Sh_002L05_t000040

Overview
NameSh_002L05_t000040
Unique NameSh_002L05_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1020
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_002L05contigSh_002L05:41489..42890
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_002L05_g000040Sh_002L05_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_002L05_p000040Sh_002L05_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_002L05_t000040 ID=Sh_002L05_t000040|Name=Sh_002L05_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1020bp
ATGCTGCCGGCAAGGGCCCTGACGCTGGAGACGTACCACCGTTTCTTCCT
CGACCCATGGAACACCCGCATCACCGTCGACCAACTCAACCAGGTACTGG
GACGCTGCGGCCAGGCCAAGATCATGGAGCGCCTGGTGGGGCAAGTGGAC
CTGCTGCCGCCGCGCCGCTCCACGCTGCACCGCGCGGCGCTGTCCGTCGC
GACGCCGCCTTCCGCGGCCGTCATCACCGCGGCGCAGGCTAGGGACGACG
TCGAGGCGATCGGGTGGGCCGAGTGCCCCATCGGCTGCGTCGCCGCGTTC
GCCGCGCCGAGTGCGGACGCGCCGGAGCCGGTGGAGCGCGTGCCTTGGCC
CGCCGACTTCGTCCTCACCGGGCGCCGCCCGCGGTCCAAGCGGACGCGCG
GCTCTGCGTATGGGCCAAGGGACGTCGCCGCCGCGTCCATGAAGTCGAAG
GCGGGCGCAGGCGCGCCACGGAAACAGGTGAAGGTTGTCGTCAAGGAGGA
GGAGAGGGAGCCGGAGCTGGTGCCACCGCCTCCTCCGCCACCGCTCTGGA
CGCGGTCTCCGACTCCACCTCCGCCTGCTTCGCCGCCTCCGCCACAGGAT
GTGGTGCCACCGCCGCCGCCGCCGCCTCCACCGTGCCAGCCTCAACCTAC
GTTGGCGCCGATCCCCTTGCCTCCAGGCTGGGGCACGCCGATGGGCCTGC
CGCATCCTTCGCAGCAGCTGTTCTTGGGGTCGCCTCTGCCCACACGGCCA
ACCGCTCAGCCGTGCCCTGCAACGCCACCACCGGGATGGAGCGTACCTAC
GCCGCCGCCGTCTTTCCCAGCACCGTTCTGGGGCGCGCCCGTAATGCTGC
CGCCATTGCCACCGCATGTGGCCTGGCGCTGGCCGCCCGGCACGGCGCCG
CACTGGGGCAGCATGTTGTCGCCAGAGCACCCGCCCATGCACCTGCAGCG
ATCACCACCTCCCCTGCTGCTGCAACACAGCCACCACCGCATTTTCAGGG
TCAGCCGCTGCCTGCGCTGA
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protein sequence of Sh_002L05_p000040

>Sh_002L05_p000040 ID=Sh_002L05_p000040|Name=Sh_002L05_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=340bp
MLPARALTLETYHRFFLDPWNTRITVDQLNQVLGRCGQAKIMERLVGQVD
LLPPRRSTLHRAALSVATPPSAAVITAAQARDDVEAIGWAECPIGCVAAF
AAPSADAPEPVERVPWPADFVLTGRRPRSKRTRGSAYGPRDVAAASMKSK
AGAGAPRKQVKVVVKEEEREPELVPPPPPPPLWTRSPTPPPPASPPPPQD
VVPPPPPPPPPCQPQPTLAPIPLPPGWGTPMGLPHPSQQLFLGSPLPTRP
TAQPCPATPPPGWSVPTPPPSFPAPFWGAPVMLPPLPPHVAWRWPPGTAP
HWGSMLSPEHPPMHLQRSPPPLLLQHSHHRIFRVSRCLR*
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mRNA from alignment at Sh_002L05:41489..42890-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_002L05_t000040 ID=Sh_002L05_t000040|Name=Sh_002L05_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1402bp|location=Sequence derived from alignment at Sh_002L05:41489..42890- (R570 Sugarcane cultivar)
ATGCTGCCGGCAAGGGCCCTGACGCTGGAGACGTACCACCGTTTCTTCCT CGACCCATGGAACACCCGCATCACCGTCGACCAACTCAACCAGGTACTGT ATGCACTAGTAGATTAGCAACTATCAGATCTCTCTTTTCTTTCACACCGC ACACACACACACATCCAGTTCTTCCTCCTATTTCTCTTCAATCTTCAGTG TTTCTGCAATGCATGTTGATTTTCAACGTCGTGCCATTTCCTCTTCCCTG AAACTTTGATCAGTCCTCCATCTCCTATGTCCCTATGTAATGTAACGCGT GGTGAGGGTTTCCTCTTCCTGCAGATCCTCTTCATGCATGGCTTCGCCAA GCTCCACCATGGCCAAAAGGTAAATCTGGCATCGCGAACTAACCAAACCT CCATTAAACCCCGTTTCCTCGTTGTTACGTTTCCCCCTCCACTGCTGTGT TCCTAACGCACATGGAGCTGTTCTTGCGAGGGGACGCTGCGGCCAGGCCA AGATCATGGAGCGCCTGGTGGGGCAAGTGGACCTGCTGCCGCCGCGCCGC TCCACGCTGCACCGCGCGGCGCTGTCCGTCGCGACGCCGCCTTCCGCGGC CGTCATCACCGCGGCGCAGGCTAGGGACGACGTCGAGGCGATCGGGTGGG CCGAGTGCCCCATCGGCTGCGTCGCCGCGTTCGCCGCGCCGAGTGCGGAC GCGCCGGAGCCGGTGGAGCGCGTGCCTTGGCCCGCCGACTTCGTCCTCAC CGGGCGCCGCCCGCGGTCCAAGCGGACGCGCGGCTCTGCGTATGGGCCAA GGGACGTCGCCGCCGCGTCCATGAAGTCGAAGGCGGGCGCAGGCGCGCCA CGGAAACAGGTGAAGGTTGTCGTCAAGGAGGAGGAGAGGGAGCCGGAGCT GGTGCCACCGCCTCCTCCGCCACCGCTCTGGACGCGGTCTCCGACTCCAC CTCCGCCTGCTTCGCCGCCTCCGCCACAGGATGTGGTGCCACCGCCGCCG CCGCCGCCTCCACCGTGCCAGCCTCAACCTACGTTGGCGCCGATCCCCTT GCCTCCAGGCTGGGGCACGCCGATGGGCCTGCCGCATCCTTCGCAGCAGC TGTTCTTGGGGTCGCCTCTGCCCACACGGCCAACCGCTCAGCCGTGCCCT GCAACGCCACCACCGGGATGGAGCGTACCTACGCCGCCGCCGTCTTTCCC AGCACCGTTCTGGGGCGCGCCCGTAATGCTGCCGCCATTGCCACCGCATG TGGCCTGGCGCTGGCCGCCCGGCACGGCGCCGCACTGGGGCAGCATGTTG TCGCCAGAGCACCCGCCCATGCACCTGCAGCGATCACCACCTCCCCTGCT GCTGCAACACAGCCACCACCGCATTTTCAGGGTCAGCCGCTGCCTGCGCT GA
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Coding sequence (CDS) from alignment at Sh_002L05:41489..42890-

>Sh_002L05_t000040 ID=Sh_002L05_t000040|Name=Sh_002L05_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=1020bp|location=Sequence derived from alignment at Sh_002L05:41489..42890- (R570 Sugarcane cultivar)
ATGCTGCCGGCAAGGGCCCTGACGCTGGAGACGTACCACCGTTTCTTCCT
CGACCCATGGAACACCCGCATCACCGTCGACCAACTCAACCAGGTACTGG
GACGCTGCGGCCAGGCCAAGATCATGGAGCGCCTGGTGGGGCAAGTGGAC
CTGCTGCCGCCGCGCCGCTCCACGCTGCACCGCGCGGCGCTGTCCGTCGC
GACGCCGCCTTCCGCGGCCGTCATCACCGCGGCGCAGGCTAGGGACGACG
TCGAGGCGATCGGGTGGGCCGAGTGCCCCATCGGCTGCGTCGCCGCGTTC
GCCGCGCCGAGTGCGGACGCGCCGGAGCCGGTGGAGCGCGTGCCTTGGCC
CGCCGACTTCGTCCTCACCGGGCGCCGCCCGCGGTCCAAGCGGACGCGCG
GCTCTGCGTATGGGCCAAGGGACGTCGCCGCCGCGTCCATGAAGTCGAAG
GCGGGCGCAGGCGCGCCACGGAAACAGGTGAAGGTTGTCGTCAAGGAGGA
GGAGAGGGAGCCGGAGCTGGTGCCACCGCCTCCTCCGCCACCGCTCTGGA
CGCGGTCTCCGACTCCACCTCCGCCTGCTTCGCCGCCTCCGCCACAGGAT
GTGGTGCCACCGCCGCCGCCGCCGCCTCCACCGTGCCAGCCTCAACCTAC
GTTGGCGCCGATCCCCTTGCCTCCAGGCTGGGGCACGCCGATGGGCCTGC
CGCATCCTTCGCAGCAGCTGTTCTTGGGGTCGCCTCTGCCCACACGGCCA
ACCGCTCAGCCGTGCCCTGCAACGCCACCACCGGGATGGAGCGTACCTAC
GCCGCCGCCGTCTTTCCCAGCACCGTTCTGGGGCGCGCCCGTAATGCTGC
CGCCATTGCCACCGCATGTGGCCTGGCGCTGGCCGCCCGGCACGGCGCCG
CACTGGGGCAGCATGTTGTCGCCAGAGCACCCGCCCATGCACCTGCAGCG
ATCACCACCTCCCCTGCTGCTGCAACACAGCCACCACCGCATTTTCAGGG
TCAGCCGCTGCCTGCGCTGA
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