Sh_004L14_contig-1_t000020

Overview
NameSh_004L14_contig-1_t000020
Unique NameSh_004L14_contig-1_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L14_contig-1contigSh_004L14_contig-1:6512..7692
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePutative NBS-LRR-like protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_g000020Sh_004L14_contig-1_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_p000020Sh_004L14_contig-1_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L14_contig-1_t000020 ID=Sh_004L14_contig-1_t000020|Name=Sh_004L14_contig-1_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1125bp
ATGATCCTGCAACTGAGGCAGCTAAGGAAGAACATGTACAGAGGCTATTA
TGTTCTGGACACCTACAAGAGGCGTGGTGCTGCGGTGAGGCAACCCTTAA
ACTTCAACAAATTCCGGGTTGTATTTGAGAATCTAGAAGATATCATCAAT
AATATGAAAGAATTTGTTATGTTTTTAATGGATTGCCCTCGTATTTTTCG
GAAACCATATAGTACATATTTGTTCATGGAGAGGTGCATGTTTGGTCGGC
ATGCAGAGAAAGAACAGATCATTAACTTCTTGCTGCAGACTTGTGATTCG
TCTCTTAGTGTTCTTCTCATCGTTGGACCTCTAGAGATCGGGAAACGCAC
ATTGGTTGAGCATGTCTGCAAGGAGGAGAGGGTCCGCAAACAGTTCTCTC
AAATTGTTCACATCGATAGTAATGGGATGAACCAGCTTGTAACTGACGTT
CATGGTAGCAGTGAGCTAGTTGTTTCAGATGCAAGGTCCCTGATTGTTGT
TGACCTTGGTCACGACGGCGACGATGCGACATGGAGAAGACACAGCGGAG
GAAGTCTCAAGGTTGGGGACGACACAAGCGTTAACGATGAAGAAGCTTCA
CCAGTTCACCGAGATGAATACTGGTACTACTTCAAGACCATTGCATTTGG
AAGTGCAAACCCAGATGACCACCACCACCTGCTACCATCAATAGCCAGGA
AGATTGTTACACACATCGATGGTTCTTTTATAGCTGCAAATGTAATTGCA
AGGCTACTACAAGCTGATCTCAGTGAAGCTTTCTGGCGCTACGTGTCAGA
ATATGTGCATGGTGGATGTGCTCAGGACCGCATTAGAGAAGGTCGTCCGT
TCTATTTGGGTAATCATGTTTATGGCCCCCTCCTTCTGTGCTATCAATGC
CATGAAACTGCTGGGCCTCTTATGGAGAGTGAGCTTCCCAAAATAAAGGG
AGCAGACCTAATTACCAGGGGCAGTACTATCCCTAGAGAAGGGAAACTTG
AGGTGCTGCGATGGCAATCTACAATACCCCCTTATCGCAGCTACATTGCG
AGCTGTGAGGTTCAGGATCCTCAGCAGGTCATGATGCCTAAGGAGAAACA
TCTGAAGAGAAAAAGGCACGTATAG
back to top

protein sequence of Sh_004L14_contig-1_p000020

>Sh_004L14_contig-1_p000020 ID=Sh_004L14_contig-1_p000020|Name=Sh_004L14_contig-1_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=375bp
MILQLRQLRKNMYRGYYVLDTYKRRGAAVRQPLNFNKFRVVFENLEDIIN
NMKEFVMFLMDCPRIFRKPYSTYLFMERCMFGRHAEKEQIINFLLQTCDS
SLSVLLIVGPLEIGKRTLVEHVCKEERVRKQFSQIVHIDSNGMNQLVTDV
HGSSELVVSDARSLIVVDLGHDGDDATWRRHSGGSLKVGDDTSVNDEEAS
PVHRDEYWYYFKTIAFGSANPDDHHHLLPSIARKIVTHIDGSFIAANVIA
RLLQADLSEAFWRYVSEYVHGGCAQDRIREGRPFYLGNHVYGPLLLCYQC
HETAGPLMESELPKIKGADLITRGSTIPREGKLEVLRWQSTIPPYRSYIA
SCEVQDPQQVMMPKEKHLKRKRHV*
back to top

mRNA from alignment at Sh_004L14_contig-1:6512..7692+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L14_contig-1_t000020 ID=Sh_004L14_contig-1_t000020|Name=Sh_004L14_contig-1_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=1181bp|location=Sequence derived from alignment at Sh_004L14_contig-1:6512..7692+ (R570 Sugarcane cultivar)
ATGATCCTGCAACTGAGGCAGCTAAGGAAGAACATGTACAGAGGCTATTA TGTTCTGGACACCTACAAGAGGCGTGGTGCTGCGGTGAGGCAACCCTTAA ACTTCAACAAATTCCGGGTTGTATTTGAGAATCTAGAAGATATCATCAAT AATATGAAAGAATTTGTTATGTTTTTAATGGATTGCCCTCGTATTTTTCG GAAACCATATAGTACATATTTGTTCATGGAGAGGTGCATGTTTGGTCGGC ATGCAGAGAAAGAACAGATCATTAACTTCTTGCTGCAGACTTGTGATTCG TCTCTTAGTGTTCTTCTCATCGTTGGACCTCTAGAGATCGGGAAACGCAC ATTGGTTGAGCATGTCTGCAAGGAGGAGAGGGTCCGCAAACAGTTCTCTC AAATTGTTCACATCGATAGTAATGGGATGAACCAGCTTGTAACTGACGTT CATGGTAGCAGTGAGCTAGTTGTTTCAGATGCAAGGTCCCTGATTGTTGT TGACCTTGGTCACGACGGCGACGATGCGACATGGAGAAGAGTTCACTCCT TGATTTGCCAGACATATGGTGACAGAAGCAGAGTTTTACTGATCAGCACA GCGGAGGAAGTCTCAAGGTTGGGGACGACACAAGCGTTAACGATGAAGAA GCTTCACCAGTTCACCGAGATGAATACTGGTACTACTTCAAGACCATTGC ATTTGGAAGTGCAAACCCAGATGACCACCACCACCTGCTACCATCAATAG CCAGGAAGATTGTTACACACATCGATGGTTCTTTTATAGCTGCAAATGTA ATTGCAAGGCTACTACAAGCTGATCTCAGTGAAGCTTTCTGGCGCTACGT GTCAGAATATGTGCATGGTGGATGTGCTCAGGACCGCATTAGAGAAGGTC GTCCGTTCTATTTGGGTAATCATGTTTATGGCCCCCTCCTTCTGTGCTAT CAATGCCATGAAACTGCTGGGCCTCTTATGGAGAGTGAGCTTCCCAAAAT AAAGGGAGCAGACCTAATTACCAGGGGCAGTACTATCCCTAGAGAAGGGA AACTTGAGGTGCTGCGATGGCAATCTACAATACCCCCTTATCGCAGCTAC ATTGCGAGCTGTGAGGTTCAGGATCCTCAGCAGGTCATGATGCCTAAGGA GAAACATCTGAAGAGAAAAAGGCACGTATAG
back to top

Coding sequence (CDS) from alignment at Sh_004L14_contig-1:6512..7692+

>Sh_004L14_contig-1_t000020 ID=Sh_004L14_contig-1_t000020|Name=Sh_004L14_contig-1_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=1125bp|location=Sequence derived from alignment at Sh_004L14_contig-1:6512..7692+ (R570 Sugarcane cultivar)
ATGATCCTGCAACTGAGGCAGCTAAGGAAGAACATGTACAGAGGCTATTA
TGTTCTGGACACCTACAAGAGGCGTGGTGCTGCGGTGAGGCAACCCTTAA
ACTTCAACAAATTCCGGGTTGTATTTGAGAATCTAGAAGATATCATCAAT
AATATGAAAGAATTTGTTATGTTTTTAATGGATTGCCCTCGTATTTTTCG
GAAACCATATAGTACATATTTGTTCATGGAGAGGTGCATGTTTGGTCGGC
ATGCAGAGAAAGAACAGATCATTAACTTCTTGCTGCAGACTTGTGATTCG
TCTCTTAGTGTTCTTCTCATCGTTGGACCTCTAGAGATCGGGAAACGCAC
ATTGGTTGAGCATGTCTGCAAGGAGGAGAGGGTCCGCAAACAGTTCTCTC
AAATTGTTCACATCGATAGTAATGGGATGAACCAGCTTGTAACTGACGTT
CATGGTAGCAGTGAGCTAGTTGTTTCAGATGCAAGGTCCCTGATTGTTGT
TGACCTTGGTCACGACGGCGACGATGCGACATGGAGAAGACACAGCGGAG
GAAGTCTCAAGGTTGGGGACGACACAAGCGTTAACGATGAAGAAGCTTCA
CCAGTTCACCGAGATGAATACTGGTACTACTTCAAGACCATTGCATTTGG
AAGTGCAAACCCAGATGACCACCACCACCTGCTACCATCAATAGCCAGGA
AGATTGTTACACACATCGATGGTTCTTTTATAGCTGCAAATGTAATTGCA
AGGCTACTACAAGCTGATCTCAGTGAAGCTTTCTGGCGCTACGTGTCAGA
ATATGTGCATGGTGGATGTGCTCAGGACCGCATTAGAGAAGGTCGTCCGT
TCTATTTGGGTAATCATGTTTATGGCCCCCTCCTTCTGTGCTATCAATGC
CATGAAACTGCTGGGCCTCTTATGGAGAGTGAGCTTCCCAAAATAAAGGG
AGCAGACCTAATTACCAGGGGCAGTACTATCCCTAGAGAAGGGAAACTTG
AGGTGCTGCGATGGCAATCTACAATACCCCCTTATCGCAGCTACATTGCG
AGCTGTGAGGTTCAGGATCCTCAGCAGGTCATGATGCCTAAGGAGAAACA
TCTGAAGAGAAAAAGGCACGTATAG
back to top