Sh_004L14_contig-1_t000030

Overview
NameSh_004L14_contig-1_t000030
Unique NameSh_004L14_contig-1_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1812
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L14_contig-1contigSh_004L14_contig-1:73935..75832
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteU-box domain-containing protein 34
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_g000030Sh_004L14_contig-1_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_p000030Sh_004L14_contig-1_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L14_contig-1_t000030 ID=Sh_004L14_contig-1_t000030|Name=Sh_004L14_contig-1_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=1812bp
ATGAAGTGCGCGCCGGACTACTGCAACATCTACGTCGTCGCCAAGGGCAA
GTCCGTCAATGTCAGGCTCGCCAAGTGCGGCGTTCCGCCCATGCACAGTG
GCGCCGACGTCCCTTCGGACACCGACTCCCAATCGGGGCTGTACATGCGG
CGCGGCTCCAGGGGGCACCTGCCGCCGGTGATGCCTGACGCCACCAGGCG
CTCCGTTGACGGACGCACCCTGCCGGAGCTCAACACGCGGCCAGCGTTCC
GCGAGCGCTCGCTCCCGTCCTCGGCCACCAAGAACGTCGTCGTCCTGCCG
GGAAAAGACTACTCCGAGACGTCCTCCCGCTCCGCGAGGCACGAATCCTT
CGGCGGCGACCTCGACTTCGGCCCGAGCACGCGCTTCTCCTCCATAGACT
TCGGCGACAACCTCGATCTGTCCACCACCCTCACCGCCAGCCCCGCGCGG
GAGCCCATGTCACCGGCCACCGGCGCGCAGCGGGATATTGAGGTCGAGAT
GCGCCGGCTTCGGCTGGAGCTCAAGCAGACCATGGACATGTACAACGCGG
CGTGCAAGGAGGCCATCAACGCCAAGCAGCGGGCCAAGGAGATGCAGATG
ATGAAGCTGGAGGAGGCGCGTCGGCTGGAGGAGGCCAGGCACGCCGAGGA
GTCTGCTCTGGCAGTGGCCGAGATGGAGAAGGCCAAGTGCCGCGCGGCCA
TGGAGGCGGCCGAGGCGGCGCAGAGGCTGGCCGACCTGGAGGCGCAGCGG
CGCCGCAACGCCGAGGTGCGCGCGCGCCGGGAGGCCGACGAGAAGGTGCG
CGCTCTGGATGCCATCTCCAACCATGACTTCCGGTACCGCAAGTACCACA
TCGACGAGATCGAGATGGCCACGGAGCGATTCTCCGACGAGCTCAAGATC
GGCGAGGGCGGCTACGGCCCCGTCTACCGCGCCTCCCTGGACCACACCCC
CGTCGCCATCAAGGTGCTCCGCCCCGACGCGCACCAGGGGAGGAAGCAGT
TCCAGCAGGAGGTGGAGGTGCTCAGCTGCATCCGCCACCCCAACATGGTG
CTCCTCCTCGGCGCGTGCCCGGAGTACGGCTGCCTCGTGTACGAGTACAT
GGAGCACGGCAGCCTCGAGGACCGTCTGTTCCGTCGGGGCGGCACGCCGC
CGATCCCGTGGGCGCAGCGGTTCCGGATCGCGGCGGAGATCGCGACGGCG
CTGCTGTTCCTGCACCAAACAAAGCCGGAGCCGCTGGTGCACCGGGACCT
GAAGCCGGCCAACATCCTGCTGGACCGCAACTACGTGAGCAAGATCAGCG
ACGTCGGGCTGGCGCGCCTGGTGCCGCCGTCGGTGGCGGACAGCGTGACG
CAGTACCGGCTGACGGCGACGGCGGGCACCTTCTGCTACATCGACCCGGA
GTACCAGCAGACGGGCAAGCTGGGCGTCAAGTCGGACATCTACTCCCTCG
GCGTGCTCCTGCTGCAGGTGGTCACGGCGCGGCCACCCATGGGGCTCACG
CACCACGTCGAGAAGGCCATCGACGCGGGCACCTTCACGCAGATGCTCGA
CATCACCGTCAAGGACTGGCCCGTCGAGGAGGCGCTCGGCTACGCCAAGC
TCGCGCTCAAGTGCACGGAGATGCGGCGGAGGGACCGGCCGGACCTCGCC
ACCGTCATACTGCCGGAGCTCAACCGGTTAAGGAACCTCGGCCACGCTTA
CGAGGCACGCATGAGCGCCGCCGGGGCCAACGGCGGAAGTGGCGAAAGCG
GTGCCCAGGTCAGCGCGACCTCGACGACGGTGGGTGGTTCTTGGAAAACG
GCGGAGAGCTAG
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protein sequence of Sh_004L14_contig-1_p000030

>Sh_004L14_contig-1_p000030 ID=Sh_004L14_contig-1_p000030|Name=Sh_004L14_contig-1_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=604bp
MKCAPDYCNIYVVAKGKSVNVRLAKCGVPPMHSGADVPSDTDSQSGLYMR
RGSRGHLPPVMPDATRRSVDGRTLPELNTRPAFRERSLPSSATKNVVVLP
GKDYSETSSRSARHESFGGDLDFGPSTRFSSIDFGDNLDLSTTLTASPAR
EPMSPATGAQRDIEVEMRRLRLELKQTMDMYNAACKEAINAKQRAKEMQM
MKLEEARRLEEARHAEESALAVAEMEKAKCRAAMEAAEAAQRLADLEAQR
RRNAEVRARREADEKVRALDAISNHDFRYRKYHIDEIEMATERFSDELKI
GEGGYGPVYRASLDHTPVAIKVLRPDAHQGRKQFQQEVEVLSCIRHPNMV
LLLGACPEYGCLVYEYMEHGSLEDRLFRRGGTPPIPWAQRFRIAAEIATA
LLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVT
QYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVVTARPPMGLT
HHVEKAIDAGTFTQMLDITVKDWPVEEALGYAKLALKCTEMRRRDRPDLA
TVILPELNRLRNLGHAYEARMSAAGANGGSGESGAQVSATSTTVGGSWKT
AES*
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mRNA from alignment at Sh_004L14_contig-1:73935..75832-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L14_contig-1_t000030 ID=Sh_004L14_contig-1_t000030|Name=Sh_004L14_contig-1_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=1898bp|location=Sequence derived from alignment at Sh_004L14_contig-1:73935..75832- (R570 Sugarcane cultivar)
ATGAAGTGCGCGCCGGACTACTGCAACATCTACGTCGTCGCCAAGGGCAA GTCCGTCAATGTCAGGCTCGCCAAGTGCGGCGTTCCGCCCATGCACAGTG GCGCCGACGTCCCTTCGGACACCGACTCCCAATCGGGGCTGTACATGCGG CGCGGCTCCAGGGGGCACCTGCCGCCGGTGATGCCTGACGCCACCAGGCG CTCCGTTGACGGACGCACCCTGCCGGAGCTCAACACGCGGCCAGCGTTCC GCGAGCGCTCGCTCCCGTCCTCGGCCACCAAGAACGTCGTCGTCCTGCCG GGAAAAGACTACTCCGAGACGTCCTCCCGCTCCGCGAGGCACGAATCCTT CGGCGGCGACCTCGACTTCGGCCCGAGCACGCGCTTCTCCTCCATAGACT TCGGCGACAACCTCGATCTGTCCACCACCCTCACCGCCAGCCCCGCGCGG GAGCCCATGTCACCGGCCACCGGCGTGAGTGACTCATGCGTTCGTTCTTG GTCTGATTTCTTGCTATCCACCGTTGTCCGTTGCTGCTGACCAACGACAT GCGGATGCAGGCGCAGCGGGATATTGAGGTCGAGATGCGCCGGCTTCGGC TGGAGCTCAAGCAGACCATGGACATGTACAACGCGGCGTGCAAGGAGGCC ATCAACGCCAAGCAGCGGGCCAAGGAGATGCAGATGATGAAGCTGGAGGA GGCGCGTCGGCTGGAGGAGGCCAGGCACGCCGAGGAGTCTGCTCTGGCAG TGGCCGAGATGGAGAAGGCCAAGTGCCGCGCGGCCATGGAGGCGGCCGAG GCGGCGCAGAGGCTGGCCGACCTGGAGGCGCAGCGGCGCCGCAACGCCGA GGTGCGCGCGCGCCGGGAGGCCGACGAGAAGGTGCGCGCTCTGGATGCCA TCTCCAACCATGACTTCCGGTACCGCAAGTACCACATCGACGAGATCGAG ATGGCCACGGAGCGATTCTCCGACGAGCTCAAGATCGGCGAGGGCGGCTA CGGCCCCGTCTACCGCGCCTCCCTGGACCACACCCCCGTCGCCATCAAGG TGCTCCGCCCCGACGCGCACCAGGGGAGGAAGCAGTTCCAGCAGGAGGTG GAGGTGCTCAGCTGCATCCGCCACCCCAACATGGTGCTCCTCCTCGGCGC GTGCCCGGAGTACGGCTGCCTCGTGTACGAGTACATGGAGCACGGCAGCC TCGAGGACCGTCTGTTCCGTCGGGGCGGCACGCCGCCGATCCCGTGGGCG CAGCGGTTCCGGATCGCGGCGGAGATCGCGACGGCGCTGCTGTTCCTGCA CCAAACAAAGCCGGAGCCGCTGGTGCACCGGGACCTGAAGCCGGCCAACA TCCTGCTGGACCGCAACTACGTGAGCAAGATCAGCGACGTCGGGCTGGCG CGCCTGGTGCCGCCGTCGGTGGCGGACAGCGTGACGCAGTACCGGCTGAC GGCGACGGCGGGCACCTTCTGCTACATCGACCCGGAGTACCAGCAGACGG GCAAGCTGGGCGTCAAGTCGGACATCTACTCCCTCGGCGTGCTCCTGCTG CAGGTGGTCACGGCGCGGCCACCCATGGGGCTCACGCACCACGTCGAGAA GGCCATCGACGCGGGCACCTTCACGCAGATGCTCGACATCACCGTCAAGG ACTGGCCCGTCGAGGAGGCGCTCGGCTACGCCAAGCTCGCGCTCAAGTGC ACGGAGATGCGGCGGAGGGACCGGCCGGACCTCGCCACCGTCATACTGCC GGAGCTCAACCGGTTAAGGAACCTCGGCCACGCTTACGAGGCACGCATGA GCGCCGCCGGGGCCAACGGCGGAAGTGGCGAAAGCGGTGCCCAGGTCAGC GCGACCTCGACGACGGTGGGTGGTTCTTGGAAAACGGCGGAGAGCTAG
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Coding sequence (CDS) from alignment at Sh_004L14_contig-1:73935..75832-

>Sh_004L14_contig-1_t000030 ID=Sh_004L14_contig-1_t000030|Name=Sh_004L14_contig-1_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=1812bp|location=Sequence derived from alignment at Sh_004L14_contig-1:73935..75832- (R570 Sugarcane cultivar)
ATGAAGTGCGCGCCGGACTACTGCAACATCTACGTCGTCGCCAAGGGCAA
GTCCGTCAATGTCAGGCTCGCCAAGTGCGGCGTTCCGCCCATGCACAGTG
GCGCCGACGTCCCTTCGGACACCGACTCCCAATCGGGGCTGTACATGCGG
CGCGGCTCCAGGGGGCACCTGCCGCCGGTGATGCCTGACGCCACCAGGCG
CTCCGTTGACGGACGCACCCTGCCGGAGCTCAACACGCGGCCAGCGTTCC
GCGAGCGCTCGCTCCCGTCCTCGGCCACCAAGAACGTCGTCGTCCTGCCG
GGAAAAGACTACTCCGAGACGTCCTCCCGCTCCGCGAGGCACGAATCCTT
CGGCGGCGACCTCGACTTCGGCCCGAGCACGCGCTTCTCCTCCATAGACT
TCGGCGACAACCTCGATCTGTCCACCACCCTCACCGCCAGCCCCGCGCGG
GAGCCCATGTCACCGGCCACCGGCGCGCAGCGGGATATTGAGGTCGAGAT
GCGCCGGCTTCGGCTGGAGCTCAAGCAGACCATGGACATGTACAACGCGG
CGTGCAAGGAGGCCATCAACGCCAAGCAGCGGGCCAAGGAGATGCAGATG
ATGAAGCTGGAGGAGGCGCGTCGGCTGGAGGAGGCCAGGCACGCCGAGGA
GTCTGCTCTGGCAGTGGCCGAGATGGAGAAGGCCAAGTGCCGCGCGGCCA
TGGAGGCGGCCGAGGCGGCGCAGAGGCTGGCCGACCTGGAGGCGCAGCGG
CGCCGCAACGCCGAGGTGCGCGCGCGCCGGGAGGCCGACGAGAAGGTGCG
CGCTCTGGATGCCATCTCCAACCATGACTTCCGGTACCGCAAGTACCACA
TCGACGAGATCGAGATGGCCACGGAGCGATTCTCCGACGAGCTCAAGATC
GGCGAGGGCGGCTACGGCCCCGTCTACCGCGCCTCCCTGGACCACACCCC
CGTCGCCATCAAGGTGCTCCGCCCCGACGCGCACCAGGGGAGGAAGCAGT
TCCAGCAGGAGGTGGAGGTGCTCAGCTGCATCCGCCACCCCAACATGGTG
CTCCTCCTCGGCGCGTGCCCGGAGTACGGCTGCCTCGTGTACGAGTACAT
GGAGCACGGCAGCCTCGAGGACCGTCTGTTCCGTCGGGGCGGCACGCCGC
CGATCCCGTGGGCGCAGCGGTTCCGGATCGCGGCGGAGATCGCGACGGCG
CTGCTGTTCCTGCACCAAACAAAGCCGGAGCCGCTGGTGCACCGGGACCT
GAAGCCGGCCAACATCCTGCTGGACCGCAACTACGTGAGCAAGATCAGCG
ACGTCGGGCTGGCGCGCCTGGTGCCGCCGTCGGTGGCGGACAGCGTGACG
CAGTACCGGCTGACGGCGACGGCGGGCACCTTCTGCTACATCGACCCGGA
GTACCAGCAGACGGGCAAGCTGGGCGTCAAGTCGGACATCTACTCCCTCG
GCGTGCTCCTGCTGCAGGTGGTCACGGCGCGGCCACCCATGGGGCTCACG
CACCACGTCGAGAAGGCCATCGACGCGGGCACCTTCACGCAGATGCTCGA
CATCACCGTCAAGGACTGGCCCGTCGAGGAGGCGCTCGGCTACGCCAAGC
TCGCGCTCAAGTGCACGGAGATGCGGCGGAGGGACCGGCCGGACCTCGCC
ACCGTCATACTGCCGGAGCTCAACCGGTTAAGGAACCTCGGCCACGCTTA
CGAGGCACGCATGAGCGCCGCCGGGGCCAACGGCGGAAGTGGCGAAAGCG
GTGCCCAGGTCAGCGCGACCTCGACGACGGTGGGTGGTTCTTGGAAAACG
GCGGAGAGCTAG
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