Sh_002L05_t000020

Overview
NameSh_002L05_t000020
Unique NameSh_002L05_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1005
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002L05contigSh_002L05:16594..18693
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePutative FIP1[III]-like protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002L05_g000020Sh_002L05_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002L05_p000020Sh_002L05_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002L05_t000020 ID=Sh_002L05_t000020|Name=Sh_002L05_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1005bp
ATGGCTGACTCATTGGACGCGGCTGCCGCCTTCGCGGTATCCACCAACGA
CAACAATGTCGACGACGTCGAGGACCTTTACGCGGACCTCGATGAACAGG
TCGCCGCCGCGCTCGCCGCCGCCGGGGAGAGTGGCGGCTCAAACGCGAGG
GATTCCGACCCGGTTACCGACGGCGAGGGGGAGGTCCCAGAGCCCGACGC
GAACGAGGCGGTGGATTTGGGCGACGGGACTGAGGGCTACAGCAGCAGCG
ACGAGGAGAGCGATGATGGCCTCCGCATCGTGCTGAACGAGGACACCAGC
GCGCCACTGCCGCCGCTCCCTGTGGGGCGCGGCGAGGGATGCGTGGATGA
GGATGAGGAGGGGGGTGATACGGGCAACCGTGTGAAGGGTTCATCTGTTA
ACGATGGCGGCTGGGCAACGGTTGGTGGGCTCCATTGCAAGGGACTTATT
GAGAAAACGCCATTACCTAGCATGGGGCAAATCGATCGAGGTCGCCAGCA
TGTGTTTCAGCGTGATTATAACTTTACCTTGCCAAGAAACGGCACAATTT
TCGACATAGGCATTGAAGCATTTCAACAGAAGCCTTGGAGACAGCAAGGG
GTGGATCTTACTGACTACTTCAATTTTAGTCTGGATGAAGAAGGCTGGAG
AAAATATTGGTGTAGCATGAAACAATTAAGGTTAGGGGCTAGATCACTTG
TAAATGAAACATCAGGATTGGAGCAGGAATCATACAAACTGAAATCTGTC
AAAGCAATGTCCAAGGTAGCAAATGATTCTGGATCTGAAGGAAGAAATGG
CCTTGGCAAGCCAAAAGGCAGAGCAATCCATGTTGAAGGCAGTGCGTGCG
AACGTGTTCCTTCAGCAGACTTGTGGCGTCCAATACAAAGGGATTCAGAT
GTTGTGATTCAAGTAAACATGACACTTTCGCCATCAAATCAGTCCACTTC
GGATGACAGCTCAAAGTTAAATCACAATGGTGTGGCTACTGAAAGGTATG
CATAG
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protein sequence of Sh_002L05_p000020

>Sh_002L05_p000020 ID=Sh_002L05_p000020|Name=Sh_002L05_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=335bp
MADSLDAAAAFAVSTNDNNVDDVEDLYADLDEQVAAALAAAGESGGSNAR
DSDPVTDGEGEVPEPDANEAVDLGDGTEGYSSSDEESDDGLRIVLNEDTS
APLPPLPVGRGEGCVDEDEEGGDTGNRVKGSSVNDGGWATVGGLHCKGLI
EKTPLPSMGQIDRGRQHVFQRDYNFTLPRNGTIFDIGIEAFQQKPWRQQG
VDLTDYFNFSLDEEGWRKYWCSMKQLRLGARSLVNETSGLEQESYKLKSV
KAMSKVANDSGSEGRNGLGKPKGRAIHVEGSACERVPSADLWRPIQRDSD
VVIQVNMTLSPSNQSTSDDSSKLNHNGVATERYA*
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mRNA from alignment at Sh_002L05:16594..18693+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002L05_t000020 ID=Sh_002L05_t000020|Name=Sh_002L05_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2100bp|location=Sequence derived from alignment at Sh_002L05:16594..18693+ (R570 Sugarcane cultivar)
TGCCTCCGCAAGTTCTAGGGTTTTAGGCTTTAAGCAGCGGCGGTCCAAGG
TTTTTGGGCGACCTTCGTCGGCGCGCCACCGATGGCTTAGCAGCTAGTAC
ATCACCCGTGCTCCCTCTGCTGCTGCGCCGCTCCATGGCTGACTCATTGG
ACGCGGCTGCCGCCTTCGCGGTATCCACCAACGACAACAATGTCGACGAC
GTCGAGGACCTTTACGCGGACCTCGATGAACAGGTCGCCGCCGCGCTCGC
CGCCGCCGGGGAGAGTGGCGGCTCAAACGCGAGGGATTCCGACCCGGTTA
CCGACGGCGAGGGGGAGGTCCCAGAGCCCGACGCGAACGAGGCGGTGGAT
TTGGGCGACGGGACTGAGGGCTACAGCAGCAGCGACGAGGAGAGCGATGA
TGGCCTCCGCATCGTGCTGAACGAGGACACCAGCGCGCCACTGCCGCCGC
TCCCTGTGGGGCGCGGCGAGGGATGCGTGGATGAGGATGAGGAGGGGGGT
GATACGGGCAACCGTGTGAAGGGTTCATCTGTTAACGATGGCGGCTGGGC
AACGGTATGATTCTTGAATTGGCTGAATTATTGGTTTTATTAAGATCCTT
ATTGATGCTGTAGTGCGAAATTGGAGTATTAAGGTGCAGTTAATTCAGGG
GAGGCTCTAGATACTCCGTTGCTGTGGCACATTGCATGTATTATGCGGGT
TCCTGCCAATCATACGCAAACTTCTCGTGAGCTTCAAGTGGATTGGCTCT
CTATTCCAATTTCCTCTGTGCTGAGACATGTAGCTCGAAGCTGCTGTGTT
GCAGTTGTTTACTTAATGATGTATGCATACCTGAGCAAAACAATTTGGTT
GAATGTATTGCAATGTGGTTTCCATCTAACTATGCAAGCCGCAGCACTAT
TGGCTCACATATATTTTTGTTTAGACAATTCGAGCTCATATCTATATATA
TATATATTTTTTTTGTTTGGACTGCGCTGTTCCAGGTTGGTGGGCTCCAT
TGCAAGGGACTTATTGAGAAAACGCCATTACCTAGCATGGGGCAAATCGA
TCGAGGTCGCCAGCATGTGTTTCAGCGTGATTATAACTTTACCTTGCCAA
GAAACGGGTGAGCTTCCTTCTCGTACGAATGCAAAAACATGTAATTCATG
TAGTTTTCATAGTGGTCTTCTCTGTTATTATAGGTGTCAAAAGAGAAAAA
ATATTGTCCTTGACTACTATGCATAAATTGGCTTGCTTGTATGTATGCCT
TCATGTCATAACTCATAAGTGTGATGCAGTAGCTTTAGTGCTGACCTTAA
CACTGTGTTATGTTACTTTAGCACAATTTTCGACATAGGCATTGAAGCAT
TTCAACAGAAGCCTTGGAGACAGCAAGGGGTGGATCTTACTGACTACTTC
AATTTTAGTCTGGATGAAGAAGGCTGGAGAAAATATTGGTGTAGCATGGT
ACTTTGGTCATGCTATTTCGTATCAGCATTTGTGTAGCAGTTTCTAAGCT
GTCAAATGATAATTGAGTTAAGTACAACACTTCTTTTTGTGCAGAAACAA
TTAAGGTTAGGGGCTAGATCACTTGTAAATGAAACATCAGGATTGGAGCA
GGTAAGGCATAAACCTTGGATGCTTTCCATATTTCTTGTTAAGCAAAATC
TTATGATCTCTGCGTTCAGGAATCATACAAACTGAAATCTGTCAAAGCAA
TGTCCAAGGTAGCAAATGATTCTGGATCTGAAGGAAGAAATGGCCTTGGC
AAGGTAATATGAAGTCTTGAATTAGCATATGTTCACGTGTAATCTATCAG
AGCTAACTTGGTTTTGTAAATCTAGCCAAAAGGCAGAGCAATCCATGTTG
AAGGCAGTGCGTGCGAACGTGTTCCTTCAGCAGACTTGTGGCGTCCAATA
CAAAGGGATTCAGATGTTGTGATTCAAGTATGTTTCAGCAATGTCTTTTT
TGTATGGTTGAGCAATATCTTCTGGCTGTATTCTAACAAGTTAATATGGT
TGAGCAGGTAAACATGACACTTTCGCCATCAAATCAGTCCACTTCGGATG
ACAGCTCAAAGTTAAATCACAATGGTGTGGCTACTGAAAGGTATGCATAG
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Coding sequence (CDS) from alignment at Sh_002L05:16594..18693+

>Sh_002L05_t000020 ID=Sh_002L05_t000020|Name=Sh_002L05_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=1005bp|location=Sequence derived from alignment at Sh_002L05:16594..18693+ (R570 Sugarcane cultivar)
ATGGCTGACTCATTGGACGCGGCTGCCGCCTTCGCGGTATCCACCAACGA
CAACAATGTCGACGACGTCGAGGACCTTTACGCGGACCTCGATGAACAGG
TCGCCGCCGCGCTCGCCGCCGCCGGGGAGAGTGGCGGCTCAAACGCGAGG
GATTCCGACCCGGTTACCGACGGCGAGGGGGAGGTCCCAGAGCCCGACGC
GAACGAGGCGGTGGATTTGGGCGACGGGACTGAGGGCTACAGCAGCAGCG
ACGAGGAGAGCGATGATGGCCTCCGCATCGTGCTGAACGAGGACACCAGC
GCGCCACTGCCGCCGCTCCCTGTGGGGCGCGGCGAGGGATGCGTGGATGA
GGATGAGGAGGGGGGTGATACGGGCAACCGTGTGAAGGGTTCATCTGTTA
ACGATGGCGGCTGGGCAACGGTTGGTGGGCTCCATTGCAAGGGACTTATT
GAGAAAACGCCATTACCTAGCATGGGGCAAATCGATCGAGGTCGCCAGCA
TGTGTTTCAGCGTGATTATAACTTTACCTTGCCAAGAAACGGCACAATTT
TCGACATAGGCATTGAAGCATTTCAACAGAAGCCTTGGAGACAGCAAGGG
GTGGATCTTACTGACTACTTCAATTTTAGTCTGGATGAAGAAGGCTGGAG
AAAATATTGGTGTAGCATGAAACAATTAAGGTTAGGGGCTAGATCACTTG
TAAATGAAACATCAGGATTGGAGCAGGAATCATACAAACTGAAATCTGTC
AAAGCAATGTCCAAGGTAGCAAATGATTCTGGATCTGAAGGAAGAAATGG
CCTTGGCAAGCCAAAAGGCAGAGCAATCCATGTTGAAGGCAGTGCGTGCG
AACGTGTTCCTTCAGCAGACTTGTGGCGTCCAATACAAAGGGATTCAGAT
GTTGTGATTCAAGTAAACATGACACTTTCGCCATCAAATCAGTCCACTTC
GGATGACAGCTCAAAGTTAAATCACAATGGTGTGGCTACTGAAAGGTATG
CATAG
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cirad
tripal
southgreen