Sh_004G10_t000020

Overview
NameSh_004G10_t000020
Unique NameSh_004G10_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004G10contigSh_004G10:4549..4953
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004G10_g000020Sh_004G10_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004G10_p000020Sh_004G10_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004G10_t000020 ID=Sh_004G10_t000020|Name=Sh_004G10_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=405bp
ATGGCCGCTGGACGAGCGGCGGCCATGGTGGTGGCGGTGGCGTCAGCGGC
GGTGCTGCTGCTCGCCGGCGGCGCGTACGCGGACTGCTACAACGACTGCT
TCGACGACTGCACGTCCAGGATGAAGCAGCGAGACTACTGCAGCTACGCC
TGCGACAAGGTCTGCTCGCCTGATGCTGATGCCACGCTCCACCAGCGTCC
GCGTCCGCGTCCCCTCGCCGTCGTGGGGCCAGCAGTGTTGCCCGACCACC
GCCTGTTGGACAAGAAGCAGGACGCTGACGCTGTCCGGCCGGCGGCGTTG
CCCGACCACCCCTTCCACGAGACGCACGGCGGCGGCGTCAAGCCGGCAGG
GGAGCCGGATCCAGGGCACGTCGTCCGTCCGGCACGTGTGCCCGTCCTCC
CCTGA
back to top

protein sequence of Sh_004G10_p000020

>Sh_004G10_p000020 ID=Sh_004G10_p000020|Name=Sh_004G10_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=135bp
MAAGRAAAMVVAVASAAVLLLAGGAYADCYNDCFDDCTSRMKQRDYCSYA
CDKVCSPDADATLHQRPRPRPLAVVGPAVLPDHRLLDKKQDADAVRPAAL
PDHPFHETHGGGVKPAGEPDPGHVVRPARVPVLP*
back to top

mRNA from alignment at Sh_004G10:4549..4953-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004G10_t000020 ID=Sh_004G10_t000020|Name=Sh_004G10_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=405bp|location=Sequence derived from alignment at Sh_004G10:4549..4953- (R570 Sugarcane cultivar)
ATGGCCGCTGGACGAGCGGCGGCCATGGTGGTGGCGGTGGCGTCAGCGGC GGTGCTGCTGCTCGCCGGCGGCGCGTACGCGGACTGCTACAACGACTGCT TCGACGACTGCACGTCCAGGATGAAGCAGCGAGACTACTGCAGCTACGCC TGCGACAAGGTCTGCTCGCCTGATGCTGATGCCACGCTCCACCAGCGTCC GCGTCCGCGTCCCCTCGCCGTCGTGGGGCCAGCAGTGTTGCCCGACCACC GCCTGTTGGACAAGAAGCAGGACGCTGACGCTGTCCGGCCGGCGGCGTTG CCCGACCACCCCTTCCACGAGACGCACGGCGGCGGCGTCAAGCCGGCAGG GGAGCCGGATCCAGGGCACGTCGTCCGTCCGGCACGTGTGCCCGTCCTCC CCTGA
back to top

Coding sequence (CDS) from alignment at Sh_004G10:4549..4953-

>Sh_004G10_t000020 ID=Sh_004G10_t000020|Name=Sh_004G10_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=405bp|location=Sequence derived from alignment at Sh_004G10:4549..4953- (R570 Sugarcane cultivar)
ATGGCCGCTGGACGAGCGGCGGCCATGGTGGTGGCGGTGGCGTCAGCGGC
GGTGCTGCTGCTCGCCGGCGGCGCGTACGCGGACTGCTACAACGACTGCT
TCGACGACTGCACGTCCAGGATGAAGCAGCGAGACTACTGCAGCTACGCC
TGCGACAAGGTCTGCTCGCCTGATGCTGATGCCACGCTCCACCAGCGTCC
GCGTCCGCGTCCCCTCGCCGTCGTGGGGCCAGCAGTGTTGCCCGACCACC
GCCTGTTGGACAAGAAGCAGGACGCTGACGCTGTCCGGCCGGCGGCGTTG
CCCGACCACCCCTTCCACGAGACGCACGGCGGCGGCGTCAAGCCGGCAGG
GGAGCCGGATCCAGGGCACGTCGTCCGTCCGGCACGTGTGCCCGTCCTCC
CCTGA
back to top