Sh_004B11_t000020

Overview
NameSh_004B11_t000020
Unique NameSh_004B11_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004B11contigSh_004B11:32661..33859
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to N-hydroxycinnamoyl benzoyltransferase-like protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004B11_g000020Sh_004B11_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004B11_p000020Sh_004B11_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004B11_t000020 ID=Sh_004B11_t000020|Name=Sh_004B11_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1131bp
ATGCCGTCCCCGTCGCCGCAGCTGCGGGTGCTGTCCAGGCGCACCGTCAA
GCCGCCGCCGCGCCCGCGCCCGCGCCAACGCATCCCGCTCACCACCTGGG
ACGTCTCCTTTCTCTCCGCCGACTACATCCAGAAGGGCCTCCTCTACGCC
AAGCCGCCCTTCCCCACGGCCCGCCTCCTCGACCACCTCCAGGCCGCGCT
CGCCCAGGCGCTCCACGCCTACTACCCCGTCGCCGGCCGCTTCGCCACCG
ACCAGCACCGCGACGCCGACGGCAACGTCCTCGGCTGCTCCGTCTCCATC
GACTGTGACGGCCAGGGCGTCGACATCCTCCACGCCGTGGCCGACGGCGT
CGCCGTGGCCGACGTCGTCCCGCCCGACGCCGATGTTCCGCTCCTCGTCC
AGTCCCTCTTCCCCCTCGACGGCGCCGTCAACCACGACGGCCACCACCTC
CCGCTGTTCGTCGTCCAGGTCACCGACCTCACCGACGGCGTCTTCCTCGG
CTTCGCCTACAACCACGCGCTCTCCGACGGCACCGCCTTATGGAGATTCA
TCAACGTATGGGCGGGCATCGCGCGCGACAGCCTCTCTGTCTCCCCCTCG
GGGGCGGACGAGCACGAGCACTCTCTGCTAGCTCCGCCGCCCCTGCTGGA
GCGCTGGTCCCCCGACCGGCCTGACGACGCCGACGCCGCCGGTCGTGCTC
CCTTCTCGGGCCACACGCTGGAGGCGCTCAAGGACCGGGCGCGGGAGGAG
CTCCTCGCGGCCGGGGACGCGGCCGGCGCGGCGGCCGTCACCAAGTTCCA
GGCGCTCAGCTCGCTGGTGTGGCGCTGCGTCACCCGCGCGCGCCGCCTGC
CGCCCGACCAAACAACCTTTTGCCGCGCCGCCATCAACAACCGCACGCGC
CTCCGCCCGCAGCTGCCGCCGGAGTACTTCGGCAACACCATCTACGCCGT
CGCCACGGAGGCCGTCACCGCGGCGGATCTGCTGGCGCGCGGCCACGGCT
GGGGCGACGGCGGCCGTGGGCCGCGCGGTGGCGGCGCACACGGACGCCGA
CATCCGGGCGCGCGTCGCCGCGTGGATGACCACGCCCCGTCCTCTACAAC
CTCAGGTACTTCGACCCCAACGGCATCATGA
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protein sequence of Sh_004B11_p000020

>Sh_004B11_p000020 ID=Sh_004B11_p000020|Name=Sh_004B11_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=377bp
MPSPSPQLRVLSRRTVKPPPRPRPRQRIPLTTWDVSFLSADYIQKGLLYA
KPPFPTARLLDHLQAALAQALHAYYPVAGRFATDQHRDADGNVLGCSVSI
DCDGQGVDILHAVADGVAVADVVPPDADVPLLVQSLFPLDGAVNHDGHHL
PLFVVQVTDLTDGVFLGFAYNHALSDGTALWRFINVWAGIARDSLSVSPS
GADEHEHSLLAPPPLLERWSPDRPDDADAAGRAPFSGHTLEALKDRAREE
LLAAGDAAGAAAVTKFQALSSLVWRCVTRARRLPPDQTTFCRAAINNRTR
LRPQLPPEYFGNTIYAVATEAVTAADLLARGHGWGDGGRGPRGGGAHGRR
HPGARRRVDDHAPSSTTSGTSTPTAS*
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mRNA from alignment at Sh_004B11:32661..33859-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004B11_t000020 ID=Sh_004B11_t000020|Name=Sh_004B11_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1199bp|location=Sequence derived from alignment at Sh_004B11:32661..33859- (R570 Sugarcane cultivar)
ATGCCGTCCCCGTCGCCGCAGCTGCGGGTGCTGTCCAGGCGCACCGTCAA GCCGCCGCCGCGCCCGCGCCCGCGCCAACGCATCCCGCTCACCACCTGGG ACGTCTCCTTTCTCTCCGCCGACTACATCCAGAAGGGCCTCCTCTACGCC AAGCCGCCCTTCCCCACGGCCCGCCTCCTCGACCACCTCCAGGCCGCGCT CGCCCAGGCGCTCCACGCCTACTACCCCGTCGCCGGCCGCTTCGCCACCG ACCAGCACCGCGACGCCGACGGCAACGTCCTCGGCTGCTCCGTCTCCATC GACTGTGACGGCCAGGGCGTCGACATCCTCCACGCCGTGGCCGACGGCGT CGCCGTGGCCGACGTCGTCCCGCCCGACGCCGATGTTCCGCTCCTCGTCC AGTCCCTCTTCCCCCTCGACGGCGCCGTCAACCACGACGGCCACCACCTC CCGCTGTTCGTCGTCCAGGTCACCGACCTCACCGACGGCGTCTTCCTCGG CTTCGCCTACAACCACGCGCTCTCCGACGGCACCGCCTTATGGAGATTCA TCAACGTATGGGCGGGCATCGCGCGCGACAGCCTCTCTGTCTCCCCCTCG GGGGCGGACGAGCACGAGCACTCTCTGCTAGCTCCGCCGCCCCTGCTGGA GCGCTGGTCCCCCGACCGGCCTGACGACGCCGACGCCGCCGGTCGTGCTC CCGTTCCCCGACCTCACGGGGCGCATCGAGAGGCTCGCCCCCGCCGCCGC TGCGCGAGCGCATGCTGCAGTTCTCGGGCCACACGCTGGAGGCGCTCAAG GACCGGGCGCGGGAGGAGCTCCTCGCGGCCGGGGACGCGGCCGGCGCGGC GGCCGTCACCAAGTTCCAGGCGCTCAGCTCGCTGGTGTGGCGCTGCGTCA CCCGCGCGCGCCGCCTGCCGCCCGACCAAACAACCTTTTGCCGCGCCGCC ATCAACAACCGCACGCGCCTCCGCCCGCAGCTGCCGCCGGAGTACTTCGG CAACACCATCTACGCCGTCGCCACGGAGGCCGTCACCGCGGCGGATCTGC TGGCGCGCGGCCACGGCTGGGGCGACGGCGGCCGTGGGCCGCGCGGTGGC GGCGCACACGGACGCCGACATCCGGGCGCGCGTCGCCGCGTGGATGACCA CGCCCCGTCCTCTACAACCTCAGGTACTTCGACCCCAACGGCATCATGA
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Coding sequence (CDS) from alignment at Sh_004B11:32661..33859-

>Sh_004B11_t000020 ID=Sh_004B11_t000020|Name=Sh_004B11_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=1131bp|location=Sequence derived from alignment at Sh_004B11:32661..33859- (R570 Sugarcane cultivar)
ATGCCGTCCCCGTCGCCGCAGCTGCGGGTGCTGTCCAGGCGCACCGTCAA
GCCGCCGCCGCGCCCGCGCCCGCGCCAACGCATCCCGCTCACCACCTGGG
ACGTCTCCTTTCTCTCCGCCGACTACATCCAGAAGGGCCTCCTCTACGCC
AAGCCGCCCTTCCCCACGGCCCGCCTCCTCGACCACCTCCAGGCCGCGCT
CGCCCAGGCGCTCCACGCCTACTACCCCGTCGCCGGCCGCTTCGCCACCG
ACCAGCACCGCGACGCCGACGGCAACGTCCTCGGCTGCTCCGTCTCCATC
GACTGTGACGGCCAGGGCGTCGACATCCTCCACGCCGTGGCCGACGGCGT
CGCCGTGGCCGACGTCGTCCCGCCCGACGCCGATGTTCCGCTCCTCGTCC
AGTCCCTCTTCCCCCTCGACGGCGCCGTCAACCACGACGGCCACCACCTC
CCGCTGTTCGTCGTCCAGGTCACCGACCTCACCGACGGCGTCTTCCTCGG
CTTCGCCTACAACCACGCGCTCTCCGACGGCACCGCCTTATGGAGATTCA
TCAACGTATGGGCGGGCATCGCGCGCGACAGCCTCTCTGTCTCCCCCTCG
GGGGCGGACGAGCACGAGCACTCTCTGCTAGCTCCGCCGCCCCTGCTGGA
GCGCTGGTCCCCCGACCGGCCTGACGACGCCGACGCCGCCGGTCGTGCTC
CCTTCTCGGGCCACACGCTGGAGGCGCTCAAGGACCGGGCGCGGGAGGAG
CTCCTCGCGGCCGGGGACGCGGCCGGCGCGGCGGCCGTCACCAAGTTCCA
GGCGCTCAGCTCGCTGGTGTGGCGCTGCGTCACCCGCGCGCGCCGCCTGC
CGCCCGACCAAACAACCTTTTGCCGCGCCGCCATCAACAACCGCACGCGC
CTCCGCCCGCAGCTGCCGCCGGAGTACTTCGGCAACACCATCTACGCCGT
CGCCACGGAGGCCGTCACCGCGGCGGATCTGCTGGCGCGCGGCCACGGCT
GGGGCGACGGCGGCCGTGGGCCGCGCGGTGGCGGCGCACACGGACGCCGA
CATCCGGGCGCGCGTCGCCGCGTGGATGACCACGCCCCGTCCTCTACAAC
CTCAGGTACTTCGACCCCAACGGCATCATGA
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