Sh_002I17_t000050

Overview
NameSh_002I17_t000050
Unique NameSh_002I17_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length759
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I17contigSh_002I17:33688..34446
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteNon-specific serine/threonine protein kinase
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I17_g000050Sh_002I17_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I17_p000050Sh_002I17_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I17_t000050 ID=Sh_002I17_t000050|Name=Sh_002I17_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=759bp
ATGCACATCCATGAGCTCATGGCGACCAAGAAGAGCATCTTCGTCATCAT
GGAGTTCGGCGATGACGACTCCCTCAATGCCCACCTCGTCCACCGCATCG
ACCGTGGCATCGGCGAGGCCTCAGCCCGCTGTGTACGTATTCCAGCAGCT
CGTGTCCACGCTCGACTATGCCACTCGCTTGGTGTGTACCACTGCGACAT
CAAGCCCGACAACATCCTCGTCGACGCCACTGGCCACATCAAGGTCTCTG
ATTTCGGGCTCTTGGCCCTCGCCAGCACGGCACAGCGGGAGGCGCTACTC
CACACCATCTGCAGGACACCCATGTTCATCGCGCCTGAGGTGTTCCTGCG
CTGCGGCTACGATGGCGCCAGGGCCGATGTCTGGTCCTACGGTGTTGCCC
TCTTCGCGCTCGTGGCAGGCCGCTTCCTCTTCAATCACAAGGACACAAGC
TTCTACCACATGATCCGCCGTTGTGACTACTACTACCCGCCGTTTTCTAT
ACTGGCCTTGTCGCCCATCGGCCTCGTCCGCCACATCCTCGGCCCTAACC
GGGCGTGCTGTATCGCCATACCGCAGGTCAAGAAAAATCTTTGGTTCAAG
AAGGACTTCAAGGAGATCCCAGAGAGCCTCAGTGAGCCCGAGTTGCGTGA
CTCTAACTCCGTTTCTAACGACGAGTTGATGGCGTCATCTACATCATTGG
GGATACGACCTCCCCGATGGTGTGCCCCATGCATACCTCGGTGTCTGCGC
TGTTGCTGA
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protein sequence of Sh_002I17_p000050

>Sh_002I17_p000050 ID=Sh_002I17_p000050|Name=Sh_002I17_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=253bp
MHIHELMATKKSIFVIMEFGDDDSLNAHLVHRIDRGIGEASARCVRIPAA
RVHARLCHSLGVYHCDIKPDNILVDATGHIKVSDFGLLALASTAQREALL
HTICRTPMFIAPEVFLRCGYDGARADVWSYGVALFALVAGRFLFNHKDTS
FYHMIRRCDYYYPPFSILALSPIGLVRHILGPNRACCIAIPQVKKNLWFK
KDFKEIPESLSEPELRDSNSVSNDELMASSTSLGIRPPRWCAPCIPRCLR
CC*
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mRNA from alignment at Sh_002I17:33688..34446+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I17_t000050 ID=Sh_002I17_t000050|Name=Sh_002I17_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=759bp|location=Sequence derived from alignment at Sh_002I17:33688..34446+ (R570 Sugarcane cultivar)
ATGCACATCCATGAGCTCATGGCGACCAAGAAGAGCATCTTCGTCATCAT GGAGTTCGGCGATGACGACTCCCTCAATGCCCACCTCGTCCACCGCATCG ACCGTGGCATCGGCGAGGCCTCAGCCCGCTGTGTACGTATTCCAGCAGCT CGTGTCCACGCTCGACTATGCCACTCGCTTGGTGTGTACCACTGCGACAT CAAGCCCGACAACATCCTCGTCGACGCCACTGGCCACATCAAGGTCTCTG ATTTCGGGCTCTTGGCCCTCGCCAGCACGGCACAGCGGGAGGCGCTACTC CACACCATCTGCAGGACACCCATGTTCATCGCGCCTGAGGTGTTCCTGCG CTGCGGCTACGATGGCGCCAGGGCCGATGTCTGGTCCTACGGTGTTGCCC TCTTCGCGCTCGTGGCAGGCCGCTTCCTCTTCAATCACAAGGACACAAGC TTCTACCACATGATCCGCCGTTGTGACTACTACTACCCGCCGTTTTCTAT ACTGGCCTTGTCGCCCATCGGCCTCGTCCGCCACATCCTCGGCCCTAACC GGGCGTGCTGTATCGCCATACCGCAGGTCAAGAAAAATCTTTGGTTCAAG AAGGACTTCAAGGAGATCCCAGAGAGCCTCAGTGAGCCCGAGTTGCGTGA CTCTAACTCCGTTTCTAACGACGAGTTGATGGCGTCATCTACATCATTGG GGATACGACCTCCCCGATGGTGTGCCCCATGCATACCTCGGTGTCTGCGC TGTTGCTGA
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Coding sequence (CDS) from alignment at Sh_002I17:33688..34446+

>Sh_002I17_t000050 ID=Sh_002I17_t000050|Name=Sh_002I17_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=759bp|location=Sequence derived from alignment at Sh_002I17:33688..34446+ (R570 Sugarcane cultivar)
ATGCACATCCATGAGCTCATGGCGACCAAGAAGAGCATCTTCGTCATCAT
GGAGTTCGGCGATGACGACTCCCTCAATGCCCACCTCGTCCACCGCATCG
ACCGTGGCATCGGCGAGGCCTCAGCCCGCTGTGTACGTATTCCAGCAGCT
CGTGTCCACGCTCGACTATGCCACTCGCTTGGTGTGTACCACTGCGACAT
CAAGCCCGACAACATCCTCGTCGACGCCACTGGCCACATCAAGGTCTCTG
ATTTCGGGCTCTTGGCCCTCGCCAGCACGGCACAGCGGGAGGCGCTACTC
CACACCATCTGCAGGACACCCATGTTCATCGCGCCTGAGGTGTTCCTGCG
CTGCGGCTACGATGGCGCCAGGGCCGATGTCTGGTCCTACGGTGTTGCCC
TCTTCGCGCTCGTGGCAGGCCGCTTCCTCTTCAATCACAAGGACACAAGC
TTCTACCACATGATCCGCCGTTGTGACTACTACTACCCGCCGTTTTCTAT
ACTGGCCTTGTCGCCCATCGGCCTCGTCCGCCACATCCTCGGCCCTAACC
GGGCGTGCTGTATCGCCATACCGCAGGTCAAGAAAAATCTTTGGTTCAAG
AAGGACTTCAAGGAGATCCCAGAGAGCCTCAGTGAGCCCGAGTTGCGTGA
CTCTAACTCCGTTTCTAACGACGAGTTGATGGCGTCATCTACATCATTGG
GGATACGACCTCCCCGATGGTGTGCCCCATGCATACCTCGGTGTCTGCGC
TGTTGCTGA
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