Sh_004B11_t000090

Overview
NameSh_004B11_t000090
Unique NameSh_004B11_t000090
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004B11contigSh_004B11:85957..89475
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004B11_g000090Sh_004B11_g000090R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004B11_p000090Sh_004B11_p000090R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004B11_t000090 ID=Sh_004B11_t000090|Name=Sh_004B11_t000090|organism=R570 Sugarcane cultivar|type=mRNA|length=465bp
ATGGTTCTGCTCTATGGTTGGTACTTTTGGTGGCTTCATGTTGAAAAGGT
TCTGAGCTTCCACGCAAGGGACAGCGCTGCAGCCACAACAGCCTCAAAGG
GAGGGCGGCAACAGCAACAGCAACAGAAGCAGCAGCAGGTGGCGATCGAC
GAGATAAGCTGCAGCTCGGGCAAGCTGAGCTTCAAGTGGGACGTGGGCAG
CTGCTCCTCATCATCGTCAGTTGCGTATTCGCCGCTGTCATTGATGTCAG
CGCCAGCAAAGGCCTCGGAGCAGACGCTGCTGACGCCGTTGAGGAAAGAC
TACTGCATGTCAAGGCTGTCATCCATGAGCCAGCAGAGTATGTTGTACGG
CGGCGGCAGCCCAAAGAGCTTGAAGAACATGGAAGGAGAGGAGGAGGCGG
CCTGCAGCTGCAGGACGGCGCAGTGGATCACCACCGATTCAGACTTTGTA
GTGTTGGAGCTGTAA
back to top

protein sequence of Sh_004B11_p000090

>Sh_004B11_p000090 ID=Sh_004B11_p000090|Name=Sh_004B11_p000090|organism=R570 Sugarcane cultivar|type=polypeptide|length=155bp
MVLLYGWYFWWLHVEKVLSFHARDSAAATTASKGGRQQQQQQKQQQVAID
EISCSSGKLSFKWDVGSCSSSSSVAYSPLSLMSAPAKASEQTLLTPLRKD
YCMSRLSSMSQQSMLYGGGSPKSLKNMEGEEEAACSCRTAQWITTDSDFV
VLEL*
back to top

mRNA from alignment at Sh_004B11:85957..89475-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004B11_t000090 ID=Sh_004B11_t000090|Name=Sh_004B11_t000090|organism=R570 Sugarcane cultivar|type=mRNA|length=3519bp|location=Sequence derived from alignment at Sh_004B11:85957..89475- (R570 Sugarcane cultivar)
TTTCAGTAAGTTTAAGAGAAAGGAAACCATAAAGTTGCTTCATGGTTCTG CTCTATGGTTGGTACTTTTGGTGGCTTCATGTTGAAGTAAGTTTGCTCTC AGCAAATTGTTACTGAATTTTAGAAATTATTTTAATTGTTTTGTGAAAGT TTCAAGGTTCATTACAAGGCTTAATCTAGCTTGGTTTCCTTAGGGGCTCA CATCATTCTGCAATTATCAGAATACCTGTTTTGTTGGAAAAATTGATCCT GTTTCCCATTTTCTAATTGATTTATAGATCAGATAAGGTTGAGTTAAGAT GATATCCCTTGTTATCTCTCTCCTTTGGTCATTTATTCCATCCTTATGTG AATGTCGGCTCTAAAATTCTTTTATGCCATGGGAATATGGCATTTAACCA ACCAGGAACCTGTTACCGTAGCTGTTGATGTTACTCTGTACTTGAGGGAA CCAAACAAATTTGGATGATGTCGCTGCATATGTCTAAACGCTAAATTTGT TTTGCAATCAGAGGTTTCCAAAAGTTCTTGGAAATTAGGACGGCCTTGCT GGAAGAATAAAAGTGAAGAATCCAGTAACACAAATCACATTGTTGCACTT GTTTTATGGTTCTGATTTCCATGTCACTAGACCACATAAAAGTTCAGATG TGAAATGGAAAACCAGATGACAAACCAAGTAGACTAGATGATTATGCAGC ACGTGGATCACATCACTTTGTTGGTAGCTACTTCCATGATCTTGTTATTC TGGAACAAACTACAAACACAAACACTGTGTCACTATTTTGATATGAAAAT GACAAGGGAAGGGGCATAAATAATATTTTAATAGCCAAGCTGAGTCCACC GCACCGCATCACTACATTGTGGTATGCCGAATACACAGCACGTTGGTACC ATAACTAGATGTCGAGAAAATGTTGTTCACAAATTCTGGTCGTTTTGGAT CACATCAGTCATGTCTTGGTATCTTTTTTCCATTTGGGGGACTTCTGGTG CTCTATCGTGGACAGTGAGATTACAGTACATTGCCGAGCATAATGTCGCT TATGTGAGGACAGGTGTCCCCCATGCTGCAGATCTTCTGCAATTCTGGCT AACTCTAGCAGAAAACCATTTCCACAACCTGAACTATATGTAATAGATTC ATGTGTAGCTAACATTAATGTGCCAGATTGCCTCAGCCCATGAGCCACCG TGTTTCTCTGGTGAGAAACTGTCCAGGATATGCATTGGTTGGCAATGCAA TTCTTATTCAACTGAAATGTCTGAAACATTTTATTTCGAGAGCTGCTCCT TTTCCGTTTCTTGGGTGAAGTTTGGGCTATGCTTTTGGTGACATTATGTA ATTTTAATGTTAAAAAGTACTTTTAATGTTTTAACAAGTCAGTCTAGCCG CCGCTATTTGCAACACAAGCTATAGACTCCAGTGTATCTCTTGTTACTAT ATATATAACATACAGCTGTAGTTGTAGCCTTGAGATAAAATAGCTGGTGA GACAAGAGGTACAGAAGTATACCATTAAAAAAAGAAGGCTTCTCCTACAG TATGTCAGTACACAGTAACATGCCGTAGCCCAGGGACACCGTTCGTTTGC ATGCATCACATGGCCAACCTAAGCAGCGCAAAGGACAGCGTTCCAACTTA TCAATCATGCCCATATCATTTGCTTGCTTAATCTTTCTCATCTCATGTGT CTTTGCCCCCTTTGCATCAATAATCAACACTGCATCTAGCTAGTGTGATG ACACAGCTTCTATCTAATCCTTTCACTTAAACTGCTAAACAAATAGGCAA GTTGGTTGAGGAGATCTAAAATGCAGCTGGCCTTGTAGTAGTAGCGTTCG ACTTTGACCGCAACTGCACGCACCTAATCAAGATTCTTATACTTGTTACA ACCAGAACATCCATTGTGATATTATTCTATCTCCACATGTGATGTTTAAC TAAGGCAAATTCCAGCTTAGCTTGTTGGCGTTGCCCACCATGTTGCTACA ATCATATGATAGATGATACCGATTCATCTCTTGGGATCCCCATGTCTGAT ATGATCCCGAGCGTTGGTTAATCCCCGCTAGTTTGATCTCAACCGTTGAT TGCCTAACCAAACGACCTGCCTATGCTTGTAACAAATCCTTATAAAGACT GCCCATACGCAGGGGATGCAATGAAAGTGAGGTGTCTGGGGTTGCAGCAA CAAGCCTCTGCCCTGAGGTGGCATTAGGATGGGGCACATTGCTGAGCCTA CCGGCACTGTGGTGATTGGCTGCAAAGTGCTGCCGATCTTCAACGAGCAT GGCATTGTTGACAGTGCAATGAAGAAGATGGTGCATAGGATTGATGGCAA GAAGGCAGTTGCGCGGGTTAAGGAGCTTCTGAAACGGGCTGCCCAGGCCA GGCCTCACAGCGCCACTGTCAGTGGAAAGAAATGGAAGGTATATATATAT ATATATACATGTGGTCCTTTGATCTTACTTCTGCCCCCTTTCATAGGTTA ATAGTAGTTTGTTTAGCTGTATAGCACACACCCTGGACTCAGTTTAGGAA CTAAATCAAGATTCGAAGATTTTGATGTAGCAAATACATAAATGTTTATA TGTTGGAATCAAATGTGTTTTTGCAGAAGGTTCTGAGCTTCCACGCAAGG GACAGCGCTGCAGCCACAACAGCCTCAAAGGGAGGGCGGCAACAGCAACA GCAACAGAAGCAGCAGCAGGTGGCGATCGACGAGATAAGCTGCAGCTCGG GCAAGCTGAGCTTCAAGTGGGACGTGGGCAGCTGCTCCTCATCATCGTCA GTTGCGTATTCGCCGCTGTCATTGATGTCAGCGCCAGCAAAGGCCTCGGA GCAGACGCTGCTGACGCCGTTGAGGAAAGACTACTGCATGTCAAGGCTGT CATCCATGAGCCAGCAGAGTATGTTGTACGGCGGCGGCAGCCCAAAGAGC TTGAAGAACATGGAAGGAGAGGAGGAGGCGGCCTGCAGCTGCAGGACGGC GCAGTGGATCACCACCGATTCAGACTGTGAGTTGTGTCTGCATTGTTTAT TTGTTTATGTAGCTGAACATGTGATAAGCACTACTGGCACCTCACTGCTT CTCGATTTGCTTGCAGTTGTAGTGTTGGAGCTGTAAGCTAATGCTCATGA AGACATCAATTAAGCAAGATGTGAGCAGAGACGCACATTTGGTTGCTTAG TTCAGCAGCAGCAAGCATCTGGCTTTTCTGCTTTCCTGATTCCGAAGAAG GAAAGGAAGGAAGGATCGATGGATCGATTCAACGGCGGGCAGTGCGGTGC TGAATCCTTTTGTTTTGCTGCTCCATTTCCCAATGTGTCGTCTAGTACTG TACTCAGCTAATCTAGTTACCTTGCCAATTAGTTGAGGAAGGAATGCAAC ATAATAACCTGGCCGGCTCTATCCTGTTCATTCTGACTGACGGATACTTC AGCAGTACTTTTCAGCGAACGAATAGTGTTTTCCTCTCAAAATAAATGAG CGTAAACATCAGTATAAGC
back to top

Coding sequence (CDS) from alignment at Sh_004B11:85957..89475-

>Sh_004B11_t000090 ID=Sh_004B11_t000090|Name=Sh_004B11_t000090|organism=R570 Sugarcane cultivar|type=CDS|length=465bp|location=Sequence derived from alignment at Sh_004B11:85957..89475- (R570 Sugarcane cultivar)
ATGGTTCTGCTCTATGGTTGGTACTTTTGGTGGCTTCATGTTGAAAAGGT
TCTGAGCTTCCACGCAAGGGACAGCGCTGCAGCCACAACAGCCTCAAAGG
GAGGGCGGCAACAGCAACAGCAACAGAAGCAGCAGCAGGTGGCGATCGAC
GAGATAAGCTGCAGCTCGGGCAAGCTGAGCTTCAAGTGGGACGTGGGCAG
CTGCTCCTCATCATCGTCAGTTGCGTATTCGCCGCTGTCATTGATGTCAG
CGCCAGCAAAGGCCTCGGAGCAGACGCTGCTGACGCCGTTGAGGAAAGAC
TACTGCATGTCAAGGCTGTCATCCATGAGCCAGCAGAGTATGTTGTACGG
CGGCGGCAGCCCAAAGAGCTTGAAGAACATGGAAGGAGAGGAGGAGGCGG
CCTGCAGCTGCAGGACGGCGCAGTGGATCACCACCGATTCAGACTTTGTA
GTGTTGGAGCTGTAA
back to top