Sh_004I18_t000020

Overview
NameSh_004I18_t000020
Unique NameSh_004I18_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length744
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004I18contigSh_004I18:45715..46458
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteVQ motif family protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004I18_g000020Sh_004I18_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004I18_p000020Sh_004I18_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004I18_t000020 ID=Sh_004I18_t000020|Name=Sh_004I18_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=744bp
ATGGGTGACACTGGAGCGAACATGGCCTCCTGGGGCGGGTTCTACGGGGG
CGGCGGCGCGCCGGCGACGACGGAGGCGACGGTGGTGACGACGGCGGCGG
CAGTAGCAGCGGCAGGCGGGTCGGTGTCGAGCCCGACGTCCGGCGGGTCC
GGTGGTGGCAGCCCGACCCGCGCGCAGCAGCAGCCCGGGGTCGGGGTGGA
GGGCGGGCGCGTGGGGAAGCCCGCGCGGCGGCGGTCCCGCGCGTCCCGCC
GCGCGCCCGTCACGCTGCTCAACACGGACACCTCCAACTTCCGCGCCATG
GTGCAGCAGTTCACCGGCATCCCCGCGGGGCCCTACGGCCCCGGCGGCGG
CGCGGGCGGCGGGCCCGTGATCAGCTTCGGTGGCGGCCCCGGCGAGTACG
GCCCGCAGCTGGTGCGCCCGTCGCCGACGTCGGCCGTCATGTCGTTCGAC
CACCTGGCGGCGGCGCACGCGCACCACCACCAGCACCGGCCGACGGCCAC
GTCGCTGCAGAGCCAGCTCTTCAGGCCGCACCAGCAGCACCAGCAGCAGT
ACGGCGGTGACGTCGGCTACGGCATGCACGGAGGCGGGGACGGCATGGCG
CCGTCGTTCTTGCATGGCGGGTTCGAGTCGTCGGCGGAGGACCGGCTGCT
GCTGCAGAGCATGATGCAGGCGGTGCAGACCACGATGCCCACCGGCCGCC
CGGCCTCCACTAACAACGGCGGCAATGGCTACAACTTCGGCTGA
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protein sequence of Sh_004I18_p000020

>Sh_004I18_p000020 ID=Sh_004I18_p000020|Name=Sh_004I18_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=248bp
MGDTGANMASWGGFYGGGGAPATTEATVVTTAAAVAAAGGSVSSPTSGGS
GGGSPTRAQQQPGVGVEGGRVGKPARRRSRASRRAPVTLLNTDTSNFRAM
VQQFTGIPAGPYGPGGGAGGGPVISFGGGPGEYGPQLVRPSPTSAVMSFD
HLAAAHAHHHQHRPTATSLQSQLFRPHQQHQQQYGGDVGYGMHGGGDGMA
PSFLHGGFESSAEDRLLLQSMMQAVQTTMPTGRPASTNNGGNGYNFG*
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mRNA from alignment at Sh_004I18:45715..46458+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004I18_t000020 ID=Sh_004I18_t000020|Name=Sh_004I18_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=744bp|location=Sequence derived from alignment at Sh_004I18:45715..46458+ (R570 Sugarcane cultivar)
ATGGGTGACACTGGAGCGAACATGGCCTCCTGGGGCGGGTTCTACGGGGG CGGCGGCGCGCCGGCGACGACGGAGGCGACGGTGGTGACGACGGCGGCGG CAGTAGCAGCGGCAGGCGGGTCGGTGTCGAGCCCGACGTCCGGCGGGTCC GGTGGTGGCAGCCCGACCCGCGCGCAGCAGCAGCCCGGGGTCGGGGTGGA GGGCGGGCGCGTGGGGAAGCCCGCGCGGCGGCGGTCCCGCGCGTCCCGCC GCGCGCCCGTCACGCTGCTCAACACGGACACCTCCAACTTCCGCGCCATG GTGCAGCAGTTCACCGGCATCCCCGCGGGGCCCTACGGCCCCGGCGGCGG CGCGGGCGGCGGGCCCGTGATCAGCTTCGGTGGCGGCCCCGGCGAGTACG GCCCGCAGCTGGTGCGCCCGTCGCCGACGTCGGCCGTCATGTCGTTCGAC CACCTGGCGGCGGCGCACGCGCACCACCACCAGCACCGGCCGACGGCCAC GTCGCTGCAGAGCCAGCTCTTCAGGCCGCACCAGCAGCACCAGCAGCAGT ACGGCGGTGACGTCGGCTACGGCATGCACGGAGGCGGGGACGGCATGGCG CCGTCGTTCTTGCATGGCGGGTTCGAGTCGTCGGCGGAGGACCGGCTGCT GCTGCAGAGCATGATGCAGGCGGTGCAGACCACGATGCCCACCGGCCGCC CGGCCTCCACTAACAACGGCGGCAATGGCTACAACTTCGGCTGA
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Coding sequence (CDS) from alignment at Sh_004I18:45715..46458+

>Sh_004I18_t000020 ID=Sh_004I18_t000020|Name=Sh_004I18_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=744bp|location=Sequence derived from alignment at Sh_004I18:45715..46458+ (R570 Sugarcane cultivar)
ATGGGTGACACTGGAGCGAACATGGCCTCCTGGGGCGGGTTCTACGGGGG
CGGCGGCGCGCCGGCGACGACGGAGGCGACGGTGGTGACGACGGCGGCGG
CAGTAGCAGCGGCAGGCGGGTCGGTGTCGAGCCCGACGTCCGGCGGGTCC
GGTGGTGGCAGCCCGACCCGCGCGCAGCAGCAGCCCGGGGTCGGGGTGGA
GGGCGGGCGCGTGGGGAAGCCCGCGCGGCGGCGGTCCCGCGCGTCCCGCC
GCGCGCCCGTCACGCTGCTCAACACGGACACCTCCAACTTCCGCGCCATG
GTGCAGCAGTTCACCGGCATCCCCGCGGGGCCCTACGGCCCCGGCGGCGG
CGCGGGCGGCGGGCCCGTGATCAGCTTCGGTGGCGGCCCCGGCGAGTACG
GCCCGCAGCTGGTGCGCCCGTCGCCGACGTCGGCCGTCATGTCGTTCGAC
CACCTGGCGGCGGCGCACGCGCACCACCACCAGCACCGGCCGACGGCCAC
GTCGCTGCAGAGCCAGCTCTTCAGGCCGCACCAGCAGCACCAGCAGCAGT
ACGGCGGTGACGTCGGCTACGGCATGCACGGAGGCGGGGACGGCATGGCG
CCGTCGTTCTTGCATGGCGGGTTCGAGTCGTCGGCGGAGGACCGGCTGCT
GCTGCAGAGCATGATGCAGGCGGTGCAGACCACGATGCCCACCGGCCGCC
CGGCCTCCACTAACAACGGCGGCAATGGCTACAACTTCGGCTGA
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