Sh_004L14_contig-1_t000040

Overview
NameSh_004L14_contig-1_t000040
Unique NameSh_004L14_contig-1_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1602
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L14_contig-1contigSh_004L14_contig-1:77171..81587
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteLycopene epsilon cyclase1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_g000040Sh_004L14_contig-1_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_p000040Sh_004L14_contig-1_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L14_contig-1_t000040 ID=Sh_004L14_contig-1_t000040|Name=Sh_004L14_contig-1_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1602bp
ATGGGCCTCTCGGGCGCGACGATCTCCGCTCCGCTCGGCTGCCGTGGGCT
GCCGCGCGGGGCGGTCGGCGGAGGTAAGGCGCGGAAGGCGGAGGCGGAGA
GGTGGCGGCGGGCGGGCTGGAGCCGACGCGTGGGTGGACCGAAGGTGAGG
TGCGTGGCGACCGAGAAGCACGACGAGGCGGCGGCGGTCGGCGTGGAGTT
CGCGGACGAGGAGGACTACCGCAAGGGGGGCGGCGGCGAGCTGCTTTACG
TGCAAATGCAGGCCACCAAGCCCATGGAAAGCCAGTCCAAGATCGCTTCC
AAGCTGTTGCCCATATCTGATGAAAATACGGTACTTGATTTGGTTATCAT
TGGTTGTGGTCCTGCTGGTCTTTCTCTAGCTTCAGAGTCAGCTAAGAAAG
GTCTCACCGTCGGTCTCATTGGGCCTGACCTTCCATTCACAAATAACTAT
GGTGTGTGGGAGGATGAGTTTAACGATCTTGGTCTAGAGAGTTGTATCGA
GCACGTCTGGAAGGATACTATTGTCTACCTAGACAATAACAAGCCCATAC
TGATTGGCCGTTCTTATGGCAGGGTGCACCGTGACTTGCTCCATGAGGAG
CTGCTGAGAAGATGCTATGAAGCTGGCGTGACATACCTGAACTCCAAAGT
GGACAAGATCATAGAATCTCCAGATGGACACAGAGTAGTCTGTTGTGATA
AGGGTCGTGAGATAATTTGCAGGCTTGCCATTGTTGCTTCGGGGGCAGCA
TCTGGTAGGCTTCTAGAGTATGAGGTTGGGGGTCCCCGTGTTTGCGTGCA
GACTGCATACGGAGTAGAAGTTGAGGTGGAAAATAGTCCATATGATCCCA
GCTTAATGGTTTTCATGGACTACAGAGATTGTTTCAAAGAGGAATTTTCA
CACACTGAACAAGAAAATCCCACTTTCCTGTATGCTATGCCCATGTCATC
CACACGAGTTTTCTTTGAGGAAACATGCTTAGCTTCTAAAGATGCTATGT
CATTTGATCTACTTAAGAAGAGGCTGATGTATCGGTTAAATATGATGGGA
GTTCGTATCCTGAAAGTTTACGAGGAGGAATGGTCCTACATTCCTGTTGG
AGGGTCCTTACCAAACACAGATCAGAAAAATCTTGCATTTGGTGCTGCAG
CAAGTATGGTGCATCCTGCAACAGGGTACTCAGTGGTCAGATCTTTGTCT
GAGGCTCCAAGATATGCTTCTGTGATATCCGAAATCTTAAGAAACCGAGT
TCCTGCAGAATATTTGCTTGGAAATTCTCAAAATTACAGTCCATCAATGC
TTGCATGGAGAACACTATGGCCTCAAGAAAGGAAACGCCAGCGATCCTTC
TTCCTTTTCGGATTAGCGTTGATAATCCAACTGAATAATGAAGGCATACA
AACATTCTTTGAAGCCTTTTTCAGGGTGCCGAAATGGATGTGGCGGGGAT
TTCTTGGCTCAACCCTTTCATCCGTCGATCTCATACTATTTTCATTCTAC
ATGTTTGCCATAGCTCCAAATCAATTGCGAATGAACCTCGTCAGACATCT
CCTCTCTGACCCGACTGGATCAACCATGATCAAGACCTACCTGACCTTAT
AA
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protein sequence of Sh_004L14_contig-1_p000040

>Sh_004L14_contig-1_p000040 ID=Sh_004L14_contig-1_p000040|Name=Sh_004L14_contig-1_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=534bp
MGLSGATISAPLGCRGLPRGAVGGGKARKAEAERWRRAGWSRRVGGPKVR
CVATEKHDEAAAVGVEFADEEDYRKGGGGELLYVQMQATKPMESQSKIAS
KLLPISDENTVLDLVIIGCGPAGLSLASESAKKGLTVGLIGPDLPFTNNY
GVWEDEFNDLGLESCIEHVWKDTIVYLDNNKPILIGRSYGRVHRDLLHEE
LLRRCYEAGVTYLNSKVDKIIESPDGHRVVCCDKGREIICRLAIVASGAA
SGRLLEYEVGGPRVCVQTAYGVEVEVENSPYDPSLMVFMDYRDCFKEEFS
HTEQENPTFLYAMPMSSTRVFFEETCLASKDAMSFDLLKKRLMYRLNMMG
VRILKVYEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLS
EAPRYASVISEILRNRVPAEYLLGNSQNYSPSMLAWRTLWPQERKRQRSF
FLFGLALIIQLNNEGIQTFFEAFFRVPKWMWRGFLGSTLSSVDLILFSFY
MFAIAPNQLRMNLVRHLLSDPTGSTMIKTYLTL*
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mRNA from alignment at Sh_004L14_contig-1:77171..81587-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L14_contig-1_t000040 ID=Sh_004L14_contig-1_t000040|Name=Sh_004L14_contig-1_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=4417bp|location=Sequence derived from alignment at Sh_004L14_contig-1:77171..81587- (R570 Sugarcane cultivar)
GGCACAGCAGCAGCGGCCAACTCCTCTCTGCCAGTGTCTCCTCGCCGCCG CCGCCGCAGCCGACCAATCACCGTGCAATTCGAAGCAAGAGAGCCCCATC AGGAGAAGAGATAGTGAGAGAGCGAGAGCCCGAGGAGGAGCGGCGCCATG GGCCTCTCGGGCGCGACGATCTCCGCTCCGCTCGGCTGCCGTGGGCTGCC GCGCGGGGCGGTCGGCGGAGGTAAGGCGCGGAAGGCGGAGGCGGAGAGGT GGCGGCGGGCGGGCTGGAGCCGACGCGTGGGTGGACCGAAGGTGAGGTGC GTGGCGACCGAGAAGCACGACGAGGCGGCGGCGGTCGGCGTGGAGTTCGC GGACGAGGAGGACTACCGCAAGGGGGGCGGCGGCGAGCTGCTTTACGTGC AAATGCAGGCCACCAAGCCCATGGAAAGCCAGTCCAAGATCGCTTCCAAG GTGATTAGATTCCTAATATCACTTGCTATGATCATGATTAACACGAAGGA AATAAATTATAAATTTCGCCCCCTTTCTTGCAGTACTATTTGGGTATTTA TTACAGGATGAAATCCATAGCATCGTCATGCACCTACCGTGTATTTAATT TGACGTACATCAAGCGTTCTGTTTCTCATTTTCTTTCCAACGGCATACCA TTCTTTACCATTTGAAAGTACAAGCCATAACATTTTTTATGCTACATTAT TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTATTATTATTATTATTATTATTATTATTATCCATCAGTAATTGTTGCTT ACCTTTTCCGGGAGAAAAACCATAGCCAAGTAGTCCTGCAGCCGATCGTT GTCCGGGCTATCTTCAAAGAGCATAGAAAAATACTGCACATTTCAGTATG GAACCAAGATTGTTGTCCTGCAGCCGTACTTCACGTGCTTTGGCTACAAC TACAAGGACGTCCATTGAAAAGAAGGGTGATCGCCTAGTAGTAGGCAGTA GGCACGGTGTTTGTCCTTCTTGGCTAATATGGATGGTTTTGCGTTCCAGA TGTTTCCAGTCAATAGATTGACGTAATTTATCCCCGTTTTCCAGAAGAAT GGTGCCTATTTGGAAATGTATGTAATTAAAATATTCTGAAAATGTATTTC ATGAGAAAATGACAGTATCTGACAATACTGCACTGTACTTAGCCGTCGAT TTTGACAATTCGAATCAGGAACTGTCATAACGCGCAATCTATTGTGATTC GTGGGAACAAAGGCTGTGTTTAGTTTGCGAAAAGAAAATTTTTGTGTCAC ATCGGATGTGTCGGAAGGATGTCGGGAGAGGTTTTCGGATATTAATAAAA AAACAAATTACAGAACATATCAGGAAACTGCGAGACGAATCTAATGATAC TAATTAATCCGTCATTAGCACATGGTGGTTACTGTAGCACTTAAGGCTTT TCATGGACTAATTAGACTTAAAATATTCGTCTCGCGATTTCCCCGAGAAC TGTGCAATTAGTTTTTTTTTTTGTCTACGTTTAGTACTCCATGCATGTGT CCAAACATTCGATGTGATGGGTGAGGGAATTTTTTTTTGCGAATTAAACC AGGCCAAAGAATGCTCACGTACTTCTCTGGACTATTCTAACAAGATAAGT CAGTTATACGAACTAGGGTGCCAGGACATTGACGACCGTTCTTTTTTGTG CTCACTAGTTCCTTACATGGTAATATGGCATGAGTATGACGGTAGCTTGT TGCCTGATCACACAGTAATGTTGAGTTCTCTGGTTGTACACGCATTGGCA TGTCATTCCCAGTCTAATGTCACATAGCTGACTTGCTATAATTTGAGCAG TCAAGTGGAGTACTCTAGGGTCTAGGCACAGTTAATTCCTCAAAAACATG GAATTTTCTATAGGACTGCACAGAACAGCAGAGCTTCAACTGGAGCCTTT GTGCCATTATTTTTTTTTCTGTACCATAAACTATGCACCACACTAATGCT GTTTTTTTTAAAACTATCTTTTTTCTTGCAAGGTGAGGTAACTAATGTTC AAATTTACATGGTATTAGTGTAACTGTTTTTTTTAATATAAAGAAGTTGT AACAGTATCTCAAAGAAAATTAACTATATAGTCTTATGTTTTGTTTGCAG CTGTTGCCCATATCTGATGAAAATACGGTACTTGATTTGGTTATCATTGG TTGTGGTCCTGCTGGTCTTTCTCTAGCTTCAGAGTCAGCTAAGAAAGGTC TCACCGTCGGTCTCATTGGGCCTGACCTTCCATTCACAAATAACTATGGT GTGTGGGAGGATGAGTTTAACGGTATGCTATTATTTGCGTTACTAAAATG CAGTGTCTGCATGACATCACTGTCAGCATAACTTAACATGATGGTACTTA TTTTTCTCGTTTACTGTCCAGATCTTGGTCTAGAGAGTTGTATCGAGCAC GTCTGGAAGGATACTATTGTCTACCTAGACAATAACAAGCCCATACTGAT TGGCCGTTCTTATGGCAGGGTGCACCGTGACTTGCTCCATGAGGAGCTGC TGAGAAGGTAAATCTTCATGTAGCAATATTGGGATTCAGAAGTATCTTTT CCAAGCATGGTGATATAATATAATTGACAAGTAGCAACACTTAAATAATT CGCAGATGCTATGAAGCTGGCGTGACATACCTGAACTCCAAAGTGGACAA GATCATAGAATCTCCAGATGGACACAGAGTAGTCTGTTGTGATAAGGGTC GTGAGATAATTTGCAGGCTTGCCATTGTTGCTTCGGGGGCAGCATCTGGT AGGCTTCTAGAGTATGAGGTTGGGGGTCCCCGTGTTTGCGTGCAGACTGC ATACGGAGTAGAAGTTGAGGTACACAAAGACTAAAGAACATGTTCATTTT ATTTTTTTTGTTAAAATTTCTTTCACAAATTAGACAGACCAGTTTGCTCA ATAAATTTCTAGATGAAAATTTCAATATATCATTTAGGTACTAGATGTTC GTTATTTCAAAATTGTTTGAAAATTTCAGGTGGAAAATAGTCCATATGAT CCCAGCTTAATGGTTTTCATGGACTACAGAGATTGTTTCAAAGAGGAATT TTCACACACTGAACAAGAAAATCCCACTTTCCTGTATGCTATGCCCATGT CATCCACACGAGTTTTCTTTGAGGTTGGTACAGAGTTTTTATTACCTCTG TGATTCTGCAGCCAACACTTCCCATACTTCGAAGTTTCAAAATTTGAGAC AAAATACCTTATCACAGGAAACATGCTTAGCTTCTAAAGATGCTATGTCA TTTGATCTACTTAAGAAGAGGCTGATGTATCGGTTAAATATGATGGGAGT TCGTATCCTGAAAGTTTACGAGGAGGTAAGAAGTTAAGGGTCGACAATTC TTAATTTATCACTCATTTATAGTCTGAAAAATAAACTGAAAAATGTTCTT GGTTTCAGGAATGGTCCTACATTCCTGTTGGAGGGTCCTTACCAAACACA GATCAGAAAAATCTTGCATTTGGTGCTGCAGCAAGTATGGTGCATCCTGC AACAGGTACAGACAAATAATCAATTTTTCACACACCAGTTTCTTCCTTGC GTATATTGACAACGTTTCGCAAAATCCATAGGGTACTCAGTGGTCAGATC TTTGTCTGAGGCTCCAAGATATGCTTCTGTGATATCCGAAATCTTAAGAA ACCGAGTTCCTGCAGAATATTTGCTTGGAAATTCTCAAAATTACAGTCCA TCAATGCTTGGTAAGCATTCTTGTGGTATTTATTCAACTTGGTTGTACTA TTACACAGCTCCAGGACAAGAACAGTTTTACTGTGTAAAGTCCAGACAAG TTAGCAAAACTTTATGCGACTAATTGTTATATGATGTTTCAGCATGGAGA ACACTATGGCCTCAAGAAAGGAAACGCCAGCGATCCTTCTTCCTTTTCGG ATTAGCGTTGATAATCCAACTGAATAATGAAGGCATACAAACATTCTTTG AAGCCTTTTTCAGGGTGCCGAAATGGTAGTTGCACTTTTTGCCCTGTTTC AGTCTATTTTCAGAGAAATTCAGTGTGTTGGAGGTTACTGCCTCCATAAC GTTTTGATAACCACTGTTTTTCCTTCAACAGGATGTGGCGGGGATTTCTT GGCTCAACCCTTTCATCCGTCGATCTCATACTATTTTCATTCTACATGTT TGCCATAGCTCCAAATCAATTGCGAATGAACCTCGTCAGACATCTCCTCT CTGACCCGACTGGATCAACCATGATCAAGACCTACCTGACCTTATAAAAC CTTCTGCATCAGGCTGCAAGCCTGCAAGAACTCTTAGAAACTGTACAGTT TTGTAGTTGTACATAAGTTAGAGGGGATCTGGTGGTTCCTTTTCTTATTC CCGTATGGCGGCGGATC
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Coding sequence (CDS) from alignment at Sh_004L14_contig-1:77171..81587-

>Sh_004L14_contig-1_t000040 ID=Sh_004L14_contig-1_t000040|Name=Sh_004L14_contig-1_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=1602bp|location=Sequence derived from alignment at Sh_004L14_contig-1:77171..81587- (R570 Sugarcane cultivar)
ATGGGCCTCTCGGGCGCGACGATCTCCGCTCCGCTCGGCTGCCGTGGGCT
GCCGCGCGGGGCGGTCGGCGGAGGTAAGGCGCGGAAGGCGGAGGCGGAGA
GGTGGCGGCGGGCGGGCTGGAGCCGACGCGTGGGTGGACCGAAGGTGAGG
TGCGTGGCGACCGAGAAGCACGACGAGGCGGCGGCGGTCGGCGTGGAGTT
CGCGGACGAGGAGGACTACCGCAAGGGGGGCGGCGGCGAGCTGCTTTACG
TGCAAATGCAGGCCACCAAGCCCATGGAAAGCCAGTCCAAGATCGCTTCC
AAGCTGTTGCCCATATCTGATGAAAATACGGTACTTGATTTGGTTATCAT
TGGTTGTGGTCCTGCTGGTCTTTCTCTAGCTTCAGAGTCAGCTAAGAAAG
GTCTCACCGTCGGTCTCATTGGGCCTGACCTTCCATTCACAAATAACTAT
GGTGTGTGGGAGGATGAGTTTAACGATCTTGGTCTAGAGAGTTGTATCGA
GCACGTCTGGAAGGATACTATTGTCTACCTAGACAATAACAAGCCCATAC
TGATTGGCCGTTCTTATGGCAGGGTGCACCGTGACTTGCTCCATGAGGAG
CTGCTGAGAAGATGCTATGAAGCTGGCGTGACATACCTGAACTCCAAAGT
GGACAAGATCATAGAATCTCCAGATGGACACAGAGTAGTCTGTTGTGATA
AGGGTCGTGAGATAATTTGCAGGCTTGCCATTGTTGCTTCGGGGGCAGCA
TCTGGTAGGCTTCTAGAGTATGAGGTTGGGGGTCCCCGTGTTTGCGTGCA
GACTGCATACGGAGTAGAAGTTGAGGTGGAAAATAGTCCATATGATCCCA
GCTTAATGGTTTTCATGGACTACAGAGATTGTTTCAAAGAGGAATTTTCA
CACACTGAACAAGAAAATCCCACTTTCCTGTATGCTATGCCCATGTCATC
CACACGAGTTTTCTTTGAGGAAACATGCTTAGCTTCTAAAGATGCTATGT
CATTTGATCTACTTAAGAAGAGGCTGATGTATCGGTTAAATATGATGGGA
GTTCGTATCCTGAAAGTTTACGAGGAGGAATGGTCCTACATTCCTGTTGG
AGGGTCCTTACCAAACACAGATCAGAAAAATCTTGCATTTGGTGCTGCAG
CAAGTATGGTGCATCCTGCAACAGGGTACTCAGTGGTCAGATCTTTGTCT
GAGGCTCCAAGATATGCTTCTGTGATATCCGAAATCTTAAGAAACCGAGT
TCCTGCAGAATATTTGCTTGGAAATTCTCAAAATTACAGTCCATCAATGC
TTGCATGGAGAACACTATGGCCTCAAGAAAGGAAACGCCAGCGATCCTTC
TTCCTTTTCGGATTAGCGTTGATAATCCAACTGAATAATGAAGGCATACA
AACATTCTTTGAAGCCTTTTTCAGGGTGCCGAAATGGATGTGGCGGGGAT
TTCTTGGCTCAACCCTTTCATCCGTCGATCTCATACTATTTTCATTCTAC
ATGTTTGCCATAGCTCCAAATCAATTGCGAATGAACCTCGTCAGACATCT
CCTCTCTGACCCGACTGGATCAACCATGATCAAGACCTACCTGACCTTAT
AA
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