Sh_004B11_t000050

Overview
NameSh_004B11_t000050
Unique NameSh_004B11_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1020
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004B11contigSh_004B11:44700..46649
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004B11_g000050Sh_004B11_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004B11_p000050Sh_004B11_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004B11_t000050 ID=Sh_004B11_t000050|Name=Sh_004B11_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1020bp
ATGAGGCCTCCAGTGTTGGACCCCTCAGCATCATCAATTGCCCTGACATC
AGCTTGTCGACCACCAGTGCCGAGGCCTAGGGTCCAAGCACCACAGGTGG
ACCAACCATCATCGTCACTGTCACAGTTGTCCCGTCCATCATTGCCGTCT
TTGCAAGTGGTCCAACCTCCCAACTTGGAACAAGGCAATCTTTTCAGAGC
AACGTCAACGACTCTTAGTCACATGCCACCTCCACGTGGGAGCTATGGAG
TTCAGAGTGAATTAGCTCCTCGCTCACCTGCTCCTCATCTCCAGTTCAGG
TTGCCACGGGCACATTCCATGCCACCTGGAAATCAGCAGCAACTGCCAAC
TAGGGTGGAGGCAATGTCCTCAAGGACACAACCAGTGCTGGCAGCAAGCT
CATGCCCATCAGATATACATGCAGGACAGCTGGCAGCCTCAGCCATGTCA
AGTTTACACACTGTCCTCCCTTCAACCTCATTGCCCTCAAGCTTGCATCC
TAGTCACCTGGCACAACGTGTGCCACCAACTCCGAACCCAACTTTACAAG
CGGCGGCACCATCAGGCTCGAATACAACAATGCCTTCCATCCCTACAGGC
ATGCAGCCGCCAGATTCTGGGTCACTATCGCTGGATGCATGGCTTACAGC
TAATCTTGGGTTGAGTGATGATGCGTCTACAGCTCCTACTAAGAATACAG
CCAGTCTTGGGTTGAGCAGTGATGCACCTAGGGCAGCTCCTGCTACAAAT
ACGGCCAGTCTTGGGTTGAGCAGTAATGTGCCTAGGGGGATGGCTCCTGC
TACAAATGAAGCCAGTCTTGGGTTGAGCAGTGATGTACCTAGGGGGATGG
CTCCTGCTACAAATACAGCCAGTCTTAGGTTGAGCAGTGATTCACCTAGG
GCGACGGTTCCTGCTACAAGTACAACCAGTCTTAGGTTGAGCAGTGATTC
GCCTGGGGCGACAGCTCCTGCTACAAATGGTCCTGAGATAGATGTGGTAT
GCTTGTCTGATGATGAATGA
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protein sequence of Sh_004B11_p000050

>Sh_004B11_p000050 ID=Sh_004B11_p000050|Name=Sh_004B11_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=340bp
MRPPVLDPSASSIALTSACRPPVPRPRVQAPQVDQPSSSLSQLSRPSLPS
LQVVQPPNLEQGNLFRATSTTLSHMPPPRGSYGVQSELAPRSPAPHLQFR
LPRAHSMPPGNQQQLPTRVEAMSSRTQPVLAASSCPSDIHAGQLAASAMS
SLHTVLPSTSLPSSLHPSHLAQRVPPTPNPTLQAAAPSGSNTTMPSIPTG
MQPPDSGSLSLDAWLTANLGLSDDASTAPTKNTASLGLSSDAPRAAPATN
TASLGLSSNVPRGMAPATNEASLGLSSDVPRGMAPATNTASLRLSSDSPR
ATVPATSTTSLRLSSDSPGATAPATNGPEIDVVCLSDDE*
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mRNA from alignment at Sh_004B11:44700..46649-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004B11_t000050 ID=Sh_004B11_t000050|Name=Sh_004B11_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1950bp|location=Sequence derived from alignment at Sh_004B11:44700..46649- (R570 Sugarcane cultivar)
GTCTGCAGCACAAGGTATGGAGAGCATGTACATTCATTGTCCCTTCCAAA TTAATGTTTTCAACATGATTAGTGTTTGGTATGAAATATTGTGATAAGTT CTATTTCATTGCAACTTCCCCTTTCTGTGAGATTTACACCCAAAGGCGCA GGATCTTCTAAACGCAATTAAAATGCACAAATGCCAAGTTCTATGCAATG CTTGACTAGTTGCTAAACATCCTGAGTATGGATGGACTGAAAGAAGGAAC AAGACGGGATCAAAGATTTATTAATATAAACTATTTCTTAGAACTTTCAT TACTCATTAATGACTATTTATTTCTTTCGTTCAGGTGCAGCAAAAGTCCA TACCCCTCCAGTTCGTCACACACCTCAGGCTACGCCACAAGTGATGAGGC CTCCAGTGTTGGACCCCTCAGCATCATCAATTGCCCTGACATCAGCTTGT CGACCACCAGTGCCGAGGCCTAGGGTCCAAGCACCACAGGTGGACCAACC ATCATCGTCACTGTCACAGTTGTCCCGTCCATCATTGCCGTCTTTGCAAG TGGTCCAACCTCCCAACTTGGAACAAGGCAATCTTTTCAGAGCAACGTCA ACGACTCTTAGTCACATGCCACCTCCACGTGGGAGCTATGGAGTTCAGAG TGAATTAGCTCCTCGCTCACCTGCTCCTCATCTCCAGTTCAGGTTGCCAC GGGCACATTCCATGCCACCTGGAAATCAGCAGCAACTGCCAACTAGGGTG GAGGCAATGTCCTCAAGGACACAACCAGTGCTGGCAGCAAGCTCATGCCC ATCAGATATACATGCAGGACAGCTGGCAGCCTCAGCCATGTCAAGTTTAC ACACTGTCCTCCCTTCAACCTCATTGCCCTCAAGCTTGCATCCTAGTCAC CTGGCACAACGTGTGCCACCAACTCCGAACCCAACTTTACAAGCGGCGGC ACCATCAGGCTCGAATACAACAATGCCTTCCATCCCTACAGGCATGCAGC CGCCAGATTCTGGGTCACTATCGCTGGATGCATGGCTTACAGCTAATCTT GGGTTGAGTGATGATGCGTCTACAGCTCCTACTAAGAATACAGCCAGTCT TGGGTTGAGCAGTGATGCACCTAGGGCAGCTCCTGCTACAAATACGGCCA GTCTTGGGTTGAGCAGTAATGTGCCTAGGGGGATGGCTCCTGCTACAAAT GAAGCCAGTCTTGGGTTGAGCAGTGATGTACCTAGGGGGATGGCTCCTGC TACAAATACAGCCAGTCTTAGGTTGAGCAGTGATTCACCTAGGGCGACGG TTCCTGCTACAAGTACAACCAGTCTTAGGTTGAGCAGTGATTCGCCTGGG GCGACAGCTCCTGCTACAAATGGTCCTGAGATAGATGTGGTATGCTTGTC TGATGATGAATGAGACTAGCAGGTGTACAATGCTGACAGTTAGAGATGAC TGCTTGAAAAGAGTAGGGTGACCGAAGGCCTTTTTTTAAGGCTCCCTTGA GCTGTCGTTCGGGCAAGGTAGGAATGTTGTTTGTGCTGTGAATGGCTGGT AACAGCAATGCCAGTTTTATTTAATTCACTGTAAATTGGTATCATGACAA ATGTCAGCCAACGGTTGCTGTAAATCGCTAACCTCCGGGGAACATATGTG GAGATTAACCTCTGAGATAGACTTGGGTTTCAAGCGCTATGAGGTTGCTG TACATGTTTGTCATTGATTAGGGATGCATAGACTTGGGTTTCAAGCGCTA TGAGGTTGCTGTACATGTTTGTCATTGATTAGGGATGCATATCCATAACT CGCTGAGGTGTTGGTTGCATGCTGGAATGTTTGTTTGTGCATAATGAAGA GAGCAGAGAATCGTAAAAAATCGTTCTAGTAGCATATGCAACAGAGAAAT TTAGGCCAAGGCGGTCACTTCAACTTTATATTGCATTTCCTTTTTTTAAT
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Coding sequence (CDS) from alignment at Sh_004B11:44700..46649-

>Sh_004B11_t000050 ID=Sh_004B11_t000050|Name=Sh_004B11_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=1020bp|location=Sequence derived from alignment at Sh_004B11:44700..46649- (R570 Sugarcane cultivar)
ATGAGGCCTCCAGTGTTGGACCCCTCAGCATCATCAATTGCCCTGACATC
AGCTTGTCGACCACCAGTGCCGAGGCCTAGGGTCCAAGCACCACAGGTGG
ACCAACCATCATCGTCACTGTCACAGTTGTCCCGTCCATCATTGCCGTCT
TTGCAAGTGGTCCAACCTCCCAACTTGGAACAAGGCAATCTTTTCAGAGC
AACGTCAACGACTCTTAGTCACATGCCACCTCCACGTGGGAGCTATGGAG
TTCAGAGTGAATTAGCTCCTCGCTCACCTGCTCCTCATCTCCAGTTCAGG
TTGCCACGGGCACATTCCATGCCACCTGGAAATCAGCAGCAACTGCCAAC
TAGGGTGGAGGCAATGTCCTCAAGGACACAACCAGTGCTGGCAGCAAGCT
CATGCCCATCAGATATACATGCAGGACAGCTGGCAGCCTCAGCCATGTCA
AGTTTACACACTGTCCTCCCTTCAACCTCATTGCCCTCAAGCTTGCATCC
TAGTCACCTGGCACAACGTGTGCCACCAACTCCGAACCCAACTTTACAAG
CGGCGGCACCATCAGGCTCGAATACAACAATGCCTTCCATCCCTACAGGC
ATGCAGCCGCCAGATTCTGGGTCACTATCGCTGGATGCATGGCTTACAGC
TAATCTTGGGTTGAGTGATGATGCGTCTACAGCTCCTACTAAGAATACAG
CCAGTCTTGGGTTGAGCAGTGATGCACCTAGGGCAGCTCCTGCTACAAAT
ACGGCCAGTCTTGGGTTGAGCAGTAATGTGCCTAGGGGGATGGCTCCTGC
TACAAATGAAGCCAGTCTTGGGTTGAGCAGTGATGTACCTAGGGGGATGG
CTCCTGCTACAAATACAGCCAGTCTTAGGTTGAGCAGTGATTCACCTAGG
GCGACGGTTCCTGCTACAAGTACAACCAGTCTTAGGTTGAGCAGTGATTC
GCCTGGGGCGACAGCTCCTGCTACAAATGGTCCTGAGATAGATGTGGTAT
GCTTGTCTGATGATGAATGA
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