Sh_004E05_t000010

Overview
NameSh_004E05_t000010
Unique NameSh_004E05_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1647
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004E05contigSh_004E05:7832..12510
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Auxin transporter-like protein 3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004E05_g000010Sh_004E05_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004E05_p000010Sh_004E05_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004E05_t000010 ID=Sh_004E05_t000010|Name=Sh_004E05_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1647bp
ATGGCGGTGGGAGGCGGCGGCGGCGGCATTGCCGACGAGAAGCAGGCCCC
TGCCGAGGCGTTCGGCGGGCACCTGCAGGAGGCGGCTGAGATGATGGAGG
AGGAGGAGGAACAGCACAGCGGCCAGTCTGGCGGCGGCGTCAAGTCCCGG
CTGTCGGGCCTGCTGTGGCACGGCGGCTCCGCGTACGACGCGTGGTTCAG
CTGCGCGTCCAACCAGGTGGCCCAGGTGCTTCTGACGCTGCCCTACTCGT
TCGCGCAGCTGGGCATGCTGAGCGGCATCCTGTTCCAGCTCTTCTACGGC
CTGCTGGGCAGCTGGACGGCGTACCTGATCAGCATCCTGTACCTGGAGTA
CCGCACCCGGCGGGAGCGCGACAAGGTGGACTTCCGGAACCACGTGATCC
AGTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCGCCACTGGCGCAACGCC
GGGCTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCT
CATCGGCTGCGCCAGCAACATCTACTACGTCAACGACCGGCTGGACAAGC
GGACGTGGACCTACGTCTTCGGCGCCTGCTGCGCCACCACGGTGTTCATC
CCGTCCTTCCACAACTACCGCGTCTGGTCCTTCCTGGGCCTCGTCATGAC
CACCTACACCGCCTGGTACATCGCCGTCGCCTCGCTCGTCCACGGCCAGG
TCGAGGGCGTCCAGCACTCGGGACCCACCAGGATCGTGCTCTACTTCACC
GGGGCCACCAACATACTCTACACCTTCGGGGGACACGCAGTCACAGTGGA
GATCATGCACGCGATGTGGCGTCCTCAGAAGTTCAAGGCCATCTACCTGC
TGGCGACGCTGTACGTGATGACGCTGACGCTCCCCTCCGCCGCCGCCGCC
TACTGGGCGTTCGGCGACGAGCTGCTGACGCACTCGAACGCGCTGGCGCT
GCTCCCGCGGACGCGCTTCCGCGACGCCGCCGTGGTGCTCATGCTCATCC
ACCAGTTCATCACCTTCGGCTTCGCCTGCACCCCGCTCTACTTCGTGTGG
GAGAAGCTCATCGGCCTCCACGACTGCCGCAGCCTCTGCAAGCGCGCCGC
CGCCAGGCTCCCCGTCGTCGTGCCCATCTGGTTCCTCGCCATCATCTTCC
CCTTCTTCGGGCCCATCAACTCCGCCGTCGGATCGCTCCTCGTCAGCTTC
ACCGTCTACATCATCCCGGCGCTCGCGCACATGGTCACATTCAGGTCGCC
ACAGTCGCGGGAGAACGCCGTGGAGCGGCCGCCGAGGTTCGCCGGCGGGT
GGACGGGCGCTTACGTGATCAACTCCTTCGTGGTGGCGTGGGTGCTGGTG
GTCGGCTTCGGCTTCGGCGGCTGGGCCAGCATAACCAACTTCGTGCAGCA
GGTCAACACCTTCGGCCTCTTCGCCAAGTGCTACCAGTGCCCGCCGCACC
TCACTGCTCCGCCGGCGGCTCCGGCGTTCACGCCGCCACCATTGGCCCCG
CCGGCAACCTCCATGCCACCGGCGACGGCGTTCAATGCCACCGGGTTCTT
CCCTCCGGTGCCAGCCCCGGCTCCGGCTCCGTCACCGATGATCAACTTCT
TCCTCCGCCACCACCACCACGGGCACCATGGACGCCACGGCCTGTGA
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protein sequence of Sh_004E05_p000010

>Sh_004E05_p000010 ID=Sh_004E05_p000010|Name=Sh_004E05_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=549bp
MAVGGGGGGIADEKQAPAEAFGGHLQEAAEMMEEEEEQHSGQSGGGVKSR
LSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGMLSGILFQLFYG
LLGSWTAYLISILYLEYRTRRERDKVDFRNHVIQWFEVLDGLLGRHWRNA
GLAFNCTFLLFGSVIQLIGCASNIYYVNDRLDKRTWTYVFGACCATTVFI
PSFHNYRVWSFLGLVMTTYTAWYIAVASLVHGQVEGVQHSGPTRIVLYFT
GATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLLATLYVMTLTLPSAAAA
YWAFGDELLTHSNALALLPRTRFRDAAVVLMLIHQFITFGFACTPLYFVW
EKLIGLHDCRSLCKRAAARLPVVVPIWFLAIIFPFFGPINSAVGSLLVSF
TVYIIPALAHMVTFRSPQSRENAVERPPRFAGGWTGAYVINSFVVAWVLV
VGFGFGGWASITNFVQQVNTFGLFAKCYQCPPHLTAPPAAPAFTPPPLAP
PATSMPPATAFNATGFFPPVPAPAPAPSPMINFFLRHHHHGHHGRHGL*
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mRNA from alignment at Sh_004E05:7832..12510-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004E05_t000010 ID=Sh_004E05_t000010|Name=Sh_004E05_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=4679bp|location=Sequence derived from alignment at Sh_004E05:7832..12510- (R570 Sugarcane cultivar)
ATGGCGGTGGGAGGCGGCGGCGGCGGCATTGCCGACGAGAAGCAGGCCCC TGCCGAGGCGTTCGGCGGGCACCTGCAGGAGGCGGCTGAGATGATGGAGG AGGAGGAGGAACAGCACAGCGGCCAGTCTGGCGGCGGCGTCAAGTCCCGG CTGTCGGGCCTGCTGTGGCACGGCGGCTCCGCGTACGACGCGTGGTTCAG CTGCGCGTCCAACCAGGTGGCCCAGGTGCTTCTGACGCTGCCCTACTCGT TCGCGCAGCTGGGCATGCTGAGCGGCATCCTGTTCCAGCTCTTCTACGGC CTGCTGGGCAGCTGGACGGCGTACCTGATCAGCATCCTGTACCTGGAGTA CCGCACCCGGCGGGAGCGCGACAAGGTGGACTTCCGGAACCACGTGATCC AGTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCGCCACTGGCGCAACGCC GGGCTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCT CATCGGCTGCGCCAGCAACATCTACTACGTCAACGACCGGCTGGACAAGC GGACGTGGACCTACGTCTTCGGCGCCTGCTGCGCCACCACGGTGTTCATC CCGTCCTTCCACAACTACCGCGTCTGGTCCTTCCTGGGCCTCGTCATGAC CACCTACACCGCCTGGTACATCGCCGTCGCCTCGCTCGTCCACGGCCAGG TCGAGGGCGTCCAGCACTCGGGACCCACCAGGATCGTGCTCTACTTCACC GGGGCCACCAACATACTCTACACCTTCGGGGGACACGCAGTCACAGTGTG AGTAGCTACTCCCTCTGGTCCAGTATATCTGGCGCAATCCCGTTTTTCAT TTCGGCCACAATATCTGGCGGAGTAGGGGATACCGAGAGCCATTAATTAG TTTGGAGTTAATTAGTCTGTAGTTAAATATATGGCTAGCAACGAAGCCTG CATGCAGCTAGCAACCAAGCGTTGCATGCATGCGCCAATTCATTTCGGTT GAGAAAAATACGGAGGACAACTCATTTCTACTGGAGAATCCTTGCGGCTG GCGGCGCGGCTGTTACCACTTGATACGGAGTTAATGCGCAGCGCATGCTT TGGTAGAGTTTATTGGTCTCTGGAATTTGGCTCCTGGCGCCAGATATACC GGACCGGAGGGAGTAGTACTTTAGCTATATCTCTCTTGCATAGTTGCATT GCTAGCTGCTGCTTAATTAATCACATCATTAGTAGTAGTTTAGTATAATC TGTATCTTGATTACTCCTAATCCTAGCAGTAGCACTAGTACAGTAGTCAA CAGAAAGTATATGCAACGGTCACTGATGGTCGCCGGGCGGCCGCGCGTGC GACGTGCGTGCGCCGTGCGCGCACGCCGCAGGCTGCACGCTGCACGCTCT GCCCTTGCGGCTCGGCACATCCGGACATCGATCGGCACATGCGTGCATGC TGCTGGGAATGATGCGGGCCCCATGTGTTTCTGGGGGACCACTGACATGC ATGCATTCATACGGGCTAGCATGCATGGGGATTAATTGGCCAGGACAAAG ATAAAAGTGATCGATGGTGGTGCTCAAAATGACAAACATCAAGTTTTATA CTCCAATTAGCTAGCCGATCGATTCACCTTGGAGCCGTCCAAACCACATC AGTCCAAATCAACTGGTGTACTAGCTAGTTGAGTACTTGTCTCAACATTA TCCATGCGTGCATATTACGTCTTCAGCTAGTACTAGTAGCTAATAATGTC ATTATTCACCACTACGTACTCATATAGGAGTATAGGAGTAGGATCATCAG ACGCATATATATGTACGGTGCTAACGTAACACGTACTAGTTCCTTTTGTA ACATCAATCAAGGACTGAACACGTTCACAACAAAGAAATGTACCTGCCTT GTTTGTTCCCTCTAGCTAGCTAGCTTATCTAGCTATTACAAACAATGCAC ACAGCACAGAGCACAGAGCAGTGACTGAGCAAGTGTGTGGCCCATGCTGC TGCTCTCGGTTCTCACTTAGTGCTAGCTTAAGAACGTACAGACCCCCAAC AAGGACAAGACCGTTGCATGCATAATTGCATCATCCGCGTGCGGTTGCGG CTAGCAGGCCAACCAGCGGCTCCTTCCTTCCACAGTTGACCTGACGGGTC AATAATCCATCCCCTGTTCACTTCTGTCCTGGACACCCATGCACAGCACA GATGCATGCATGCAACCGACACATGGGTCCCACCCTGCCACAAGGCACCA TGACTCCTTGCTTCCGTTCCATTGCCTGCTTCTTGTTCTCGAGACGACGA CCCATGCAGCATATGCCTGCCATTGCTTCCTTTTGACTCCTACTACTATT GCTTTTGCTAAATAGAGTAATTACTAATAATAGCTGCATGCATCCCAGGG AGATCATGCACGCGATGTGGCGTCCTCAGAAGTTCAAGGCCATCTACCTG CTGGCGACGCTGTACGTGATGACGCTGACGCTCCCCTCCGCCGCCGCCGC CTACTGGGCGTTCGGCGACGAGCTGCTGACGCACTCGAACGCGCTGGCGC TGCTCCCGCGGACGCGCTTCCGCGACGCCGCCGTGGTGCTCATGCTCATC CACCAGTTCATCACCTTCGGCTTCGCCTGCACCCCGCTCTACTTCGTGTG GGAGAAGCTCATCGGCCTCCACGACTGCCGCAGCCTCTGCAAGCGCGCCG CCGCCAGGCTCCCCGTCGTCGTGCCCATCTGGTTCCTCGCCATCATCTTC CCCTTCTTCGGGCCCATCAACTCCGCCGTCGGATCGCTCCTCGTCAGCTT CACCGTCTACATCATCCCGGCGCTCGCGCACATGGTCACATTCAGGTCGC CACAGTCGCGGGAGGTACGTACGGAGTACTTGTTTATTGGCTTATTGATT GGCTAGCTCATTCATACTTACTCTTCTACTACTATCATACTACTCTACTC CAACATATGCAACATGTACAACAGCGGTACATGCACTGTGCAGCTTTAAT TCTTGTCCAGTTCGATACGTATATATAACTGCATGCATCCATGCTGCTAT CTTGATCGGCCATCAACTTGACGAGACGGTTTCTTGGATGTGCATGGCTA CACTGGGGTCCATGCAAAGAGATAGCTAGCTAGTCTCCATTGTCGCATGC ATGCAGTCGCCAACTAGTTAACGTTACGATGGACATGTCGTCCATGTAGG ACAGCTAAAACCGCATGCATGCGGTTTGCTACTAGAAAACACGTCGGCCC ACCCTGTCCATCACCTGCGTGCAGTGCGTGCTACCTAGCCGCTGCTGACT GCTCTATGCGCAACCCGGCCAATCGATGAGCTAGCCTGCTGATGCTGCAT GGTGAGGCGCGTCGGTGGCCATGGCTTGTCTTAATACTTGTACAGCACAC TGATTGGAGTCCATGGAAACCTGTAGCGAGATCTCGTAACATCCATCATC CACAGACCGATCTAGCTATACATTCATACATACATACAAATAAGCCATGG GTACCATATCATATATGAGTAGTATATAACAAGTACTATTAGGCCCGGTT TGGTTTTCACATATTAAAGTTTAACTCCCATCACATCAATGTTGCGGCAA ATGCATGGAGTACTAAATGTAAACTAATTACATACATGTCGGCACAGATT ATGAGTAATTTACGAGACGAATCTATTAAGCCTAATTAATCCAAAATTGA AAACTTTTTATCAAATAAGACGAAAATGCTACATTGTTTGTTAAACTTGA ACACCTCTAACCAAACATGCCCTTAGTAGTATATACATATGCATTTGTAT AGTACTGGTGCAGTCAGCGTCGTGTCACTGAAGGCAAGACAAAACTGCAG CGACGACAGCACGCAATTTCTTTTTCAGCACACAAGTGGTGGTGATAATA ATAAAACCAGCTAGCGCACTGGAAAGCCGCGCGCGTACAACGGTGCAGAG ACGAGCATGAGCCTTTGTACGTTGTGGTGTCCGCGAGCTCTTGGCATGGA TGGAGCAGGCGAAGGAGGAAGGGCATACACCATGCAATGATGCAGCCCAC CATGTCTGAGAAACAACAAAAAGAAGCAGTGGTGGTGAAAGTAACACTTG AGAGCCTGCTGAGCTCTCAGCAGTCACATCCAATGCACTAGACACAGCCC ACTTTGACATCAGTAGGATGGATAGCTCATTATATATGTCCTTTCATTAT ATATATATATATATATATATATATATATATATATATATATATATATATAT ATATATATATATATATATATATAACAATGGCTTACGCGACTGCAGAACGC CGTGGAGCGGCCGCCGAGGTTCGCCGGCGGGTGGACGGGCGCTTACGTGA TCAACTCCTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCTTCGGC GGCTGGGCCAGCATAACCAACTTCGTGCAGCAGGTCAACACCTTCGGCCT CTTCGCCAAGTGCTACCAGTGCCCGCCGCACCTCACTGCTCCGCCGGCGG CTCCGGCGTTCACGCCGCCACCATTGGCCCCGCCGGCAACCTCCATGCCA CCGGCGACGGCGTTCAATGCCACCGGGTTCTTCCCTCCGGTGCCAGCCCC GGCTCCGGCTCCGTCACCGATGATCAACTTCTTCCTCCGCCACCACCACC ACGGGCACCATGGACGCCACGGCCTGTGA
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Coding sequence (CDS) from alignment at Sh_004E05:7832..12510-

>Sh_004E05_t000010 ID=Sh_004E05_t000010|Name=Sh_004E05_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=1647bp|location=Sequence derived from alignment at Sh_004E05:7832..12510- (R570 Sugarcane cultivar)
ATGGCGGTGGGAGGCGGCGGCGGCGGCATTGCCGACGAGAAGCAGGCCCC
TGCCGAGGCGTTCGGCGGGCACCTGCAGGAGGCGGCTGAGATGATGGAGG
AGGAGGAGGAACAGCACAGCGGCCAGTCTGGCGGCGGCGTCAAGTCCCGG
CTGTCGGGCCTGCTGTGGCACGGCGGCTCCGCGTACGACGCGTGGTTCAG
CTGCGCGTCCAACCAGGTGGCCCAGGTGCTTCTGACGCTGCCCTACTCGT
TCGCGCAGCTGGGCATGCTGAGCGGCATCCTGTTCCAGCTCTTCTACGGC
CTGCTGGGCAGCTGGACGGCGTACCTGATCAGCATCCTGTACCTGGAGTA
CCGCACCCGGCGGGAGCGCGACAAGGTGGACTTCCGGAACCACGTGATCC
AGTGGTTCGAGGTGCTGGACGGGCTGCTGGGCCGCCACTGGCGCAACGCC
GGGCTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCT
CATCGGCTGCGCCAGCAACATCTACTACGTCAACGACCGGCTGGACAAGC
GGACGTGGACCTACGTCTTCGGCGCCTGCTGCGCCACCACGGTGTTCATC
CCGTCCTTCCACAACTACCGCGTCTGGTCCTTCCTGGGCCTCGTCATGAC
CACCTACACCGCCTGGTACATCGCCGTCGCCTCGCTCGTCCACGGCCAGG
TCGAGGGCGTCCAGCACTCGGGACCCACCAGGATCGTGCTCTACTTCACC
GGGGCCACCAACATACTCTACACCTTCGGGGGACACGCAGTCACAGTGGA
GATCATGCACGCGATGTGGCGTCCTCAGAAGTTCAAGGCCATCTACCTGC
TGGCGACGCTGTACGTGATGACGCTGACGCTCCCCTCCGCCGCCGCCGCC
TACTGGGCGTTCGGCGACGAGCTGCTGACGCACTCGAACGCGCTGGCGCT
GCTCCCGCGGACGCGCTTCCGCGACGCCGCCGTGGTGCTCATGCTCATCC
ACCAGTTCATCACCTTCGGCTTCGCCTGCACCCCGCTCTACTTCGTGTGG
GAGAAGCTCATCGGCCTCCACGACTGCCGCAGCCTCTGCAAGCGCGCCGC
CGCCAGGCTCCCCGTCGTCGTGCCCATCTGGTTCCTCGCCATCATCTTCC
CCTTCTTCGGGCCCATCAACTCCGCCGTCGGATCGCTCCTCGTCAGCTTC
ACCGTCTACATCATCCCGGCGCTCGCGCACATGGTCACATTCAGGTCGCC
ACAGTCGCGGGAGAACGCCGTGGAGCGGCCGCCGAGGTTCGCCGGCGGGT
GGACGGGCGCTTACGTGATCAACTCCTTCGTGGTGGCGTGGGTGCTGGTG
GTCGGCTTCGGCTTCGGCGGCTGGGCCAGCATAACCAACTTCGTGCAGCA
GGTCAACACCTTCGGCCTCTTCGCCAAGTGCTACCAGTGCCCGCCGCACC
TCACTGCTCCGCCGGCGGCTCCGGCGTTCACGCCGCCACCATTGGCCCCG
CCGGCAACCTCCATGCCACCGGCGACGGCGTTCAATGCCACCGGGTTCTT
CCCTCCGGTGCCAGCCCCGGCTCCGGCTCCGTCACCGATGATCAACTTCT
TCCTCCGCCACCACCACCACGGGCACCATGGACGCCACGGCCTGTGA
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