Sh_002I19_t000050

Overview
NameSh_002I19_t000050
Unique NameSh_002I19_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002I19contigSh_002I19:59935..63855
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteNicotianamine aminotransferase1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002I19_g000050Sh_002I19_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002I19_p000050Sh_002I19_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002I19_t000050 ID=Sh_002I19_t000050|Name=Sh_002I19_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1287bp
ATGGCGACCCACGGCGGCGAGAACGGCAGCGGGCACGCGGCGGAGTGGCG
GTTCGCGCGGGTGGCCAAGGAGGGGGAGGGCGCGCTGGCCGTGGCCGGGG
ACAAGCTGAGCATCCGGGCGGCGCGGTTCAAGATCAGAGCGAGCGTGGAC
GCGCGCGACCCGCGGCCCGTTCTGCCGCTGGCGCACGGGGACCCCTCGGT
GTTCCCGGCCTTCCGCACCGCCGCCGAGGCCGAGGACGCCGTGGCCGCCG
CGCTCCGGACGGGCAAGTTCAACTGCTACCCCGCCGGCGTCGGCCTCCCC
GACGCCCGCCGTTCTCTGGCGGAGCACCTGTCAAGTGATCTTCCATACAA
GCTGTCAACTGATGACATCTTCCTCACTGCTGGAGGCACTCAAGCCATTG
AGGTTGTCGTCTCAGTCCTTGCTCAACCGGGCACCAACATATTGCTCCCG
AGACCAGGCTATCCAAACTATGAGGCGCGTGCAGGACTGCACAACTTAGA
AGTTCGTCGTTTCGATCTGATTCCTGAAAGAGGGTGGGAAATTGATATTG
ACTCTCTGGAGACGATTGCTGACAAGAACACCACCGCAATGGTCATCATA
AACCCCAACAATCCTTGTGGGAGTGTCGCGGAGGTAGCAAGGAAGCTTGG
AATACTAGTCATCGCTGATGAAGTATATGGAAATCTGGTGTTTGGGGACA
CCCCTTTCGTCCCCATGGGTGTCTTTGGCCACGTTGCCCCTGTGTTGAGC
ATAGGATCACTATCAAAGAGATGGATAGTGCCTGGGTGGCGACTTGGTTG
GGTAGCTGTATGTGATCCCAACAAGATTCTGCAAAAAACAAAGATCATTG
CATCGATCACAAACTTCCTTAACGTTTCGACTGATCCAGCAACTTTTATT
CAGGGAGCACTTCCCCATATTCTTGAGAACACAACGGAAGATTTTTTCCA
GAGGATCATTGGTCTGCTAGCGGAAACATCAGATATATGTTACAGAGAAA
TAAAGGACATCAAGTGCATCACTTGCCCTCACAAGCCAGAAGGTTCCATG
TTTGTCATGGTGAAATTAAATTTGTATCTTTTGGAAGGGATCCATGATGA
TATTGATTTTTGCTGCAAGCTGGCAAAAGAAGAGTCCGTGATTTTGTGTC
CAGGGAGTGTTTTGGGAATGGAAAACTGGATCCGTATCACTTTCGCCATT
GATTCATCTTCTCTTCTTGATGGTCTTGAGAGGATCAAATCTTTCTGCCA
AAGGCATAAGAAGAAGAATTTGCTTAATGGCCATTAA
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protein sequence of Sh_002I19_p000050

>Sh_002I19_p000050 ID=Sh_002I19_p000050|Name=Sh_002I19_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=429bp
MATHGGENGSGHAAEWRFARVAKEGEGALAVAGDKLSIRAARFKIRASVD
ARDPRPVLPLAHGDPSVFPAFRTAAEAEDAVAAALRTGKFNCYPAGVGLP
DARRSLAEHLSSDLPYKLSTDDIFLTAGGTQAIEVVVSVLAQPGTNILLP
RPGYPNYEARAGLHNLEVRRFDLIPERGWEIDIDSLETIADKNTTAMVII
NPNNPCGSVAEVARKLGILVIADEVYGNLVFGDTPFVPMGVFGHVAPVLS
IGSLSKRWIVPGWRLGWVAVCDPNKILQKTKIIASITNFLNVSTDPATFI
QGALPHILENTTEDFFQRIIGLLAETSDICYREIKDIKCITCPHKPEGSM
FVMVKLNLYLLEGIHDDIDFCCKLAKEESVILCPGSVLGMENWIRITFAI
DSSSLLDGLERIKSFCQRHKKKNLLNGH*
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mRNA from alignment at Sh_002I19:59935..63855+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002I19_t000050 ID=Sh_002I19_t000050|Name=Sh_002I19_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=3921bp|location=Sequence derived from alignment at Sh_002I19:59935..63855+ (R570 Sugarcane cultivar)
TCTCTGTGTCTCTCTCTCGCCCCCTGTTTGCCCATCCCATCCCATGGCGA CCCACGGCGGCGAGAACGGCAGCGGGCACGCGGCGGAGTGGCGGTTCGCG CGGGTGGCCAAGGAGGGGGAGGGCGCGCTGGCCGTGGCCGGGGACAAGCT GAGCATCCGGGCGGCGCGGTTCAAGATCAGAGCGAGCGTGGACGCGCGCG ACCCGCGGCCCGTTCTGCCGCTGGCGCACGGGGACCCCTCGGTGTTCCCG GCCTTCCGCACCGCCGCCGAGGCCGAGGACGCCGTGGCCGCCGCGCTCCG GACGGGCAAGTTCAACTGCTACCCCGCCGGCGTCGGCCTCCCCGACGCCC GCCGGTACGTACGGTTACGGTGACTCGATTTGAATCTCTGCATGCTTGCA ATCTTATCTACTACTATGTCTTTAAATCAAATCATTGTTTAGTAGTACAG CTCAAGTTCAGAGCTGTCGTGTTCATCGATCGTATCCTTCCTAGCAGGGA TGAAAACGGATCGGATACGGGCGGATATCACTGATATCATATTTGTTTTC ATATTTCTGGTCGGATTCGGATTCGAATACGGATAGTGTCAGCCATGCCG AATAGGATACGATTGGATGTCGACATCATAAATATGCGATTTAAATATTC GGATACGGATACGGTATCGGATGTTGAATATCTGGACTCGGATACGGACA GATCTGAACCCCTCTAAACGAATTCGGTCTCGAATACGGTCGGAAAATAT CCGTACCGTTTTCATCCCTAGTTCTTAGTATATATAGGCATCTCAAAGAA ATTTTTATAGTATACAGTGTATTAGGCATCGTTAGTACCACTCAAGTTCA GAACAATCTGTCTTTACCGGCCTCATTTTGTAAGCTCAAGTCCCGATAGC CATGTGATCGATAGGCATGGCCAAGCAATTTACCCAGCTAGTCACGCGCC ATGCATGCGTCCGACGTGGCACGCCACCTGCGTTGTGGCTCTCTCTGGGT GGGCTGCCGTAGCCAGGCGTTTTGTTTTTGGCGAAACCACCTCTGAAAGT TTTTCTGCAATCAAGGGAGAAAAGAGGCTTTCTGAAGTGCTTCTCATGAT AGAGACGTGTCTTGACGTGTCATGATAGGGGTAGTACCACCATGGAGTAT TTCCTAAGAAGAAAACGCTACCGGAAATGAAGGAAACTACCTACCTTGCT GGAACTGGAATAAACTTGCTTGTTTTGATGAAGCACTTACAGGAGTCATG CGTGGCAGGCGAAACACTGCCAAATAAACATAAACATTCCGGTCTCTATG GGATAATTAGCAGTATATATATTCTCTAAAAGTATTGCAGTATATTATCT TTCTTAATGAGCTTCTATGAATAATTTCACTTTTTCATATATTCTTGCAT GCTTATTATTGACCAGCCGGCGTAACCTGTTTACATTTAAAATTTTAAAT CCGTCCTTATATGAATATGAATACTGAATTCAATTTTGCTGCTTTATTTA AATAATAGTTCTCTGGCGGAGCACCTGTCAAGTGATCTTCCATACAAGCT GTCAACTGATGACATCTTCCTCACTGCTGGAGGCACTCAAGCCATTGAGG TTGTCGTCTCAGTCCTTGCTCAACCGGGCACCAACATATTGCTCCCGAGA CCAGGCTATCCAAACTATGAGGCGCGTGCAGGACTGCACAACTTAGAAGT TCGTCGTTTCGATCTGATTCCTGAAAGAGGGTGGGAAATTGATATTGACT CTCTGGAGACGATTGCTGACAAGAACACCACCGCAATGGTCATCATAAAC CCCAACAATCCTTGTGGGAGTGTCTATACCCGTGAACATTTAGCCAAGGC ATGGCTGCTGCTTATTTTACTGATCATTCAAATGAAATTGAATTAGTTTT TTAACTAATCTTTGTGGAGACCAATGCAAATTGTGTTCTAAGCATGTCTT GATGTCATTTAGGTCGCGGAGGTAGCAAGGAAGCTTGGAATACTAGTCAT CGCTGATGAAGTATATGGAAATCTGGTGTTTGGGGACACCCCTTTCGTCC CCATGGGTGTCTTTGGCCACGTTGCCCCTGTGTTGAGCATAGGATCACTA TCAAAGAGATGGATAGTGCCTGGGTGGCGACTTGGTTGGGTAGCTGTATG TGATCCCAACAAGATTCTGCAAAAAACAAAGGTAAATCAGTAGCCCATAT CTTACGTCTCCTTATTTTAGGTAGTGTTGCTACGCTGTTTCACTAACTAC CGATTTTTGCAGATCATTGCATCGATCACAAACTTCCTTAACGTTTCGAC TGATCCAGCAACTTTTATTCAGGTTAGTGGCTTGAACATTTTCCCCTACA CTGTGGTATCCATTCATTTCAATTTTTCTCTCGACATAGGAGAGCTGCAT ATCTTTTATATAATAAATACAGACCTCCATTTCAAATTATTGAAAATGAT TATACGCAAACATGCGATAGATTCTTTTAATAATAATACCTTGTGAAATA ATTGTCTCATCAATTCAAATGTGTTTAAAATAATGTTGATTTTGAGTTGT GCTATTTCATTTTGCCCTGCGATCTGTGGCAGGAAAAGTGCAATGTTATT TTAGATAACATACCAAGTTTTGTCATTACGAGATCTGAAAAATGGGAAAT TGTCTGTATACATGCTTTCAGGATCTAGTTCCTAACTAGTATTCATTTTT ATTTTCGCAAGCACGTGTCTTACATATTTTATCTCAGATAACTAAGAGTT AGTTACTGTAAAAATTTGATTAGGGAGCACTTCCCCATATTCTTGAGAAC ACAACGGAAGATTTTTTCCAGAGGATCATTGGTCTGCTAGCGGAAACATC AGATATATGTTACAGAGAAATAAAGGACATCAAGTGCATCACTTGCCCTC ACAAGCCAGAAGGTTCCATGTTTGTCATGGTAAGCAATTTACTAAAATAT ATGTTGTTATAGTGATTGAACAGAAAAAAATAATAATACAAAAGAAACAG TGAAGGATTGTGTTAGAGCAACCAGCACCTAAAGTGCTAATATACTTAAA GTTTCAACTTAATCCACTAGCTCTTGTCTATTTAGAAATTATTTATTTTT TCATCAAAATTAGTCATGTTATTATATAAACATTGTATCTCCATATATGT ATCTGTTACACACAACCACACTGAATGAAACATACAGATAATCTTAGAAC TTGTTTGTCAGTTTTCTAACTTGGAGAAGTCACAAACAGGTGAAATTAAA TTTGTATCTTTTGGAAGGGATCCATGATGATATTGATTTTTGCTGCAAGC TGGCAAAAGAAGAGTCCGTGATTTTGTGTCCAGGTGAGATGAATTTGATT TTTTTTGGAAAAGATTATATATCTGACAAAAACTCAGTTTTGGCTCTAGC AATTGTATGTTTCAGGTTACAAGTATTCCAGGCTTAACTGTACGTTTGTG CTCAGAAAATGCTTTAAGAAATTAGCAATGCATTAATGCTAGAATACAAT TATGAATCGTCTTTTATTTATATATTGAACAAAATGTAACATAGGTGATT CACTAATATATAAATGTTGGGATGATTCTCCTTTATCTTCTTATTATAGA TGTTAGTGAAGAATAGACAGAGAGATATACTTGTTTAGGCTAGACAGGTA GATATTTGTTACGTTCACAAAAAAAGGTAGGTATTTGTTACTCTAAGGTA CTGGTTAATATAAGTGTCTCATCTTAAATTGATACCAACGTCTCCTTAAT CTTTACATACATGTGTTTCTCCAATGCAGGGAGTGTTTTGGGAATGGAAA ACTGGATCCGTATCACTTTCGCCATTGATTCATCTTCTCTTCTTGATGGT CTTGAGAGGATCAAATCTTTCTGCCAAAGGCATAAGAAGAAGAATTTGCT TAATGGCCATTAACTGTATCT
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Coding sequence (CDS) from alignment at Sh_002I19:59935..63855+

>Sh_002I19_t000050 ID=Sh_002I19_t000050|Name=Sh_002I19_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=1287bp|location=Sequence derived from alignment at Sh_002I19:59935..63855+ (R570 Sugarcane cultivar)
ATGGCGACCCACGGCGGCGAGAACGGCAGCGGGCACGCGGCGGAGTGGCG
GTTCGCGCGGGTGGCCAAGGAGGGGGAGGGCGCGCTGGCCGTGGCCGGGG
ACAAGCTGAGCATCCGGGCGGCGCGGTTCAAGATCAGAGCGAGCGTGGAC
GCGCGCGACCCGCGGCCCGTTCTGCCGCTGGCGCACGGGGACCCCTCGGT
GTTCCCGGCCTTCCGCACCGCCGCCGAGGCCGAGGACGCCGTGGCCGCCG
CGCTCCGGACGGGCAAGTTCAACTGCTACCCCGCCGGCGTCGGCCTCCCC
GACGCCCGCCGTTCTCTGGCGGAGCACCTGTCAAGTGATCTTCCATACAA
GCTGTCAACTGATGACATCTTCCTCACTGCTGGAGGCACTCAAGCCATTG
AGGTTGTCGTCTCAGTCCTTGCTCAACCGGGCACCAACATATTGCTCCCG
AGACCAGGCTATCCAAACTATGAGGCGCGTGCAGGACTGCACAACTTAGA
AGTTCGTCGTTTCGATCTGATTCCTGAAAGAGGGTGGGAAATTGATATTG
ACTCTCTGGAGACGATTGCTGACAAGAACACCACCGCAATGGTCATCATA
AACCCCAACAATCCTTGTGGGAGTGTCGCGGAGGTAGCAAGGAAGCTTGG
AATACTAGTCATCGCTGATGAAGTATATGGAAATCTGGTGTTTGGGGACA
CCCCTTTCGTCCCCATGGGTGTCTTTGGCCACGTTGCCCCTGTGTTGAGC
ATAGGATCACTATCAAAGAGATGGATAGTGCCTGGGTGGCGACTTGGTTG
GGTAGCTGTATGTGATCCCAACAAGATTCTGCAAAAAACAAAGATCATTG
CATCGATCACAAACTTCCTTAACGTTTCGACTGATCCAGCAACTTTTATT
CAGGGAGCACTTCCCCATATTCTTGAGAACACAACGGAAGATTTTTTCCA
GAGGATCATTGGTCTGCTAGCGGAAACATCAGATATATGTTACAGAGAAA
TAAAGGACATCAAGTGCATCACTTGCCCTCACAAGCCAGAAGGTTCCATG
TTTGTCATGGTGAAATTAAATTTGTATCTTTTGGAAGGGATCCATGATGA
TATTGATTTTTGCTGCAAGCTGGCAAAAGAAGAGTCCGTGATTTTGTGTC
CAGGGAGTGTTTTGGGAATGGAAAACTGGATCCGTATCACTTTCGCCATT
GATTCATCTTCTCTTCTTGATGGTCTTGAGAGGATCAAATCTTTCTGCCA
AAGGCATAAGAAGAAGAATTTGCTTAATGGCCATTAA
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