Sh_004L08_t000070

Overview
NameSh_004L08_t000070
Unique NameSh_004L08_t000070
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length702
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L08contigSh_004L08:86289..93690
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteATP synthase delta chain
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L08_g000070Sh_004L08_g000070R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L08_p000070Sh_004L08_p000070R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L08_t000070 ID=Sh_004L08_t000070|Name=Sh_004L08_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=702bp
ATGGCGGCGGCGCGGCACCTCAGATCCGGTCTCCCCCTCCTCCGCGCCCA
CCTCGCATCCTCCGAATCCACGGCAGTCGCCCAGGTTTCGAGGGGCTTCG
CGTCGCAGCCGCCCAAGCCCACCGGGAAGGAGATCAAGGTTCCAGAAGCT
CTGTATGGTGGCACAGGCAACTATGCCAGTGCACTGTTCCTCACAGCAGC
TAAAGTTAACTCATTGGACAAAGTTGAGTCTGAGATTAAAACTGTTGTAG
AGGCATCCAAGAAGAGTCCGTTGTTTTCTCAATTCATAAAGGACTTGTCA
GTTCCAAAAGAGACCAGGGTGAAGGCTGTAACCGAAATATTTGCTGACGC
TGGGTTTTCAGATGTTACAAAGAATTTCTTGGCTGTCCTGGCGGACAATG
GCAGGCTGAAATATATTGAGCGCATTGCTGAGAGATTTGTTGATTTGACT
ATGGCACATAAGGGGGAGGTGAAGGTTGTGGTCAGGACAGTTATTCCACT
TCCCGAGAAGGAGGAGAAAGAACTCAAGGATACCTTGCAGGATATCCTTG
GGAAAAACAAAACTATTTTGGTTGAACAGAAGATTGACTACAGCATCATG
GGAGGATTAGTGATTGAATTCGGGCAGAAGGTATTTGATATGTCTATCAG
GACTAGGGCGAAGCAAATGGAGGCGTTCTTGAGGCAACCCCTTGAATTCT
AA
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protein sequence of Sh_004L08_p000070

>Sh_004L08_p000070 ID=Sh_004L08_p000070|Name=Sh_004L08_p000070|organism=R570 Sugarcane cultivar|type=polypeptide|length=234bp
MAAARHLRSGLPLLRAHLASSESTAVAQVSRGFASQPPKPTGKEIKVPEA
LYGGTGNYASALFLTAAKVNSLDKVESEIKTVVEASKKSPLFSQFIKDLS
VPKETRVKAVTEIFADAGFSDVTKNFLAVLADNGRLKYIERIAERFVDLT
MAHKGEVKVVVRTVIPLPEKEEKELKDTLQDILGKNKTILVEQKIDYSIM
GGLVIEFGQKVFDMSIRTRAKQMEAFLRQPLEF*
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mRNA from alignment at Sh_004L08:86289..93690+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L08_t000070 ID=Sh_004L08_t000070|Name=Sh_004L08_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=7402bp|location=Sequence derived from alignment at Sh_004L08:86289..93690+ (R570 Sugarcane cultivar)
GCCTCCCACCCCGCAACCCTAGCCTGGCGTCTCGAACTCTCGATCCTCTC TCTTTTCTCTCCTCTCCCCTCCCCCATCGCCGCCGCCGCCAGCCGCCACC ACCGCCACCTCTGCCCCTCCCTGTCCTCTCCTCCCTACGCAGCCTCCACA CGGCCAACGCTGGAGGCCTCGAGCAAGGAAGTCGCGTGGTCTCGCTGCGC AGTAGAGGGCGTAGAGGCACGCGAGATCCAGAGGTGCGCATATCGGGCGA ACCTTTTATCGGGCCCCATGGTGGTCATGGTCGGCGGAGGAGGAGGAGGC ACTGGCTCCTCCCTGCCCTCTCCTCCCCGCACCGCCTCCATCTCTGGGGC AAGGGTGAGCGCGTGGACTCCTCGCCTATGACCGCGCCCGCCTACCAGCT CGCCTCCTCGACGAGCGCATCCAGGGACACGGCTGGGGGCGGTCTCTGTC CAGGCGAGGGGCCTGAATACGGCGGCGCCGGTCACCCTTCACCACTGACT AATGAGAGGCATGTTACTCTACGACTATTCTTCTCCCCCTTTTCTCTTTC ACTCCTCTCAGATCCACTTGTCACCTTCTTCACTTTTCTCTTTTGGATCC GGCGAGATCTAGCAAGAGTACAGCTTTGACATCACCCGAGGCTGTAGAGG ACCGTCTGAGAGCGCAACGATTTGGGAGCACTCTTTCTCCTCAACCTTGA TTCGGTCGCTGCTGTACTGCGCAGACAGACACCAACTCCAACTCATTTCA TGGATGATGCCCTCTATGTGTTCGATAAAACGTACACAAGGGTTGCATGC TTTCTTTTTTCCCAGTTGAGTTTTGCTTGCTGGTTACAATCTGATGCATT ACGCGTGCTACCTGAAGGAAAGAAGTAAATCATTTCTTTTAGGTTGAGAG GTATGAAGTAAATTTCAGATCTTATACTTGGCTTAAATTGGAAAAGTGCA GTTGTCCAAGATTTTCTTCAGTAGCTAATTTCCTCATATTTATTTCAGCC TTTTTTTTTGTTAAGGGTCTGTTTGTGTGCCCACTGTCTTTTTATAAGCA TGGATGGTTAGTAAAAACTCTAGCTTATAAAGCCGCCTTATGTAATTCAG CCTCCCATATCTTATATGATTCTATGGGTTGTCTTCGACCAGCTTATTTG GGCCTTGGTCTTCTACGCATATAAGATTATTATATAATCTGGCAAAGAAA AATAAACAGGATAAATCTATGAAAATCTTTAGATGAAAATTTGCATCGTT ATTTGATCTTTTTCCTCAGTCTCTAGATGAAAGAGGTGTGTGTTTTCAGT ATACTTTTATTGTTCATGTCCTATTTGTTCAAGGCAGTGCTGGATTGTTC ATCGTTATTTGAGATTGAATTAACTGTCTTTTTTTTCTGAACAAATAAAG GTGTCCATTATATTATATCCCAATATCCCATTATAAACAGGTTCCTCTGA GATGCACCAGAGTTGAAGAGGTATTGTTTTTAGAATAATATAATCGATTG GTTAGTTTGATAATGAATGCTTTGCCCTATATGTCTTTGATTATTAATAA ACAAAACATTGGTTATCTATCTTCTTATATAGTATTAAATACCATGCTCA ATTTACATGGATTTCTGGTGGCCAGCGGGAGCAGCTTTGCAGGATGGGAG CAGACTGTACTGTTGATTGGAATGCTGGCTTAATTTAGCTCCACAAATTA TCCATATGCTGCCTTCAAGGTGGTTGATGCAGCTCCTCAGGAATAAATTA TCTTGGAATGTCTCCGATTGGTACAAAAATTTAGTTAAAGTTCTAGATCA AGAAGTCTCCAACGTCCATGACTGGGCATTCATCACGCATTCACGCTACA ATTTATATTTGTCAATATCCACAGCTAAGCATTTTTCATGCTGTAGTTTA GATGTCTGTGAAAGATATGTGCACGGTGCATGTTCTTAAAGGCTTCCTAG ACACAAATTTATGGCCTGAAAGTTTTGCATGTTCTTAAAGGCTTCCTGAA CACACATTTATGGATTGAAAGTTTTGCAGCTAAGGATTTTGTTCAAGGGC AACAAAGAGTATTTTTACATAGACGTATTGTTTTGTTAGTAGATTATTAC TGAATATCTAGGTTGCCAGATGTATAGCTTATGGTGCAAAACATATTGCC TGGAGCATTCACTGAAATTACTTCGACCCACACAAGATTATGACCTCTTT AGTTATCCTACTGTGTTGTTTGGTCAATAGCTTAGTGATAAATATATAGG TTGCCAAGAGTATAACCTGTTGCAAAACACATTGCCTGGATCATCATTGA CCGAATTTACTACCACTCTAGACTACTGGGCTTGTGTTTTATACACGGCT ATGAAGCTCTCGGTGCACTAATATTGTATCTTTTCCTACCTGATTGATCA GGTTTAAGCATTGCACAAAATATTTACCCTGATTCCTAAGATGTTTTCAA AAAATGGAACTCTTGCTTCTCATTTAAGTGTTATTGTTATACTGGGATTT TATAATTTGCTTCTTTCTTTGAGTGTTTGAAGCATAATAGTAATACTTTT ACCATGCTCCATTGCAGCCCACGGCTATAGATGCTGGCATCAATACAAAT TCTCCCCGCCATTCGATGGTCAAGACCTTGCTTTGGTTGGTTGTTGAGAT TTTCCAGTTAGTGTGTTTAAGTTACATGATGCTTAGTTATCGATGTTACA TATATTTCTCATCTGCAGCATATACAAGCATTCTTAGATGCAAAGAAACA TTCCTTTTTGTAATATGTCAGTCGCCTATTGCTCACCATCTCTGTTTGGC ATTGAAAAAAAACTTATTACTGTATTAGTCAACCAGATACTTTGGTGAGC TATTTAAATGACACCTGCTTCATGGCATCCATGGTTAAATATTGACCCAC AGTAAAAATTTTTTTTGGGATTTTTCATTTCCTTTGAAAATTAGGACATG CAGGATATGTGGTTGCACTATTTGTGTAATATGCATGTCTCTATGTATAA ATATATATCAGATTTTAGCTACCACAATCCATACAATGAAGTGAGGATAA TGTTTGTTTTCTTTAATTTATTGTAGGGCGCCCGAAGGGCGCCAAATGTT CTAGTGTACTGAATTGACTCAACTGTTTTCTCCTCTCTCTCTCTTTTTGT CTTGAAAAGATGGGAGCCGTAAGAGGCCCAAATATCTGGCTGTTAAGACC CAAATGGTCGAAATACAGCCCATGACAAAGCGGTTAAGAAACAGCTCCTT GGGCCGCACCAGAGGGCTGTGGACTTGTGGTTTGCCCTTGCTGCCCTGAG CCCCCGACGCCTTTGGGGCATAGGCGCATAGCGGTGGCCTCCTCCTTTTT CTTCGCACTCCGCAAGACCACCTCGTCCTCACCATCCCCTCGTCCCCGAT CTCCTCCCACCCGCATCCAAGGGTTTCGGTCTCTACCGCCGCGGAACGAG CCAGCGAACAGGGATGGCGGCGGCGCGGCACCTCAGATCCGGTCTCCCCC TCCTCCGCGCCCACCTCGCATCCTCCGAATCCACGGCAGTCGCCCAGGTC CTTGCTCCCTGCCCCTCTTGTGGTGGAAACAGATCCATTTCTGTCGATTT TTACTGGCCTTCCGCGCCCTGTATCCGATCTGGGATAGATCTCCTGAAGT TTTAGGGTCTTTTGCAGGGGAATTTTTAATCCATCCTTGTGATTTTTATG TCCATTTTTGTTGGGACTGACGTGTTCGTTCTAATGCAGGTTTCGAGGGG CTTCGCGTCGCAGCCGCCCAAGCCCACCGGGAAGGAGATCAAGGTATTTT GCATTCTCCTTGATGAGCGAATGTAGTTGGAAAATGGGATACGAATGCTG TTTATTATACGTCCGGGAGTGGTGAACTGGTGATTAGCTACGCTTGTAAA GGCATATGTATTATTTGCAACCAATAGGTTATGCAATTATTTCTTCATAT CCTACCTATTGTTAGGAAACCTATGCCGTAATAGGGTTGGATACCATTTG GATGTTATAGTGAACATAATGATGCACACATCAATCACTGATTAATTTAA TACACAAATGGTGTATTACTGGATGCAATTTACTTTTTTTCTGCTTTGGC CAAACAAAGTTTCTTCATGTTGAGCTTAGCTGTATTGTTTGGTACAGAAG CTGGACAACAAGATGCTTTGTATTGTTTGGGGTTACATTTCTTGGTTTCC GTAATATATCTGTGTAGTTTTATGCTGATTGCTGGATGAAAGATTCTCCT TTAAGTTAGCTCGTTCTTGGAAGCTCAAGATGTGCTTCATTTCTCTGTGC ATGTCACTGGTAATCTTATTCTTTGTCCCATTTCTGTCTTTAGGTTCCAG AAGCTCTGTATGGTGGCACAGGCAACTATGCCAGTGCACTGTTCCTCACA GCAGCTAAAGTTAACTCATTGGACAAAGTTGAGTCTGAGATTAAAACTGT TGTAGAGGCATCCAAGAAGAGTCCGTTGTTTTCTCAATTCATAAAGGACT TGTCAGTTCCAAAAGAGACCAGGGTGAAGGCTGTAACCGAAATATTTGCT GACGCTGGGTTTTCAGATGTTACAAAGAATTTCTTGGGTATGTGCCCTGC CTACTCATTTTTGTGTGCCTAATTGAGTTAAGATACAGTTTCGTGTAACA AGTTAGTGAGTTAAGATACAGTTTCGTGTAACAAGTTAGTCACTTTGATA CACTCCAGGGAAAAAAAATCTGATAAGGTGTACATGCCTTACTGATGAAC TGTGTAGAACGTATTCAGACATTTACTTGTGCTGGTTCCAATAACCTTTT CCATATTGCTACGGAGCAATTTTTTTTTGGGTAGCCATGATCTGCATAAT AATTTGCCATGTGCAGCAGTATATTTATATTAGTGTTATCAAGTTGTCCG GTTAATCGTGATTAATCATCCTAGCCAGTCCCTTGGACTCAATTAGGTAC TCCGGCTCGGTTAGAGTGACCAGAAACCAGGTCAGCCGGTTAGTCGATGA TTAATCACTATGCCGTGAGTGCAAATGCGCAACCATCCCTGCCACCACTG GTCTTCCTCTCCTCCCTTCCAGCCTTCCCAGCGGTCGTGCCTACTCCCTC CCACTGCTGCTGCCGCCGCCTCTCGTCCCTGCCTCAGCCACCAGTGCGTG GGGGAAGATCATGCAGCACACAAAGGAAGCCACCAGCTCTCTTTTCCATC ATAGCCAGGTCAAGTACTGCTGGGTCACACCTCCATGGTTCAAGGGAGCA CGAAGATGAGCTCCTCCTTTGAAGGCTAGCGATCGCTGGGTCACTCCTCT GTGCGGCTTGTCTTTCCTGAAGCTTGATGCTCTGTTTCTAGGAGCAGGTA GCAACGAACTAGGTCATACCTGTCTAGTCTTGATGCTTGATTTATACTAT ATAGTATATATAGGTCCTGGTACACACAGTGACAGCCGACGGCTAGGACC GATTAGGGTCGACTAGTCAACCTGGTCATCGACTAACCGTGACTAGTCGC CTGGTCGGTACCATGGCGACTAGGGTTGACTAGCCCATTTAATAGTGTGT TTATAAATGTGGTTGTAGAATCAATCATATGTTGTTACCAAACCCGTTAA TTGAATGCTTTCTCACAAAAAGTTGCTTTGTCTCTTGAATTTTGGTACTT GACATGATTGGTAAATGCTTATAATTTGTTCCATATTTGTCATGTATCTT GTGAGTGCCTAACTTTGTGTTGGTTTATGAAGCTGTCCTGGCGGACAATG GCAGGCTGAAATATATTGAGCGCATTGCTGAGAGATTTGTTGATTTGACT ATGGCACATAAGGGGGAGGTGAAGGTTGTGGTCAGGACAGTTATTGTAAG TTGATTTTCCATCTCTTATTCCCTCTTGCTACCATGTAAACAGTATCTGT CGAACAGCTCAGTCTCCTCGTGTGTTAAAAGAAATGTTTGTTGATGCATC TATAGTTTTCTCTTGCCTGGTAGGATGATAATATGAATGAGTTGTGATTG ATAATGTTGCTTGATGTGAATTTGCTGGAAGTCTTGTTTAGTTTAGTTTA GTTTTCCTGTTTTTATTTGGTGTTGTTTATGTTTAAATAAAACTGTAAAA TACATTAACCATACCGATAAGTTAATAAAAAAATGTAGTACCTCTAGATT ACATATGGAGAATTGCCAGGCATTGTGTCAAATTCATGACAAATTGCAAA CTAGAAAAAGTATATGTACTATTCATGACTGGTAGTGGGAGGTGCTAATG TGCTATAGTGCACATTTCTGAGTTGTCTTTAGTAATCCATATCAGCGTTT GACATGCTTAGCTGTTTTAGACCTGACATGCTTAATCATAGTCGACCAAT TAGAGGCTTGTCTTGCATATTTTGGTACAGCATTTGTAGCCATCAAATAT TGCACTCGGGTCCCTTCTTCTAGTTCTTTTGTTTTCTTGATTTTTTTCTT TCTTAGCTGGGAAAGATCGTGGGTAATGTGGACATTTTGTTTTATTGGGT TCGGATGTGTTGATTTTTTTGAGTATAGAAAGCCAATTTGCAGAGCAAGG GGGCCATATAAGTGGCGATCTTTGCATTGAAGGTTGGCAAAATCAAGCTC GACCCTGCAGTTCTCCGTGCCGCTCAAAGTTGTTCTGTTTTATGTCGGCC TCGAACAAGCTGCTACATCTCTTATCACATAATCAGGGAACAGATTCTGA TAATATTCACTTCTACAAACCGAGTACAAATCATCCCAGAATTTTAGGAA GCTTGCTAGCCCAGATTGTCGATACACAGCTTCATGTATTGTTCCTTGAG TATTCAATTTTTTGCTGACACTTGGTTCCTCTGCTATTAGCCACTTCCCG AGAAGGAGGAGAAAGAACTCAAGGATACCTTGCAGGATATCCTTGGGAAA AACAAAACTATTTTGGTTGAACAGAAGGTAACTACTTGATCCATGAGCTT CTCGAAAGTAATATCTGAAGGGATGCTCCTCAACTGTGCTTTCTCTGTTG CAGATTGACTACAGCATCATGGGAGGATTAGTGATTGAATTCGGGCAGAA GGTATTTGATATGTCTATCAGGACTAGGGCGAAGCAAATGGAGGCGTTCT TGAGGCAACCCCTTGAATTCTAACAGCCTTTTGGATAAAAACATCATCAG AATGCAGAGGCTGTGCTGTTGAAGGTTTCCCCATGTCTGCAACTTTGATC TGGCCTTTGAATAAAATGTTTCCTCTAACAAGTGAAGGGCACCGTTTTAT TGTCTTGTGGGCTAGACGCCTGCTGAACAATTTATGTTCATTTCTTTACT TAAAGAAGCATGCACCAAAAACATGAAGGATGCACGCCATGGAAAGTTTT TGAGCTCTCATTGGAACGTATGAACTCCTCACGCAATGCATCATTTTTTT TT
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Coding sequence (CDS) from alignment at Sh_004L08:86289..93690+

>Sh_004L08_t000070 ID=Sh_004L08_t000070|Name=Sh_004L08_t000070|organism=R570 Sugarcane cultivar|type=CDS|length=702bp|location=Sequence derived from alignment at Sh_004L08:86289..93690+ (R570 Sugarcane cultivar)
ATGGCGGCGGCGCGGCACCTCAGATCCGGTCTCCCCCTCCTCCGCGCCCA
CCTCGCATCCTCCGAATCCACGGCAGTCGCCCAGGTTTCGAGGGGCTTCG
CGTCGCAGCCGCCCAAGCCCACCGGGAAGGAGATCAAGGTTCCAGAAGCT
CTGTATGGTGGCACAGGCAACTATGCCAGTGCACTGTTCCTCACAGCAGC
TAAAGTTAACTCATTGGACAAAGTTGAGTCTGAGATTAAAACTGTTGTAG
AGGCATCCAAGAAGAGTCCGTTGTTTTCTCAATTCATAAAGGACTTGTCA
GTTCCAAAAGAGACCAGGGTGAAGGCTGTAACCGAAATATTTGCTGACGC
TGGGTTTTCAGATGTTACAAAGAATTTCTTGGCTGTCCTGGCGGACAATG
GCAGGCTGAAATATATTGAGCGCATTGCTGAGAGATTTGTTGATTTGACT
ATGGCACATAAGGGGGAGGTGAAGGTTGTGGTCAGGACAGTTATTCCACT
TCCCGAGAAGGAGGAGAAAGAACTCAAGGATACCTTGCAGGATATCCTTG
GGAAAAACAAAACTATTTTGGTTGAACAGAAGATTGACTACAGCATCATG
GGAGGATTAGTGATTGAATTCGGGCAGAAGGTATTTGATATGTCTATCAG
GACTAGGGCGAAGCAAATGGAGGCGTTCTTGAGGCAACCCCTTGAATTCT
AA
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