Sh_004E05_t000020

Overview
NameSh_004E05_t000020
Unique NameSh_004E05_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004E05contigSh_004E05:31087..32384
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDoubtful hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004E05_g000020Sh_004E05_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004E05_p000020Sh_004E05_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004E05_t000020 ID=Sh_004E05_t000020|Name=Sh_004E05_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=237bp
ATGCTCAAGCTTGATCTTGGTGTATCATTTGAGAAGAGGATAGGGTTGGA
AGAGAACCAGGCCTTGGTGGCTTTCTCAACAACAAGGATGTATAGGCATT
CCTTTGTGGATTGCTTGAACCTCAGGTTGGATCTTATGTCTCCTCATGTT
CTTTTTTCCAATGCGTCCTTATGCTTTTGTGTGGTTGACATATGGAAAGA
ATCCCCAATCTACTTGTCCAAGCATTTGTGGTTGTAG
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protein sequence of Sh_004E05_p000020

>Sh_004E05_p000020 ID=Sh_004E05_p000020|Name=Sh_004E05_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=79bp
MLKLDLGVSFEKRIGLEENQALVAFSTTRMYRHSFVDCLNLRLDLMSPHV
LFSNASLCFCVVDIWKESPIYLSKHLWL*
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mRNA from alignment at Sh_004E05:31087..32384-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004E05_t000020 ID=Sh_004E05_t000020|Name=Sh_004E05_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1298bp|location=Sequence derived from alignment at Sh_004E05:31087..32384- (R570 Sugarcane cultivar)
TCTATGAATGAAGATTGAAGTTCACACTTCTTTTAGGTGTATCCATGTTT AGAGAGGATCTCAAACATAATTTTATAGGATACGAACTCATTCTGAGTCT TTAGAATGTTGATTCTACCAGATAGGGGCCGAACATCTTGCATGGAGCAA AGGTCCGGTGGGAAGAATGTTTCAGGTGGGAGGTCGTCCAATTTGGGGTT TTTGTCTAGTTCATCAGGTATATGGCCTTGGCTAGAGGTCTAGTTTGGTG TTCATTTTGTGCATGTTTTTGTCTCTAGGACCGAACATCTAGTCACCTAA CCAGAGGTATAATAATGCACGCACACGCACAATAATGGCCAGTTTTTGGA GGCCCGATAATCCCATTTCCCTCCCTTACAACTTTTAGCCACTTTGAGAC AATTTATCCATAGCATTCATTCCTCCCTCTCGTCCACCCCCTTGAGCCCA ACTCTTGTAGGCTTTGAGATTTGGAGTGTGGATTTGAGTGGGAAAAGCTT GGGGTTAAGATACTTCAGTGCAGGAAGATCATTTCCATCATATTGAACAT TCAAACACTCCTTCAAGGTGTGAGTTTCAGTCTATTACTCTTGGATTTGT GGAATATAATCTGTCAAGGAGTTGCCCATTGAAGCAACCCAACCTTTTTA GAGTGCTCCAGGAAGTTTGTATCACTCCAACTATTGTAGTAAGAATGCTC AAGCTTGATCTTGGTGTATCATTTGAGAAGAGGATAGGGTTGGAAGAGAA CCAGGCCTTGGTGGCTTTCTCAACAACAAGGATGTATAGGCATTCCTTTG TGGATTGCTTGAACCTCAGGTTGGATCTTATGTCTCCTCATGTTCTTTTT TCCAATGCGTCCTTATGCTTTTGTGTGGTTGACATATGGAAAGAATCCCC AATCTACTTGTCCAAGCATTTGTGGTTGTAGGTTACAAATGGAAATATCT CATTACTTCACATACATAGAGGCCTTGGTAATGATGGATGTTCGGTTAAA ACTAGACCTTCGGTCCATATTTTAATTTCATAGTTTGTTTTGAATTTTTA GGAACTAACCTATTCACCACACCCCCTCTAGGCGTACGTAGCTGATCCTT TCAATTAATATTGGAGAATAATCCTTGTGGTTAGCGCTCTACCACATGAG GCTAAATGACGGACTTGGAAAGACAGGTGATAAAGAAAATGAACTAGTCG TGGTTGAAGAAGTAGGTGAAGACAAAGAAGATAGGATAAACCCAACAACA AGCCTTTGTTCAAAAAGTGAAGTGTCACTAACAATTCCAATAAGAAGT
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Coding sequence (CDS) from alignment at Sh_004E05:31087..32384-

>Sh_004E05_t000020 ID=Sh_004E05_t000020|Name=Sh_004E05_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=237bp|location=Sequence derived from alignment at Sh_004E05:31087..32384- (R570 Sugarcane cultivar)
ATGCTCAAGCTTGATCTTGGTGTATCATTTGAGAAGAGGATAGGGTTGGA
AGAGAACCAGGCCTTGGTGGCTTTCTCAACAACAAGGATGTATAGGCATT
CCTTTGTGGATTGCTTGAACCTCAGGTTGGATCTTATGTCTCCTCATGTT
CTTTTTTCCAATGCGTCCTTATGCTTTTGTGTGGTTGACATATGGAAAGA
ATCCCCAATCTACTTGTCCAAGCATTTGTGGTTGTAG
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