Sh_004E05_t000060

Overview
NameSh_004E05_t000060
Unique NameSh_004E05_t000060
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length996
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004E05contigSh_004E05:71379..73841
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteThaumatin-like protein 1a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004E05_g000060Sh_004E05_g000060R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004E05_p000060Sh_004E05_p000060R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004E05_t000060 ID=Sh_004E05_t000060|Name=Sh_004E05_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=996bp
ATGGCGGCGGCGACGGCAGCCGTGCGTTCTTGGCGCCGGGCATTCGCCGC
GTTGGCGCTGCTCCTTCAGCTGCGCGGCGCGCGGTCGGCGACGTTCACCA
TCGCCAACAGCTGCGGCTACACGGTGTGGCCGGGCCTGCTGTCCAGCGCG
GGCTCCGCGGCGCTGCCCAGCACGGGCTTCGCGCTGGCGCCGGGGGAGTC
CCGCGCCGTGGCGGCGCCCGCGGGGTGGTCGGGCCGCCTCTGGGGCCGCA
CGCTCTGCGCCGCCGACGCCGCCACGGGGCGGTTCGCGTGCGCCACGGGG
GACTGCGGCTCCGGCGACGTCCAGTGCAACGGCGGCGGCGCCGCCACGCC
CGCCACGCTGGCCGAGTTCACGCTCGACGGCAGCGGCGGGCTCGACTTCT
ACGACGTCAGCCTCGTCGACGGGTACAACCTGCCCATGGTCGTCGCGCCC
ACCACCAGCAGCAGCGCCTCCTCCGCCACGGCAGCAACCGGCAAGTGCGC
GCCGACGGGGTGCGCCGCGGAGCTGAACGCCGCGTGCCCGGCGGGCCTGC
GGGTGGAGGCCGCGGCGGACGGCGGGCCCGTGGCGTGCCGGAGCGCGTGC
GACGCCTTCGGGGACGCGCAGTACTGCTGCAGCGGCGCTTATGGGAATCC
TAACACATGCCGGCCATCAACGTACTCACAGTTCTTCAAGACCGCGTGCC
CGCGCGCCTACAGCTACGCCTACGACGACGCCACCTCCACATTCACCTGC
GCCGCCGGCAGCACCGACTACACCGTCACCTTCTGCCCCGCAGTGCCCAC
CAGCGTGAAGTCGACGGGGCAGAACCCGCAGGCCGCCGGGTTGCCGCAGC
AGCTGAACAACGGCACCACCATGGTCTTCTTCGGCGGCAACACGCAGACC
AGCAGCGCCGCCGCCGCTTCCGCCAACCTTCTCTACGCCGTCACCATCAC
CGCGGCGGCCGTCGCGCTCGCGCTCTCGGGCTCGGCTCTCGTGTGA
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protein sequence of Sh_004E05_p000060

>Sh_004E05_p000060 ID=Sh_004E05_p000060|Name=Sh_004E05_p000060|organism=R570 Sugarcane cultivar|type=polypeptide|length=332bp
MAAATAAVRSWRRAFAALALLLQLRGARSATFTIANSCGYTVWPGLLSSA
GSAALPSTGFALAPGESRAVAAPAGWSGRLWGRTLCAADAATGRFACATG
DCGSGDVQCNGGGAATPATLAEFTLDGSGGLDFYDVSLVDGYNLPMVVAP
TTSSSASSATAATGKCAPTGCAAELNAACPAGLRVEAAADGGPVACRSAC
DAFGDAQYCCSGAYGNPNTCRPSTYSQFFKTACPRAYSYAYDDATSTFTC
AAGSTDYTVTFCPAVPTSVKSTGQNPQAAGLPQQLNNGTTMVFFGGNTQT
SSAAAASANLLYAVTITAAAVALALSGSALV*
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mRNA from alignment at Sh_004E05:71379..73841-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004E05_t000060 ID=Sh_004E05_t000060|Name=Sh_004E05_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=2463bp|location=Sequence derived from alignment at Sh_004E05:71379..73841- (R570 Sugarcane cultivar)
ATGGCGGCGGCGACGGCAGCCGTGCGTTCTTGGCGCCGGGCATTCGCCGC GTTGGCGCTGCTCCTTCAGCTGCGCGGCGCGCGGTCGGCGACGTTCACCA TCGCCAACAGCTGCGGCTACACGGTGTGGCCGGGCCTGCTGTCCAGCGCG GGCTCCGCGGCGCTGCCCAGCACGGGCTTCGCGCTGGCGCCGGGGGAGTC CCGCGCCGTGGCGGCGCCCGCGGGGTGGTCGGGCCGCCTCTGGGGCCGCA CGCTCTGCGCCGCCGACGCCGCCACGGGGCGGTTCGCGTGCGCCACGGGG GACTGCGGCTCCGGCGACGTCCAGTGCAACGGCGGCGGCGCCGCCACGCC CGCCACGCTGGCCGAGTTCACGCTCGACGGCAGCGGCGGGCTCGACTTCT ACGACGTCAGCCTCGTCGACGGGTACAACCTGCCCATGGTCGTCGCGCCC ACCACCAGCAGCAGCGCCTCCTCCGCCACGGCAGCAACCGGCAAGTGCGC GCCGACGGGGTGCGCCGCGGAGCTGAACGCCGCGTGCCCGGCGGGCCTGC GGGTGGAGGCCGCGGCGGACGGCGGGCCCGTGGCGTGCCGGAGCGCGTGC GACGCCTTCGGGGACGCGCAGTACTGCTGCAGCGGCGCTTATGGGAATCC TAACACATGCCGGCCATCAACGTACTCACAGTTCTTCAAGACCGCGTGCC CGCGCGCCTACAGCTACGCCTACGACGACGCCACCTCCACATTCACCTGC GCCGCCGGCAGCACCGACTACACCGTCACCTTCTGCCCCGCAGTGCCCAC CAGGTACCAGCAAAGATACCGTATTCACCATTAATAGTTCTTCTCTACTA CGTATTACAGTATAGTAGTTGTGTTTAATAATTTTAGTAAAGAATGACAA ATCCGCACTGCCACTACACTAAGAACGACTAGTTTCATCCTTCATTCCTA CCATTAGACTACCCGCACTCATGGACCTCTATATTCATCCTCTATACATC CTAGTCAGCAAGATTCTCTCCTCTATACTCAATTCTCCCGCACTCATCCA TCCTCTATATCATCCTCTATCCACTCTATCCACTTGTCACTTTATCTAAA TATATCCATGTGTGATCTAGTTTTGAAGGATTTATTGAGACGAATTTAAT GGTGCAATCGAAATTTAATTTGGATTTTTGGTTTGTGAGTTATAGCATTT TTTCCTTTGTTTAGCTAGTGGGGCCCGCCACTTTAGAGTATAGAGTAAGC ACAGTACTACTCTAAATATAGAGTGAGAGAAAGAATAGAGTATCGTTTTA GAGTACCCAGTGCAGCGGTTTTTACTCTATATCCATACTCTAAAGCTTTA GAGTATCGTTTTAGAGTACCCACTGCGGGTAGTCTTAGCAATAGTATATT AGTTAAAAATGATTAATAAGATACTATTAGCAGTGGTACACCATTCTGTC CGCACGTACTGTAGCAGTAATTGTGGGAGTGACTAGTGACAAGTCACAGG TGGGTTGGGTTGGTGACGCATTTCGAGGAGGTAAGTTACCAACGGCTAGT GAGAAAACGGCTAGGAAGGCAGGCACGTGCGCCCAGGCACGCGCGGTTGT CCAGTCCACGTAGGACAAGGTTTGCTGCTGGTTTAGCCGTTCCGGCTTTG GGCTCTCACAGGTGGTCCTGGCAGTTGGCACGGCCCAGCAGGTCAAATAC AGTACAGCATGAACACCAACATAACAGAGCAAACATGTTTTAGTTATGGC ACCATGCCACCAATTTATCTACTCTTGAGTCGCTATCAGTTACTGTACTA GCTGTGACTCTGACCATTTGAATACTGTTGCATGCAACAGCGTGAAGTCG ACGGGGCAGAACCCGCAGGCCGCCGGGTTGCCGCAGCAGCTGAACAACGG CACCACCATGGTCTTCTTCGGCGGCAACACGCAGACCAGCAGCGCCGCCG CCGCTTCCGCCAACCTTCTCTACGCCGTCACCATCACCGCGGCGGCCGTC GCGCTCGCGCTCTCGGGCTCGGCTCTCGTGTGAGCGCACCCGGGTCCGGT GCTACCGCAGCACTAGGTTGATCCGTCACCGTCGCTGCTAGGTGGGGCCA CGCATATCAGGTGCTTTTGACCGGGTCACAGACAGGGTGAATTGGTGATA TGGTGAGCATACATGCCGTATGTTGCAGCCCCTAGCGACTGGGACGGAAC AAGAGCAAAGTACTGTACCGTATTGTAGGCTTGTAGCCTAGGTAGGACGA GTAGAAGTAGACTAGTTTCTGTCTTTTTTTTTTTGGCTCCGAAAATATTC TTTTCAACTGTTGGGCAGAGACAGGCGGGTAATTCTTTCACTATTTTTTC GGATAATGCAGGACTACATAGGTCGTATCCATCACAAGGATTTGTTGTAA CCTCAGAGTGATTATTGGTTGATTGATTCTATTGGGGGGAAATAATCAAA TCTTAAGCTTCTC
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Coding sequence (CDS) from alignment at Sh_004E05:71379..73841-

>Sh_004E05_t000060 ID=Sh_004E05_t000060|Name=Sh_004E05_t000060|organism=R570 Sugarcane cultivar|type=CDS|length=996bp|location=Sequence derived from alignment at Sh_004E05:71379..73841- (R570 Sugarcane cultivar)
ATGGCGGCGGCGACGGCAGCCGTGCGTTCTTGGCGCCGGGCATTCGCCGC
GTTGGCGCTGCTCCTTCAGCTGCGCGGCGCGCGGTCGGCGACGTTCACCA
TCGCCAACAGCTGCGGCTACACGGTGTGGCCGGGCCTGCTGTCCAGCGCG
GGCTCCGCGGCGCTGCCCAGCACGGGCTTCGCGCTGGCGCCGGGGGAGTC
CCGCGCCGTGGCGGCGCCCGCGGGGTGGTCGGGCCGCCTCTGGGGCCGCA
CGCTCTGCGCCGCCGACGCCGCCACGGGGCGGTTCGCGTGCGCCACGGGG
GACTGCGGCTCCGGCGACGTCCAGTGCAACGGCGGCGGCGCCGCCACGCC
CGCCACGCTGGCCGAGTTCACGCTCGACGGCAGCGGCGGGCTCGACTTCT
ACGACGTCAGCCTCGTCGACGGGTACAACCTGCCCATGGTCGTCGCGCCC
ACCACCAGCAGCAGCGCCTCCTCCGCCACGGCAGCAACCGGCAAGTGCGC
GCCGACGGGGTGCGCCGCGGAGCTGAACGCCGCGTGCCCGGCGGGCCTGC
GGGTGGAGGCCGCGGCGGACGGCGGGCCCGTGGCGTGCCGGAGCGCGTGC
GACGCCTTCGGGGACGCGCAGTACTGCTGCAGCGGCGCTTATGGGAATCC
TAACACATGCCGGCCATCAACGTACTCACAGTTCTTCAAGACCGCGTGCC
CGCGCGCCTACAGCTACGCCTACGACGACGCCACCTCCACATTCACCTGC
GCCGCCGGCAGCACCGACTACACCGTCACCTTCTGCCCCGCAGTGCCCAC
CAGCGTGAAGTCGACGGGGCAGAACCCGCAGGCCGCCGGGTTGCCGCAGC
AGCTGAACAACGGCACCACCATGGTCTTCTTCGGCGGCAACACGCAGACC
AGCAGCGCCGCCGCCGCTTCCGCCAACCTTCTCTACGCCGTCACCATCAC
CGCGGCGGCCGTCGCGCTCGCGCTCTCGGGCTCGGCTCTCGTGTGA
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