Sh_002I17_t000030

Overview
NameSh_002I17_t000030
Unique NameSh_002I17_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:21569..21802
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Putative wpk4 protein kinase
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000030Sh_002I17_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000030Sh_002I17_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000030 ID=Sh_002I17_t000030|Name=Sh_002I17_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=234bp
ATGATCCGCCATGGCGACTACCATTGCCCGCCGTGCTTCAGTACCGGCCT
CGTTCGCCGCATCATTAGCCCGACCCGGCGCAAGAAGGACTTGAGACCCC
TCGAGCTATGCGACTCTGACTCTGATTCTAACGACGAGTCGACGGCGTCA
TCTACGTCATCGGGGGATACAGCCTCCCCAATGGCATGCTCCATGCATAC
CTCGGTGTCGGCACCGTCACTAACCACGCTCTAG
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protein sequence of Sh_002I17_p000030

>Sh_002I17_p000030 ID=Sh_002I17_p000030|Name=Sh_002I17_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=78bp
MIRHGDYHCPPCFSTGLVRRIISPTRRKKDLRPLELCDSDSDSNDESTAS
STSSGDTASPMACSMHTSVSAPSLTTL*
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mRNA from alignment at Sh_002I17:21569..21802+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000030 ID=Sh_002I17_t000030|Name=Sh_002I17_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=234bp|location=Sequence derived from alignment at Sh_002I17:21569..21802+ (R570 Sugarcane cultivar)
ATGATCCGCCATGGCGACTACCATTGCCCGCCGTGCTTCAGTACCGGCCT CGTTCGCCGCATCATTAGCCCGACCCGGCGCAAGAAGGACTTGAGACCCC TCGAGCTATGCGACTCTGACTCTGATTCTAACGACGAGTCGACGGCGTCA TCTACGTCATCGGGGGATACAGCCTCCCCAATGGCATGCTCCATGCATAC CTCGGTGTCGGCACCGTCACTAACCACGCTCTAG
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Coding sequence (CDS) from alignment at Sh_002I17:21569..21802+

>Sh_002I17_t000030 ID=Sh_002I17_t000030|Name=Sh_002I17_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=234bp|location=Sequence derived from alignment at Sh_002I17:21569..21802+ (R570 Sugarcane cultivar)
ATGATCCGCCATGGCGACTACCATTGCCCGCCGTGCTTCAGTACCGGCCT
CGTTCGCCGCATCATTAGCCCGACCCGGCGCAAGAAGGACTTGAGACCCC
TCGAGCTATGCGACTCTGACTCTGATTCTAACGACGAGTCGACGGCGTCA
TCTACGTCATCGGGGGATACAGCCTCCCCAATGGCATGCTCCATGCATAC
CTCGGTGTCGGCACCGTCACTAACCACGCTCTAG
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