Overview
Name | Sh_002L05_t000020 |
---|---|
Unique Name | Sh_002L05_t000020 |
Type | mRNA |
Organism | R570 Sugarcane cultivar (R570 (sugarcane cultivar)) |
Sequence length | 1005 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
---|---|---|
Sh_002L05 | contig | Sh_002L05:16594..18693 |
Analyses
This mRNA is derived from or has results from the following analyses
Analysis Name | Date Performed |
---|---|
Structural and functional annotation of S. officinarum | 2017-07-25 |
Properties
Property Name | Value |
---|---|
Note | Putative FIP1[III]-like protein |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type |
---|---|---|---|
Sh_002L05_g000020 | Sh_002L05_g000020 | R570 Sugarcane cultivar | gene |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
---|---|---|---|
Sh_002L05_p000020 | Sh_002L05_p000020 | R570 Sugarcane cultivar | polypeptide |
Sequences
The following sequences are available for this feature:
mRNA sequence
>Sh_002L05_t000020 ID=Sh_002L05_t000020|Name=Sh_002L05_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1005bpback to top
ATGGCTGACTCATTGGACGCGGCTGCCGCCTTCGCGGTATCCACCAACGA
CAACAATGTCGACGACGTCGAGGACCTTTACGCGGACCTCGATGAACAGG
TCGCCGCCGCGCTCGCCGCCGCCGGGGAGAGTGGCGGCTCAAACGCGAGG
GATTCCGACCCGGTTACCGACGGCGAGGGGGAGGTCCCAGAGCCCGACGC
GAACGAGGCGGTGGATTTGGGCGACGGGACTGAGGGCTACAGCAGCAGCG
ACGAGGAGAGCGATGATGGCCTCCGCATCGTGCTGAACGAGGACACCAGC
GCGCCACTGCCGCCGCTCCCTGTGGGGCGCGGCGAGGGATGCGTGGATGA
GGATGAGGAGGGGGGTGATACGGGCAACCGTGTGAAGGGTTCATCTGTTA
ACGATGGCGGCTGGGCAACGGTTGGTGGGCTCCATTGCAAGGGACTTATT
GAGAAAACGCCATTACCTAGCATGGGGCAAATCGATCGAGGTCGCCAGCA
TGTGTTTCAGCGTGATTATAACTTTACCTTGCCAAGAAACGGCACAATTT
TCGACATAGGCATTGAAGCATTTCAACAGAAGCCTTGGAGACAGCAAGGG
GTGGATCTTACTGACTACTTCAATTTTAGTCTGGATGAAGAAGGCTGGAG
AAAATATTGGTGTAGCATGAAACAATTAAGGTTAGGGGCTAGATCACTTG
TAAATGAAACATCAGGATTGGAGCAGGAATCATACAAACTGAAATCTGTC
AAAGCAATGTCCAAGGTAGCAAATGATTCTGGATCTGAAGGAAGAAATGG
CCTTGGCAAGCCAAAAGGCAGAGCAATCCATGTTGAAGGCAGTGCGTGCG
AACGTGTTCCTTCAGCAGACTTGTGGCGTCCAATACAAAGGGATTCAGAT
GTTGTGATTCAAGTAAACATGACACTTTCGCCATCAAATCAGTCCACTTC
GGATGACAGCTCAAAGTTAAATCACAATGGTGTGGCTACTGAAAGGTATG
CATAG
protein sequence of Sh_002L05_p000020
>Sh_002L05_p000020 ID=Sh_002L05_p000020|Name=Sh_002L05_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=335bpback to top
MADSLDAAAAFAVSTNDNNVDDVEDLYADLDEQVAAALAAAGESGGSNAR
DSDPVTDGEGEVPEPDANEAVDLGDGTEGYSSSDEESDDGLRIVLNEDTS
APLPPLPVGRGEGCVDEDEEGGDTGNRVKGSSVNDGGWATVGGLHCKGLI
EKTPLPSMGQIDRGRQHVFQRDYNFTLPRNGTIFDIGIEAFQQKPWRQQG
VDLTDYFNFSLDEEGWRKYWCSMKQLRLGARSLVNETSGLEQESYKLKSV
KAMSKVANDSGSEGRNGLGKPKGRAIHVEGSACERVPSADLWRPIQRDSD
VVIQVNMTLSPSNQSTSDDSSKLNHNGVATERYA*
mRNA from alignment at Sh_002L05:16594..18693+
Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.>Sh_002L05_t000020 ID=Sh_002L05_t000020|Name=Sh_002L05_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=2100bp|location=Sequence derived from alignment at Sh_002L05:16594..18693+ (R570 Sugarcane cultivar)back to top
TGCCTCCGCAAGTTCTAGGGTTTTAGGCTTTAAGCAGCGGCGGTCCAAGG TTTTTGGGCGACCTTCGTCGGCGCGCCACCGATGGCTTAGCAGCTAGTAC ATCACCCGTGCTCCCTCTGCTGCTGCGCCGCTCCATGGCTGACTCATTGG ACGCGGCTGCCGCCTTCGCGGTATCCACCAACGACAACAATGTCGACGAC GTCGAGGACCTTTACGCGGACCTCGATGAACAGGTCGCCGCCGCGCTCGC CGCCGCCGGGGAGAGTGGCGGCTCAAACGCGAGGGATTCCGACCCGGTTA CCGACGGCGAGGGGGAGGTCCCAGAGCCCGACGCGAACGAGGCGGTGGAT TTGGGCGACGGGACTGAGGGCTACAGCAGCAGCGACGAGGAGAGCGATGA TGGCCTCCGCATCGTGCTGAACGAGGACACCAGCGCGCCACTGCCGCCGC TCCCTGTGGGGCGCGGCGAGGGATGCGTGGATGAGGATGAGGAGGGGGGT GATACGGGCAACCGTGTGAAGGGTTCATCTGTTAACGATGGCGGCTGGGC AACGGTATGATTCTTGAATTGGCTGAATTATTGGTTTTATTAAGATCCTT ATTGATGCTGTAGTGCGAAATTGGAGTATTAAGGTGCAGTTAATTCAGGG GAGGCTCTAGATACTCCGTTGCTGTGGCACATTGCATGTATTATGCGGGT TCCTGCCAATCATACGCAAACTTCTCGTGAGCTTCAAGTGGATTGGCTCT CTATTCCAATTTCCTCTGTGCTGAGACATGTAGCTCGAAGCTGCTGTGTT GCAGTTGTTTACTTAATGATGTATGCATACCTGAGCAAAACAATTTGGTT GAATGTATTGCAATGTGGTTTCCATCTAACTATGCAAGCCGCAGCACTAT TGGCTCACATATATTTTTGTTTAGACAATTCGAGCTCATATCTATATATA TATATATTTTTTTTGTTTGGACTGCGCTGTTCCAGGTTGGTGGGCTCCAT TGCAAGGGACTTATTGAGAAAACGCCATTACCTAGCATGGGGCAAATCGA TCGAGGTCGCCAGCATGTGTTTCAGCGTGATTATAACTTTACCTTGCCAA GAAACGGGTGAGCTTCCTTCTCGTACGAATGCAAAAACATGTAATTCATG TAGTTTTCATAGTGGTCTTCTCTGTTATTATAGGTGTCAAAAGAGAAAAA ATATTGTCCTTGACTACTATGCATAAATTGGCTTGCTTGTATGTATGCCT TCATGTCATAACTCATAAGTGTGATGCAGTAGCTTTAGTGCTGACCTTAA CACTGTGTTATGTTACTTTAGCACAATTTTCGACATAGGCATTGAAGCAT TTCAACAGAAGCCTTGGAGACAGCAAGGGGTGGATCTTACTGACTACTTC AATTTTAGTCTGGATGAAGAAGGCTGGAGAAAATATTGGTGTAGCATGGT ACTTTGGTCATGCTATTTCGTATCAGCATTTGTGTAGCAGTTTCTAAGCT GTCAAATGATAATTGAGTTAAGTACAACACTTCTTTTTGTGCAGAAACAA TTAAGGTTAGGGGCTAGATCACTTGTAAATGAAACATCAGGATTGGAGCA GGTAAGGCATAAACCTTGGATGCTTTCCATATTTCTTGTTAAGCAAAATC TTATGATCTCTGCGTTCAGGAATCATACAAACTGAAATCTGTCAAAGCAA TGTCCAAGGTAGCAAATGATTCTGGATCTGAAGGAAGAAATGGCCTTGGC AAGGTAATATGAAGTCTTGAATTAGCATATGTTCACGTGTAATCTATCAG AGCTAACTTGGTTTTGTAAATCTAGCCAAAAGGCAGAGCAATCCATGTTG AAGGCAGTGCGTGCGAACGTGTTCCTTCAGCAGACTTGTGGCGTCCAATA CAAAGGGATTCAGATGTTGTGATTCAAGTATGTTTCAGCAATGTCTTTTT TGTATGGTTGAGCAATATCTTCTGGCTGTATTCTAACAAGTTAATATGGT TGAGCAGGTAAACATGACACTTTCGCCATCAAATCAGTCCACTTCGGATG ACAGCTCAAAGTTAAATCACAATGGTGTGGCTACTGAAAGGTATGCATAG
Coding sequence (CDS) from alignment at Sh_002L05:16594..18693+
>Sh_002L05_t000020 ID=Sh_002L05_t000020|Name=Sh_002L05_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=1005bp|location=Sequence derived from alignment at Sh_002L05:16594..18693+ (R570 Sugarcane cultivar)back to top
ATGGCTGACTCATTGGACGCGGCTGCCGCCTTCGCGGTATCCACCAACGA
CAACAATGTCGACGACGTCGAGGACCTTTACGCGGACCTCGATGAACAGG
TCGCCGCCGCGCTCGCCGCCGCCGGGGAGAGTGGCGGCTCAAACGCGAGG
GATTCCGACCCGGTTACCGACGGCGAGGGGGAGGTCCCAGAGCCCGACGC
GAACGAGGCGGTGGATTTGGGCGACGGGACTGAGGGCTACAGCAGCAGCG
ACGAGGAGAGCGATGATGGCCTCCGCATCGTGCTGAACGAGGACACCAGC
GCGCCACTGCCGCCGCTCCCTGTGGGGCGCGGCGAGGGATGCGTGGATGA
GGATGAGGAGGGGGGTGATACGGGCAACCGTGTGAAGGGTTCATCTGTTA
ACGATGGCGGCTGGGCAACGGTTGGTGGGCTCCATTGCAAGGGACTTATT
GAGAAAACGCCATTACCTAGCATGGGGCAAATCGATCGAGGTCGCCAGCA
TGTGTTTCAGCGTGATTATAACTTTACCTTGCCAAGAAACGGCACAATTT
TCGACATAGGCATTGAAGCATTTCAACAGAAGCCTTGGAGACAGCAAGGG
GTGGATCTTACTGACTACTTCAATTTTAGTCTGGATGAAGAAGGCTGGAG
AAAATATTGGTGTAGCATGAAACAATTAAGGTTAGGGGCTAGATCACTTG
TAAATGAAACATCAGGATTGGAGCAGGAATCATACAAACTGAAATCTGTC
AAAGCAATGTCCAAGGTAGCAAATGATTCTGGATCTGAAGGAAGAAATGG
CCTTGGCAAGCCAAAAGGCAGAGCAATCCATGTTGAAGGCAGTGCGTGCG
AACGTGTTCCTTCAGCAGACTTGTGGCGTCCAATACAAAGGGATTCAGAT
GTTGTGATTCAAGTAAACATGACACTTTCGCCATCAAATCAGTCCACTTC
GGATGACAGCTCAAAGTTAAATCACAATGGTGTGGCTACTGAAAGGTATG
CATAG