Sh_004B11_t000030

Overview
NameSh_004B11_t000030
Unique NameSh_004B11_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1011
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004B11contigSh_004B11:37841..39058
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteZinc finger protein CONSTANS-LIKE 12
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004B11_g000030Sh_004B11_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004B11_p000030Sh_004B11_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004B11_t000030 ID=Sh_004B11_t000030|Name=Sh_004B11_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=1011bp
ATGACTCGCGCCACCTGCTTAACCGCCATGCCCATCACCATCACCATCAC
CATCACTTGCTCCCTCCACCACTGGTCCGGTCCACCGCCGCCTCCCTCGT
CTCGTCCGCGCCGCGCATGGCCCTGCCACTCTACGGCTGCAGGTCCTGCG
CTGTGCATGACGCCATCGTCTTCTGCCTCTGCTGCGTCGCCAGGCTGTGC
CTGCACTGCGACGCCGCCGTGCACAGGGGCCACCGCGGCGGCGGCGCTCC
ACCCGCGCGCCCCGCTCTGCGACGCGTGCGGCGACGCGCCCGGCGCGCTG
CGCTGCGACGGCACCGTGACGCTCTGCGCCGTGTGCGCCGGCCGCGGCGC
TCCCGGCTTCACCCGCACCGGCGTCGCTACGTACACCGGCTGCCCCGGCC
CAGCCGAGATGGCGCGCCTCATCTCCGTGGACCCGCCGCAGCCGCAGCAG
GACTTCGAGGCGTGGCTCGCCGACAAGCTGCCGCGTCTCCTGGAGGACGA
CGAGCAGGATCATCAGCTCCCGCCAGATTGGGATGTGGCAGACAGCTGCT
ACACTCAGCCTGAGGTAGTCTCTTATCCTCGTCGCCGGCGGGCGTACTGT
CAGCAGCAGCAGCATCAAGCAGCAGTGTCTGCTGTGCAGCCGTCTTGGCA
GAGCAACAATGACGCCGGCTTCCCTTTCTGTGGCGGGGTGTTTTCGGAGA
GGGCAGATTTCATGCAGGCTGCCCAGCCACGGCAGATGACGACAGGCGCA
GACCATGACAAGATGCTGCAGGATGCAAGCGCCATGGCCAAGAAGCGAGA
GGAGAGGGAGAGGGCCAAACAAAGATATAACGAGAAGAAAAAGAACAGAA
GGTTCTGCAAGCAGATCATGTATGCTTCTCGCAAGGCCAGAGCAGACACA
AGAAAGCGAGTCAAAGGCCGTTTTGCAAAGGCTCAGCATGATGATGATCC
CCAGATTCATGACGGCCCATCAACATCTACAGCTACAGTGAAGAGGGAGA
CAAGCAGCTGA
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protein sequence of Sh_004B11_p000030

>Sh_004B11_p000030 ID=Sh_004B11_p000030|Name=Sh_004B11_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=337bp
MTRATCLTAMPITITITITCSLHHWSGPPPPPSSRPRRAWPCHSTAAGPA
LCMTPSSSASAASPGCACTATPPCTGATAAAALHPRAPLCDACGDAPGAL
RCDGTVTLCAVCAGRGAPGFTRTGVATYTGCPGPAEMARLISVDPPQPQQ
DFEAWLADKLPRLLEDDEQDHQLPPDWDVADSCYTQPEVVSYPRRRRAYC
QQQQHQAAVSAVQPSWQSNNDAGFPFCGGVFSERADFMQAAQPRQMTTGA
DHDKMLQDASAMAKKREERERAKQRYNEKKKNRRFCKQIMYASRKARADT
RKRVKGRFAKAQHDDDPQIHDGPSTSTATVKRETSS*
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mRNA from alignment at Sh_004B11:37841..39058-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004B11_t000030 ID=Sh_004B11_t000030|Name=Sh_004B11_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=1218bp|location=Sequence derived from alignment at Sh_004B11:37841..39058- (R570 Sugarcane cultivar)
ATGACTCGCGCCACCTGCTTAACCGCCATGCCCATCACCATCACCATCAC CATCACTTGCTCCCTCCACCACTGGTCCGGTCCACCGCCGCCTCCCTCGT CTCGTCCGCGCCGCGCATGGCCCTGCCACTCTACGGCTGCAGGTCCTGCG CTGTGCATGACGCCATCGTCTTCTGCCTCTGCTGCGTCGCCAGGCTGTGC CTGCACTGCGACGCCGCCGTGCACAGGGGCCACCGCGGCGGCGGCGCTCC ACCCGCGCGCCCCGCTCTGCGACGCGTGCGGCGACGCGCCCGGCGCGCTG CGCTGCGACGGCACCGTGACGCTCTGCGCCGTGTGCGCCGGCCGCGGCGC TCCCGGCTTCACCCGCACCGGCGTCGCTACGTACACCGGCTGCCCCGGCC CAGCCGAGATGGCGCGCCTCATCTCCGTGGACCCGCCGCAGCCGCAGCAG GACTTCGAGGCGTGGCTCGCCGACAAGCTGCCGCGTCTCCTGGAGGACGA CGAGCAGGATCATCAGCTCCCGCCAGATTGGGATGTGGCAGACAGCTGCT ACACTCAGCCTGAGGTAGTGTACGTACGTTATTGTATTATATAAGTCAAC TGATCGAACGCATTGTGAATTGTTGAGGCACTGACTGACTGACTGAATGA TGAATGGGTTGTCAAAAATAAAATGATTCGTAGTCATCATCCTCTTATGG CAATGGCAACCAGCTCTTATCCTCGTCGCCGGCGGGCGTACTGTCAGCAG CAGCAGCATCAAGCAGCAGTGTCTGCTGTGCAGCCGTCTTGGCAGAGCAA CAATGACGCCGGCTTCCCTTTCTGTGGCGGGGTGTTTTCGGAGAGGGCAG ATTTCATGCAGGCTGCCCAGCCACGGCAGATGACGACAGGCGCAGACCAT GACAAGATGCTGCAGGATGCAAGCGCCATGGCCAAGAAGCGAGAGGAGAG GGAGAGGGCCAAACAAAGATATAACGAGAAGAAAAAGAACAGAAGGTAGG CTCTGAACAACTTCTGAATTATATCTCATCGATCGTTCATCTAATGCGTG CGTTGCAGGTTCTGCAAGCAGATCATGTATGCTTCTCGCAAGGCCAGAGC AGACACAAGAAAGCGAGTCAAAGGCCGTTTTGCAAAGGCTCAGCATGATG ATGATCCCCAGATTCATGACGGCCCATCAACATCTACAGCTACAGTGAAG AGGGAGACAAGCAGCTGA
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Coding sequence (CDS) from alignment at Sh_004B11:37841..39058-

>Sh_004B11_t000030 ID=Sh_004B11_t000030|Name=Sh_004B11_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=1011bp|location=Sequence derived from alignment at Sh_004B11:37841..39058- (R570 Sugarcane cultivar)
ATGACTCGCGCCACCTGCTTAACCGCCATGCCCATCACCATCACCATCAC
CATCACTTGCTCCCTCCACCACTGGTCCGGTCCACCGCCGCCTCCCTCGT
CTCGTCCGCGCCGCGCATGGCCCTGCCACTCTACGGCTGCAGGTCCTGCG
CTGTGCATGACGCCATCGTCTTCTGCCTCTGCTGCGTCGCCAGGCTGTGC
CTGCACTGCGACGCCGCCGTGCACAGGGGCCACCGCGGCGGCGGCGCTCC
ACCCGCGCGCCCCGCTCTGCGACGCGTGCGGCGACGCGCCCGGCGCGCTG
CGCTGCGACGGCACCGTGACGCTCTGCGCCGTGTGCGCCGGCCGCGGCGC
TCCCGGCTTCACCCGCACCGGCGTCGCTACGTACACCGGCTGCCCCGGCC
CAGCCGAGATGGCGCGCCTCATCTCCGTGGACCCGCCGCAGCCGCAGCAG
GACTTCGAGGCGTGGCTCGCCGACAAGCTGCCGCGTCTCCTGGAGGACGA
CGAGCAGGATCATCAGCTCCCGCCAGATTGGGATGTGGCAGACAGCTGCT
ACACTCAGCCTGAGGTAGTCTCTTATCCTCGTCGCCGGCGGGCGTACTGT
CAGCAGCAGCAGCATCAAGCAGCAGTGTCTGCTGTGCAGCCGTCTTGGCA
GAGCAACAATGACGCCGGCTTCCCTTTCTGTGGCGGGGTGTTTTCGGAGA
GGGCAGATTTCATGCAGGCTGCCCAGCCACGGCAGATGACGACAGGCGCA
GACCATGACAAGATGCTGCAGGATGCAAGCGCCATGGCCAAGAAGCGAGA
GGAGAGGGAGAGGGCCAAACAAAGATATAACGAGAAGAAAAAGAACAGAA
GGTTCTGCAAGCAGATCATGTATGCTTCTCGCAAGGCCAGAGCAGACACA
AGAAAGCGAGTCAAAGGCCGTTTTGCAAAGGCTCAGCATGATGATGATCC
CCAGATTCATGACGGCCCATCAACATCTACAGCTACAGTGAAGAGGGAGA
CAAGCAGCTGA
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