Sh_004E05_g000010

Overview
NameSh_004E05_g000010
Unique NameSh_004E05_g000010
Typegene
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length4679
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004E05contigSh_004E05:7832..12510
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Auxin transporter-like protein 3
TypemRNA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
Sh_004E05_t000010Sh_004E05_t000010R570 Sugarcane cultivarmRNA


Sequences
The following sequences are available for this feature:

gene sequence

>Sh_004E05_g000010 ID=Sh_004E05_g000010|Name=Sh_004E05_g000010|organism=R570 Sugarcane cultivar|type=gene|length=4679bp
ATGGCGGTGGGAGGCGGCGGCGGCGGCATTGCCGACGAGAAGCAGGCCCC
TGCCGAGGCGTTCGGCGGGCACCTGCAGGAGGCGGCTGAGATGATGGAGG
AGGAGGAGGAACAGCACAGCGGCCAGTCTGGCGGCGGCGTCAAGTCCCGG
CTGTCGGGCCTGCTGTGGCACGGCGGCTCCGCGTACGACGCGTGGTTCAG
CTGCGCGTCCAACCAGGTGGCCCAGGTGCTTCTGACGCTGCCCTACTCGT
TCGCGCAGCTGGGCATGCTGAGCGGCATCCTGTTCCAGCTCTTCTACGGC
CTGCTGGGCAGCTGGACGGCGTACCTGATCAGCATCCTGTACCTGGAGTA
CCGCACCCGGCGGGAGCGCGACAAGGTGGACTTCCGGAACCACGTGATCC
AGTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCGCCACTGGCGCAACGCC
GGGCTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCT
CATCGGCTGCGCCAGCAACATCTACTACGTCAACGACCGGCTGGACAAGC
GGACGTGGACCTACGTCTTCGGCGCCTGCTGCGCCACCACGGTGTTCATC
CCGTCCTTCCACAACTACCGCGTCTGGTCCTTCCTGGGCCTCGTCATGAC
CACCTACACCGCCTGGTACATCGCCGTCGCCTCGCTCGTCCACGGCCAGG
TCGAGGGCGTCCAGCACTCGGGACCCACCAGGATCGTGCTCTACTTCACC
GGGGCCACCAACATACTCTACACCTTCGGGGGACACGCAGTCACAGTGTG
AGTAGCTACTCCCTCTGGTCCAGTATATCTGGCGCAATCCCGTTTTTCAT
TTCGGCCACAATATCTGGCGGAGTAGGGGATACCGAGAGCCATTAATTAG
TTTGGAGTTAATTAGTCTGTAGTTAAATATATGGCTAGCAACGAAGCCTG
CATGCAGCTAGCAACCAAGCGTTGCATGCATGCGCCAATTCATTTCGGTT
GAGAAAAATACGGAGGACAACTCATTTCTACTGGAGAATCCTTGCGGCTG
GCGGCGCGGCTGTTACCACTTGATACGGAGTTAATGCGCAGCGCATGCTT
TGGTAGAGTTTATTGGTCTCTGGAATTTGGCTCCTGGCGCCAGATATACC
GGACCGGAGGGAGTAGTACTTTAGCTATATCTCTCTTGCATAGTTGCATT
GCTAGCTGCTGCTTAATTAATCACATCATTAGTAGTAGTTTAGTATAATC
TGTATCTTGATTACTCCTAATCCTAGCAGTAGCACTAGTACAGTAGTCAA
CAGAAAGTATATGCAACGGTCACTGATGGTCGCCGGGCGGCCGCGCGTGC
GACGTGCGTGCGCCGTGCGCGCACGCCGCAGGCTGCACGCTGCACGCTCT
GCCCTTGCGGCTCGGCACATCCGGACATCGATCGGCACATGCGTGCATGC
TGCTGGGAATGATGCGGGCCCCATGTGTTTCTGGGGGACCACTGACATGC
ATGCATTCATACGGGCTAGCATGCATGGGGATTAATTGGCCAGGACAAAG
ATAAAAGTGATCGATGGTGGTGCTCAAAATGACAAACATCAAGTTTTATA
CTCCAATTAGCTAGCCGATCGATTCACCTTGGAGCCGTCCAAACCACATC
AGTCCAAATCAACTGGTGTACTAGCTAGTTGAGTACTTGTCTCAACATTA
TCCATGCGTGCATATTACGTCTTCAGCTAGTACTAGTAGCTAATAATGTC
ATTATTCACCACTACGTACTCATATAGGAGTATAGGAGTAGGATCATCAG
ACGCATATATATGTACGGTGCTAACGTAACACGTACTAGTTCCTTTTGTA
ACATCAATCAAGGACTGAACACGTTCACAACAAAGAAATGTACCTGCCTT
GTTTGTTCCCTCTAGCTAGCTAGCTTATCTAGCTATTACAAACAATGCAC
ACAGCACAGAGCACAGAGCAGTGACTGAGCAAGTGTGTGGCCCATGCTGC
TGCTCTCGGTTCTCACTTAGTGCTAGCTTAAGAACGTACAGACCCCCAAC
AAGGACAAGACCGTTGCATGCATAATTGCATCATCCGCGTGCGGTTGCGG
CTAGCAGGCCAACCAGCGGCTCCTTCCTTCCACAGTTGACCTGACGGGTC
AATAATCCATCCCCTGTTCACTTCTGTCCTGGACACCCATGCACAGCACA
GATGCATGCATGCAACCGACACATGGGTCCCACCCTGCCACAAGGCACCA
TGACTCCTTGCTTCCGTTCCATTGCCTGCTTCTTGTTCTCGAGACGACGA
CCCATGCAGCATATGCCTGCCATTGCTTCCTTTTGACTCCTACTACTATT
GCTTTTGCTAAATAGAGTAATTACTAATAATAGCTGCATGCATCCCAGGG
AGATCATGCACGCGATGTGGCGTCCTCAGAAGTTCAAGGCCATCTACCTG
CTGGCGACGCTGTACGTGATGACGCTGACGCTCCCCTCCGCCGCCGCCGC
CTACTGGGCGTTCGGCGACGAGCTGCTGACGCACTCGAACGCGCTGGCGC
TGCTCCCGCGGACGCGCTTCCGCGACGCCGCCGTGGTGCTCATGCTCATC
CACCAGTTCATCACCTTCGGCTTCGCCTGCACCCCGCTCTACTTCGTGTG
GGAGAAGCTCATCGGCCTCCACGACTGCCGCAGCCTCTGCAAGCGCGCCG
CCGCCAGGCTCCCCGTCGTCGTGCCCATCTGGTTCCTCGCCATCATCTTC
CCCTTCTTCGGGCCCATCAACTCCGCCGTCGGATCGCTCCTCGTCAGCTT
CACCGTCTACATCATCCCGGCGCTCGCGCACATGGTCACATTCAGGTCGC
CACAGTCGCGGGAGGTACGTACGGAGTACTTGTTTATTGGCTTATTGATT
GGCTAGCTCATTCATACTTACTCTTCTACTACTATCATACTACTCTACTC
CAACATATGCAACATGTACAACAGCGGTACATGCACTGTGCAGCTTTAAT
TCTTGTCCAGTTCGATACGTATATATAACTGCATGCATCCATGCTGCTAT
CTTGATCGGCCATCAACTTGACGAGACGGTTTCTTGGATGTGCATGGCTA
CACTGGGGTCCATGCAAAGAGATAGCTAGCTAGTCTCCATTGTCGCATGC
ATGCAGTCGCCAACTAGTTAACGTTACGATGGACATGTCGTCCATGTAGG
ACAGCTAAAACCGCATGCATGCGGTTTGCTACTAGAAAACACGTCGGCCC
ACCCTGTCCATCACCTGCGTGCAGTGCGTGCTACCTAGCCGCTGCTGACT
GCTCTATGCGCAACCCGGCCAATCGATGAGCTAGCCTGCTGATGCTGCAT
GGTGAGGCGCGTCGGTGGCCATGGCTTGTCTTAATACTTGTACAGCACAC
TGATTGGAGTCCATGGAAACCTGTAGCGAGATCTCGTAACATCCATCATC
CACAGACCGATCTAGCTATACATTCATACATACATACAAATAAGCCATGG
GTACCATATCATATATGAGTAGTATATAACAAGTACTATTAGGCCCGGTT
TGGTTTTCACATATTAAAGTTTAACTCCCATCACATCAATGTTGCGGCAA
ATGCATGGAGTACTAAATGTAAACTAATTACATACATGTCGGCACAGATT
ATGAGTAATTTACGAGACGAATCTATTAAGCCTAATTAATCCAAAATTGA
AAACTTTTTATCAAATAAGACGAAAATGCTACATTGTTTGTTAAACTTGA
ACACCTCTAACCAAACATGCCCTTAGTAGTATATACATATGCATTTGTAT
AGTACTGGTGCAGTCAGCGTCGTGTCACTGAAGGCAAGACAAAACTGCAG
CGACGACAGCACGCAATTTCTTTTTCAGCACACAAGTGGTGGTGATAATA
ATAAAACCAGCTAGCGCACTGGAAAGCCGCGCGCGTACAACGGTGCAGAG
ACGAGCATGAGCCTTTGTACGTTGTGGTGTCCGCGAGCTCTTGGCATGGA
TGGAGCAGGCGAAGGAGGAAGGGCATACACCATGCAATGATGCAGCCCAC
CATGTCTGAGAAACAACAAAAAGAAGCAGTGGTGGTGAAAGTAACACTTG
AGAGCCTGCTGAGCTCTCAGCAGTCACATCCAATGCACTAGACACAGCCC
ACTTTGACATCAGTAGGATGGATAGCTCATTATATATGTCCTTTCATTAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATAACAATGGCTTACGCGACTGCAGAACGC
CGTGGAGCGGCCGCCGAGGTTCGCCGGCGGGTGGACGGGCGCTTACGTGA
TCAACTCCTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCTTCGGC
GGCTGGGCCAGCATAACCAACTTCGTGCAGCAGGTCAACACCTTCGGCCT
CTTCGCCAAGTGCTACCAGTGCCCGCCGCACCTCACTGCTCCGCCGGCGG
CTCCGGCGTTCACGCCGCCACCATTGGCCCCGCCGGCAACCTCCATGCCA
CCGGCGACGGCGTTCAATGCCACCGGGTTCTTCCCTCCGGTGCCAGCCCC
GGCTCCGGCTCCGTCACCGATGATCAACTTCTTCCTCCGCCACCACCACC
ACGGGCACCATGGACGCCACGGCCTGTGA
back to top

gene from alignment at Sh_004E05:7832..12510-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004E05_g000010 ID=Sh_004E05_g000010|Name=Sh_004E05_g000010|organism=R570 Sugarcane cultivar|type=gene|length=4679bp|location=Sequence derived from alignment at Sh_004E05:7832..12510- (R570 Sugarcane cultivar)
ATGGCGGTGGGAGGCGGCGGCGGCGGCATTGCCGACGAGAAGCAGGCCCC TGCCGAGGCGTTCGGCGGGCACCTGCAGGAGGCGGCTGAGATGATGGAGG AGGAGGAGGAACAGCACAGCGGCCAGTCTGGCGGCGGCGTCAAGTCCCGG CTGTCGGGCCTGCTGTGGCACGGCGGCTCCGCGTACGACGCGTGGTTCAG CTGCGCGTCCAACCAGGTGGCCCAGGTGCTTCTGACGCTGCCCTACTCGT TCGCGCAGCTGGGCATGCTGAGCGGCATCCTGTTCCAGCTCTTCTACGGC CTGCTGGGCAGCTGGACGGCGTACCTGATCAGCATCCTGTACCTGGAGTA CCGCACCCGGCGGGAGCGCGACAAGGTGGACTTCCGGAACCACGTGATCC AGTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCGCCACTGGCGCAACGCC GGGCTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCT CATCGGCTGCGCCAGCAACATCTACTACGTCAACGACCGGCTGGACAAGC GGACGTGGACCTACGTCTTCGGCGCCTGCTGCGCCACCACGGTGTTCATC CCGTCCTTCCACAACTACCGCGTCTGGTCCTTCCTGGGCCTCGTCATGAC CACCTACACCGCCTGGTACATCGCCGTCGCCTCGCTCGTCCACGGCCAGG TCGAGGGCGTCCAGCACTCGGGACCCACCAGGATCGTGCTCTACTTCACC GGGGCCACCAACATACTCTACACCTTCGGGGGACACGCAGTCACAGTGTG AGTAGCTACTCCCTCTGGTCCAGTATATCTGGCGCAATCCCGTTTTTCAT TTCGGCCACAATATCTGGCGGAGTAGGGGATACCGAGAGCCATTAATTAG TTTGGAGTTAATTAGTCTGTAGTTAAATATATGGCTAGCAACGAAGCCTG CATGCAGCTAGCAACCAAGCGTTGCATGCATGCGCCAATTCATTTCGGTT GAGAAAAATACGGAGGACAACTCATTTCTACTGGAGAATCCTTGCGGCTG GCGGCGCGGCTGTTACCACTTGATACGGAGTTAATGCGCAGCGCATGCTT TGGTAGAGTTTATTGGTCTCTGGAATTTGGCTCCTGGCGCCAGATATACC GGACCGGAGGGAGTAGTACTTTAGCTATATCTCTCTTGCATAGTTGCATT GCTAGCTGCTGCTTAATTAATCACATCATTAGTAGTAGTTTAGTATAATC TGTATCTTGATTACTCCTAATCCTAGCAGTAGCACTAGTACAGTAGTCAA CAGAAAGTATATGCAACGGTCACTGATGGTCGCCGGGCGGCCGCGCGTGC GACGTGCGTGCGCCGTGCGCGCACGCCGCAGGCTGCACGCTGCACGCTCT GCCCTTGCGGCTCGGCACATCCGGACATCGATCGGCACATGCGTGCATGC TGCTGGGAATGATGCGGGCCCCATGTGTTTCTGGGGGACCACTGACATGC ATGCATTCATACGGGCTAGCATGCATGGGGATTAATTGGCCAGGACAAAG ATAAAAGTGATCGATGGTGGTGCTCAAAATGACAAACATCAAGTTTTATA CTCCAATTAGCTAGCCGATCGATTCACCTTGGAGCCGTCCAAACCACATC AGTCCAAATCAACTGGTGTACTAGCTAGTTGAGTACTTGTCTCAACATTA TCCATGCGTGCATATTACGTCTTCAGCTAGTACTAGTAGCTAATAATGTC ATTATTCACCACTACGTACTCATATAGGAGTATAGGAGTAGGATCATCAG ACGCATATATATGTACGGTGCTAACGTAACACGTACTAGTTCCTTTTGTA ACATCAATCAAGGACTGAACACGTTCACAACAAAGAAATGTACCTGCCTT GTTTGTTCCCTCTAGCTAGCTAGCTTATCTAGCTATTACAAACAATGCAC ACAGCACAGAGCACAGAGCAGTGACTGAGCAAGTGTGTGGCCCATGCTGC TGCTCTCGGTTCTCACTTAGTGCTAGCTTAAGAACGTACAGACCCCCAAC AAGGACAAGACCGTTGCATGCATAATTGCATCATCCGCGTGCGGTTGCGG CTAGCAGGCCAACCAGCGGCTCCTTCCTTCCACAGTTGACCTGACGGGTC AATAATCCATCCCCTGTTCACTTCTGTCCTGGACACCCATGCACAGCACA GATGCATGCATGCAACCGACACATGGGTCCCACCCTGCCACAAGGCACCA TGACTCCTTGCTTCCGTTCCATTGCCTGCTTCTTGTTCTCGAGACGACGA CCCATGCAGCATATGCCTGCCATTGCTTCCTTTTGACTCCTACTACTATT GCTTTTGCTAAATAGAGTAATTACTAATAATAGCTGCATGCATCCCAGGG AGATCATGCACGCGATGTGGCGTCCTCAGAAGTTCAAGGCCATCTACCTG CTGGCGACGCTGTACGTGATGACGCTGACGCTCCCCTCCGCCGCCGCCGC CTACTGGGCGTTCGGCGACGAGCTGCTGACGCACTCGAACGCGCTGGCGC TGCTCCCGCGGACGCGCTTCCGCGACGCCGCCGTGGTGCTCATGCTCATC CACCAGTTCATCACCTTCGGCTTCGCCTGCACCCCGCTCTACTTCGTGTG GGAGAAGCTCATCGGCCTCCACGACTGCCGCAGCCTCTGCAAGCGCGCCG CCGCCAGGCTCCCCGTCGTCGTGCCCATCTGGTTCCTCGCCATCATCTTC CCCTTCTTCGGGCCCATCAACTCCGCCGTCGGATCGCTCCTCGTCAGCTT CACCGTCTACATCATCCCGGCGCTCGCGCACATGGTCACATTCAGGTCGC CACAGTCGCGGGAGGTACGTACGGAGTACTTGTTTATTGGCTTATTGATT GGCTAGCTCATTCATACTTACTCTTCTACTACTATCATACTACTCTACTC CAACATATGCAACATGTACAACAGCGGTACATGCACTGTGCAGCTTTAAT TCTTGTCCAGTTCGATACGTATATATAACTGCATGCATCCATGCTGCTAT CTTGATCGGCCATCAACTTGACGAGACGGTTTCTTGGATGTGCATGGCTA CACTGGGGTCCATGCAAAGAGATAGCTAGCTAGTCTCCATTGTCGCATGC ATGCAGTCGCCAACTAGTTAACGTTACGATGGACATGTCGTCCATGTAGG ACAGCTAAAACCGCATGCATGCGGTTTGCTACTAGAAAACACGTCGGCCC ACCCTGTCCATCACCTGCGTGCAGTGCGTGCTACCTAGCCGCTGCTGACT GCTCTATGCGCAACCCGGCCAATCGATGAGCTAGCCTGCTGATGCTGCAT GGTGAGGCGCGTCGGTGGCCATGGCTTGTCTTAATACTTGTACAGCACAC TGATTGGAGTCCATGGAAACCTGTAGCGAGATCTCGTAACATCCATCATC CACAGACCGATCTAGCTATACATTCATACATACATACAAATAAGCCATGG GTACCATATCATATATGAGTAGTATATAACAAGTACTATTAGGCCCGGTT TGGTTTTCACATATTAAAGTTTAACTCCCATCACATCAATGTTGCGGCAA ATGCATGGAGTACTAAATGTAAACTAATTACATACATGTCGGCACAGATT ATGAGTAATTTACGAGACGAATCTATTAAGCCTAATTAATCCAAAATTGA AAACTTTTTATCAAATAAGACGAAAATGCTACATTGTTTGTTAAACTTGA ACACCTCTAACCAAACATGCCCTTAGTAGTATATACATATGCATTTGTAT AGTACTGGTGCAGTCAGCGTCGTGTCACTGAAGGCAAGACAAAACTGCAG CGACGACAGCACGCAATTTCTTTTTCAGCACACAAGTGGTGGTGATAATA ATAAAACCAGCTAGCGCACTGGAAAGCCGCGCGCGTACAACGGTGCAGAG ACGAGCATGAGCCTTTGTACGTTGTGGTGTCCGCGAGCTCTTGGCATGGA TGGAGCAGGCGAAGGAGGAAGGGCATACACCATGCAATGATGCAGCCCAC CATGTCTGAGAAACAACAAAAAGAAGCAGTGGTGGTGAAAGTAACACTTG AGAGCCTGCTGAGCTCTCAGCAGTCACATCCAATGCACTAGACACAGCCC ACTTTGACATCAGTAGGATGGATAGCTCATTATATATGTCCTTTCATTAT ATATATATATATATATATATATATATATATATATATATATATATATATAT ATATATATATATATATATATATAACAATGGCTTACGCGACTGCAGAACGC CGTGGAGCGGCCGCCGAGGTTCGCCGGCGGGTGGACGGGCGCTTACGTGA TCAACTCCTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCTTCGGC GGCTGGGCCAGCATAACCAACTTCGTGCAGCAGGTCAACACCTTCGGCCT CTTCGCCAAGTGCTACCAGTGCCCGCCGCACCTCACTGCTCCGCCGGCGG CTCCGGCGTTCACGCCGCCACCATTGGCCCCGCCGGCAACCTCCATGCCA CCGGCGACGGCGTTCAATGCCACCGGGTTCTTCCCTCCGGTGCCAGCCCC GGCTCCGGCTCCGTCACCGATGATCAACTTCTTCCTCCGCCACCACCACC ACGGGCACCATGGACGCCACGGCCTGTGA
back to top