGAATTATTACAAGTTTCC CAGTAACCTTGGGCCTTTTTTTAAACTAGGCTGGGATTGGAGGCCCGCTT ATTAATCTTGATGGGAGTTTTGTTGGCATGAACTTCTACGATGGAAGTGG TGTAACTCCTTTCTTACCAAGGCACAAGATTGTTGAAGTTCTAAGTGGAG CGGATTCTTTGCCATCAGAATGGTATTATAATTTCATCTCGATGCTAACT GGTAGGCATGACACTTATTTTACAAACTTTGATTTTTTTTTTGTTTGATG ACAGTGGATATAACCATCCTGTGCCTGTCAATGTCATTGGTGGGACAAAG AAGCAGATTCAGAAAAACAGGTATTTCTTTCGGTTTTCGCATTGCCACGT GTTTCTGTTTGCTTAGACTATTTTATTCCACAGCCAACTTACATAGGGAC AAAAACACATATTGGATGACAGGTGGCCAGTGCCCGAGCCATATTGGTAT CATGGCGCACTTGATGCGAGTGTTCTTGATCTAGGCAAGCATATTGGGCG GCGTCTTAATTAGACATCACATTGCTGGAGTATCTAATTAACCTTGTTCT GCTTATCAAGCTAGTATCTAACAAACCTTTGGTGCGGTTGCCGTGCTGTT TATATCTTACTAGTATTTGACAGACCTGTCTAGGATATATGCAAGTTAGA CTTGTGTTGTAGGGTTATTTATGTGACTTTGCCTCTTGTAACTTACAAGT TGGTTCAAGGCTCTCATGGACCTTGTTATGCCTCATCTAACAGACCTTTG GTGCTGTCGCTGTACTGTTTATCATACTTCGACTGTTGTAACTTACAAGT CGGCTCGAGAGGCGATTACGTCACAAGCACTGTGCCGTTGGTGCTAATCA GCTAGTTCCTGCTATGGTAATCTCCTGTGCTTTCCTCGTGTTGGTGCTAG TAATCAGCGAGCCCCTGCTACGGTAAGAAAGTGGGTAGATGCTAGTTCCT GCTATGGTAATCTCCTGTGCTTTCCTCGTGTTGGTGCTAGTAATCAGCGA GCCCCTGCTATGGTAAGAAAGTGGGTAGATGCTGGTAGCAGGGTTAGCAA TTCTTCGTCCAAATGAGTTGCCATGTTTCTTTCTTTTGTTCAGGTTGTAT ATTGAGGCCATCTCTCATGGATTAATTTCGTGGATTTTGTTTATGGTTGT TGGGAACTGATAAGCT
Coding sequence (CDS) from alignment at Sh_002I17:9194..13859-
>Sh_002I17_t000020 ID=Sh_002I17_t000020|Name=Sh_002I17_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=2169bp|location=Sequence derived from alignment at Sh_002I17:9194..13859- (R570 Sugarcane cultivar)back to top
ATGAATGTGCCCACTTATACATCTTTTGCCATATTGCCAGCTGCTAGGAA
CTTGCTGACTAGGCACGTCAACTTCTTGATTGCCAATTTGCCATACAACA
CCAAGTTTTGGATAGATTTGAGCCTTTTGACATTTATATGCAAAGAAAGA
ATCAGGACTGCAAAGACCACAAGGAACAAGGTGGGGATTGATTGCACAAG
AGGTGTGAGTAGGGAGCAGAGAGCCATAAACAGAAGGAACAAACTTGAGT
CATCACTGGTTTCAAGTCGGACTTATGTCCCTAGTGGTAACAAGAGAGCC
TGGAACCGCAACATAAAATGGATGCTAGAACGTCGTGCGGCTAATGAGGC
GTATTATAATTTTGAGGAGAATCTATCTGCTATTGCAGTGCAACGATTCG
GTGAACCTTTTCCTGATAGAGAAGATCCAAATGTTGCTTTTGAGGAGAGG
TCATTTGGTGAAATAGTCAAACCTGGTCAATTAACTTATCCAATCAGTAC
TAGTTATGCTGTGGATTTGTCTTCCTTGGTCGTCTCGATTGCTTTGTTTG
ATGGAGATAAGATGTTATTTGCATGCTCGGGCATACCTATACCTCACGGA
AGAACTAGACAAAGCCTAACAAGATTTGTGACATCAGCACATTTGGTTAC
ACAATTCAACAAGAATAGAAATAAAGATGATAAGTTGAGGGTTGCAGTGC
GCCTTCCTAATAATACAGGTACCGATGGGTTCTTAGGACTATATGATAAA
GACATTGCTATCGTCACATGCTTGGGCTTCCTAGGAGTCCGTCCTATAGA
TCTGGATCATAAGGCAAAACCTTTCCCTGGTGATAGTTTGAAAGCTGCTG
GGCGTGCCTTCAACTCTGGCAGTTTGATGGCCATGCGTGGATCTCTGTAT
CAGAAACGCCCCCTCAAACACCTCGAACGCCTCAACACCTGGGTTTCTGA
TAGTCAAGATATCTCTAAGGCTGTACTTGGAGGGCCACTTCTGGGGTGGG
ATAATAAAATTGTCGGGATGAGCTTAGATATTTATGACCCTGGTGATGCA
AATTTGAGATACACCTTCCTACCAATGGACTTACTTTGCAAACGTTTGAA
GCATTTTCAGATACTCAATCCTGAAAAACTACACTTCCGTGGATATACGT
TGCCTAAAGATGTATCAAGTGTAGTTCCTTCAGGGTTTATGCAAACTATT
TGCAGGTTAAAGTCCTGTGACTATCCCATTCCACCACCGCTTGTGCTCGA
ATTCAATGGGCAATTGCTTAATCATTTTGAAGAATGCTTTGGTGAATTAC
TTCCTTGGAAAGGGTATCCCTTTGGTCATACACCCGGTGGCTCTGGGGAG
CGCGTCTGGAATCAACTTCCAAAAGATGTTGTGACAGATGTATCCCGTCG
TGTTGTCTCACTTGCTTCATTCAATGGGTATGTGAGATCTTTTGCATGCA
CAGGCTTGCTTATAAAATGGCATGGAAGCAAAGCTAAGCACACTGTCATC
CTGACTTCAGCCAGTTTGGTTAGAGGTCGTTGTAATGAGGATAGCATTGA
TAATAGCTTGACGATTGAGGTGTTTCTCCCACCGAATCAACGTGCTGGTG
GGACATTGGAATTTTATAATTTAGACTATAACATTGCTATTGTCAGTCTC
AAGAAGAATTTCAGTGCTATTTGTCCGGACGACATCTTTGCTAAAAGTGC
ACAAAACACATCTAAAAAGGTTGTAGCTGTAGGGCGTGATGCTAAATTTG
GTATATTGATGGCCGCAAGTGGTGAAGTGAAGCGTGGAAACAAGGGTTGC
AAACTTGATTGCAAAGATGTTCAGCTGTCTACTTGTAAAATCAAGAAGGC
TGGGATTGGAGGCCCGCTTATTAATCTTGATGGGAGTTTTGTTGGCATGA
ACTTCTACGATGGAAGTGGTGTAACTCCTTTCTTACCAAGGCACAAGATT
GTTGAAGTTCTAAGTGGAGCGGATTCTTTGCCATCAGAATGTGGATATAA
CCATCCTGTGCCTGTCAATGTCATTGGTGGGACAAAGAAGCAGATTCAGA
AAAACAGACCTTTGGTGCTGTCGCTGTACTGTTTATCATACTTCGACTGT
TGTAACTTACAAGTCGGCTCGAGAGGCGATTACGTCACAAGCACTGTGCC
GTTGGTGCTAATCAGCTAG
