Sh_004L14_contig-1_t000050

Overview
NameSh_004L14_contig-1_t000050
Unique NameSh_004L14_contig-1_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length2124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L14_contig-1contigSh_004L14_contig-1:103171..108097
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Noteweakly similar to Os01g0580800 protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_g000050Sh_004L14_contig-1_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_p000050Sh_004L14_contig-1_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L14_contig-1_t000050 ID=Sh_004L14_contig-1_t000050|Name=Sh_004L14_contig-1_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=2124bp
ATGGAGGGCGGCGAGGGTGGAGTAGGGCCTGCTGGCCTGAGATTCCTTCT
CCAGTTCGATCCGGGAAAGCCCGGATCGTTCGACCGCACGCTGCTCGGCT
TCTCGCTCTCCGCGCTCTTCAGCCGCCTTGTTGGATGGAGCAAGGACGGC
CAGCGGAGAGGAGGAGGAGGATCCACGGCGATCGCGGTGGAGGGTGGGGG
CGACGACTACGGGAACGCCGCCGTGTCCGCCGCCGCGCTTGCCGCCGCGG
CCTCTCTCTGCCTCGCGGCGATGTACGCGTCTGATCAGCGGCCTCGCCGC
CGCCGCCGCCGGCAGCCGGCGGCCGCTCTGCCTGCGCCGAGTTCAGCTCC
GCGGCCTCGCGCTCTTCCTGCTCCACATGATGGGCTCAGGATTCTGTCGT
CAAACCCAGACGACGAACCTCCGGACAACGTGATTCACGGCGCGTCGATC
GGCGCCGGAGACGACGACGAGCCGGATATCGTCGCGCGAGTGGAGATGGA
GGCTATGCCGGCCCCAGTAGTCGCCGCAAATGCCGACGACGAAACCGAAA
CAGACCCGGACCATCCGGAGGAACAACAAGAAGAAGAACGGCAGGAGCTC
CAGCGGCTGAGGGAGCTGTGGCTGTCGCTGCTGGAGCGGGAGCAGAGGCT
GGAGCTCCGTCTGCGGGAGCTCGAGGGCCTCCGGTCGCAGGAGGCCGAGG
CCACCGTGCGGGAACTCGAGAGCCGCGTCGCCGCCGCCGACGCGGAGACG
CGGCTCTTGCGGCTCAAGGTCTCCACGCTGCAGGAGGACAACGGCAGGCT
CAGGGCGCAGGTGGAGGAGCTCGACACCGCCCGCGCAGAGCTGGCGCGCG
CCAAGGAGAAGCTGCGCGCGGTCAAGGCGCGGGTGGAGGGAGAGCAGGAG
GAGGCGCGGCGCGAGGCGGCGGCGCTCCGGGCGAGGGTGGTGGAGCTCGA
GAGCGGTGGCGAGGAGAGGGCCGCCGCGCTGGCGACGGAGGTCGCCGAGC
TGCGGAAGGCGAACGCCGCCCTGGAGGAGGACAACATGGAGCTCGCCCTC
CGGCTGCAGGACGCGGAGCAGGCTGCGTCCGCCTCGGTTAATCTGGTTCC
TGAGGAGGGCATGGTTGAGGAGATGACGTACCTGAGGGAGAGCAACGAGA
GGCTGACGAGGCAGATCGAGCAGCTGCGCAACGACCACTGCGCGCACGTC
GAGGAGCTCGTCTACCTCAAGTGGGTCAACGCCTGCCTCCGCCATGAGCT
CCTCCGTAACCATGATGGCGGCCACCCCACAGCCGAGCAACAGGGCCACA
GCACTGACAACCGCCGCGTCGGCTCCAGAGATGACCTGTCATCGGCCCTG
GAGCTGAGCAAGAGCACGAGCTTCCGGTCCAGCGAGAGGGCCAAGCAGCT
CATGCTGAGGTACGGTCACCCCGGCCTCGACGGCTTCGACCCTGCCCTCT
TCTCCCCGCTGCACGAGTCAGTCGACGGCGACGGCTACGTGCGATCGCCG
GCGAGCAACTACGAGCCTCAGCGGAGCCCTTGTTCTAGGCCCGGGACGGG
GACGGCGATGGCCGCCTCCCCCGCCGCAGCACTGGGGAAGAAAGCCGGGC
CGCGCAAGCTCAAGCTTCTCGGTAACATCAAGAAGCTGCTGCCAGGCGGC
AAGAGAAGCCACTCATCAAGCCACGTGCACGGGCACGGGCACGGGCATGA
CCACGCCGGCCGCGATGGCAGGAAGGCGCCGGCTCCGAGGGACGAGTATC
TCGAGAAGGCCATGCAGTGGCTGTCGACCCACGACGTGCTCGACGGCGAC
CACTCGTACGAGAGCACGCCGCTGTCGTCGTGCGAGAGGACGCCGCGGAG
CAGCGTGATGACCAACACAACCGTGGACTCGCGCGCCCGCGTCGGTGGCG
TCGGCGGCGGCCACAGCGAGCGTGGGGAGACGGCGCGGTCGGAGGCGGAG
CCGATCTTGGCAAGGTCGAAGAGCGACGCCGGCGGAGCATACGGGCGGGA
GGGGAGCAGGTACCACGCGCTCAGACCTGACCACCCGGCCAGCGAAGCGG
ACGGGTTCCGTGCGCCGGAGAAGCGGGAGTCGAGGAGGCGGTCGGAGGAG
CTGAGGAGCCCGGCGGTGGCATAG
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protein sequence of Sh_004L14_contig-1_p000050

>Sh_004L14_contig-1_p000050 ID=Sh_004L14_contig-1_p000050|Name=Sh_004L14_contig-1_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=708bp
MEGGEGGVGPAGLRFLLQFDPGKPGSFDRTLLGFSLSALFSRLVGWSKDG
QRRGGGGSTAIAVEGGGDDYGNAAVSAAALAAAASLCLAAMYASDQRPRR
RRRRQPAAALPAPSSAPRPRALPAPHDGLRILSSNPDDEPPDNVIHGASI
GAGDDDEPDIVARVEMEAMPAPVVAANADDETETDPDHPEEQQEEERQEL
QRLRELWLSLLEREQRLELRLRELEGLRSQEAEATVRELESRVAAADAET
RLLRLKVSTLQEDNGRLRAQVEELDTARAELARAKEKLRAVKARVEGEQE
EARREAAALRARVVELESGGEERAAALATEVAELRKANAALEEDNMELAL
RLQDAEQAASASVNLVPEEGMVEEMTYLRESNERLTRQIEQLRNDHCAHV
EELVYLKWVNACLRHELLRNHDGGHPTAEQQGHSTDNRRVGSRDDLSSAL
ELSKSTSFRSSERAKQLMLRYGHPGLDGFDPALFSPLHESVDGDGYVRSP
ASNYEPQRSPCSRPGTGTAMAASPAAALGKKAGPRKLKLLGNIKKLLPGG
KRSHSSSHVHGHGHGHDHAGRDGRKAPAPRDEYLEKAMQWLSTHDVLDGD
HSYESTPLSSCERTPRSSVMTNTTVDSRARVGGVGGGHSERGETARSEAE
PILARSKSDAGGAYGREGSRYHALRPDHPASEADGFRAPEKRESRRRSEE
LRSPAVA*
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mRNA from alignment at Sh_004L14_contig-1:103171..108097+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L14_contig-1_t000050 ID=Sh_004L14_contig-1_t000050|Name=Sh_004L14_contig-1_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=4927bp|location=Sequence derived from alignment at Sh_004L14_contig-1:103171..108097+ (R570 Sugarcane cultivar)
ATGGAGGGCGGCGAGGGTGGAGTAGGGCCTGCTGGCCTGAGATTCCTTCT CCAGTTCGATCCGGGAAAGCCCGGATCGTTCGACCGCACGCTGCTCGGCT TCTCGCTCTCCGCGCTCTTCAGCCGCCTTGTTGGATGGAGCAAGGACGGC CAGCGGAGAGGAGGAGGAGGATCCACGGCGATCGCGGTGGAGGGTGGGGG CGACGACTACGGGAACGCCGCCGTGTCCGCCGCCGCGCTTGCCGCCGCGG CCTCTCTCTGCCTCGCGGCGATGTACGCGTCTGATCAGCGGCCTCGCCGC CGCCGCCGCCGGCAGCCGGCGGCCGCTCTGCCTGCGCCGAGTTCAGGTCC GCAATTCGAGTAATCCGTTTTGCTTTGTTCGCCGTTTAGATTTGACGCTG GCTTTGATTCTGTTCCCTATGGATTTTTTTTCTTGCAGCTCCGCGGCCTC GCGCTCTTCCTGCTCCACATGATGGGCTCAGGATTCTGTCGTCAAACCCA GACGTGAGTTCTCGATCCCGTCAGATTGGTGACGCCGACTTCACAGAGAA GCTTTTGGACTACCTAGAGCCATGATTGATATGATCTTCAAATTCCAGGA CGAACCTCCGGACAACGTGATTCACGGCGCGTCGATCGGCGCCGGAGACG ACGACGAGCCGGATATCGTCGCGCGAGTGGAGATGGAGGCTATGCCGGCC CCAGTAGTCGCCGCAAATGCCGACGACGAAACCGAAACAGACCCGGACCA TCCGGAGGAACAACAAGAAGAAGAACGGCAGGAGCTCCAGCGGCTGAGGG AGCTGTGGCTGTCGCTGCTGGAGCGGGAGCAGAGGCTGGAGCTCCGTCTG CGGGAGCTCGAGGGCCTCCGGTCGCAGGAGGCCGAGGCCACCGTGCGGGA ACTCGAGAGCCGCGTCGCCGCCGCCGACGCGGAGACGCGGCTCTTGCGGC TCAAGGTCTCCACGCTGCAGGAGGACAACGGCAGGCTCAGGGCGCAGGTG GAGGAGCTCGACACCGCCCGCGCAGAGCTGGCGCGCGCCAAGGAGAAGCT GCGCGCGGTCAAGGCGCGGGTGGAGGGAGAGCAGGAGGAGGCGCGGCGCG AGGCGGCGGCGCTCCGGGCGAGGGTGGTGGAGCTCGAGAGCGGTGGCGAG GAGAGGGCCGCCGCGCTGGCGACGGAGGTCGCCGAGCTGCGGAAGGCGAA CGCCGCCCTGGAGGAGGACAACATGGAGCTCGCCCTCCGGCTGCAGGACG CGGAGCAGGCTGCGTCCGCCTCGGTTAATCTGGTTCCTGAGGTAATTGCT GTCTTAGTTAATTCCTGTCTTCAGTATAATCTAGTTTTACATATTACCTT GTGTTTGTGTGGTTATCAAATGTTACTTTTGATGAATTTTTATTTTATTG GTTGATGAATTTTTTTTATTGGGTGCTATTTTAGCTTTATCGTAACGTGG TAAACCGTTGAAGATGGTAACCTTGCACGTTGGTTTACACCTTTTGAAAA ATGATTACAAAATCAGCAAAATATAATGAGTAATGAAAAGTAGTTCGGTC CACGAGGTTCATATGGATGGTTGGAAATTCCTATTCTGTGCGGTCAGGAA TAATTGCGACTAGGCATGTTTTATGTGATTTGCAACTGTGCTTTTGCAAG TGCAATGCCTTTTGTCATTCCCTTGTGTTGGGAATAAATAAAAGTCCAAA AAAGCAGAGGCTGGAATTTGTGCTGAGTTTTAATGAATTACGTAATTCCT ATTTTACTTCTTATTAATTATAAGTATAGTATTATTATTGAATCATTAGG TTTTTGTTCTAGTAGCTCATCATATCACGTTATTAAAGAGCTGAAGATGG TAACCTTACACGTCGTTTCCCAGCTTTTTATGAATACGAGTATGAAATGA TAAAAATCTAGCTCTAATTGGATCGAAATTTTCCTTTATCTCGATGACGG CACGTAGTTCTCTGGCTAGAGCATGGGGTAATCAAATCAAACTAATATTC TTCCATTCAGGAATAGTGCCAATGAGATTTGCAACTATGTTGGCGAAATG CCGTTTGCCATTGCCATTCCCTCTTGTTGGGAATAAAGGTTGCCAAAAAA GCATAGACTTGATTTGTGCCAAATTTTCCATGTCACTGCAACAGCTTTAT TTTGACTTCGGGGTGCCTTCTCAAACTAGGGCTGTGTTCACTTCGCGAAA AGTAGGTGAAAAGTTATTGTAGCATCTTTCGTTGTTATTTGGCAAAATTT ATCAATCATGGACTAACTATGCTTAAAAGATTCGTCCCGACATTTACAGA CAAACTATGTAATTAGTTATCTTTTTTACCTACATTTAATGCTCCATGTA TACGTCGAAAGATTCGATGTGATGGATGGAAGAGGAAATATTTTGGGTTT GCATGGCAACTAAACAGGGCCTAGATTAGCTCAACCCGGGTTTGTTATTC CGAAGCCAGAGTCATGCTTAGATCCTTCTACGACTGAGCTTTTCTTTTTG GCGACCGTACCTTTTGCGACTGAGTTATTGGGTGTTCCGTTGACACGATG AGTTAAATGGTTCATTCATGCTGCGGTTCACGATGGTACAGGACAGCAAC GTCTGATCACCTTCATTAAAAAAAAGCGTTTGATTACCTTCTGTTCTTTG AAGTATTTTTTTAATGCATGGATAATGTATGAAGTTAGTCATCTTCACCA TTTTTTCAAAAAAGTTTATTAACCAATCTACCTTATTTCTGCTTCATCAT ATATCACTGTGTCTTGTACTTTTTCTAATAGTATACTGAACATGATAGGG TCATAAGCTTCATCCACCTTATTGAATAGTCGTTTCAGACCTTTGAAAAC CCTCAAAAGCCAAAGGAAGGGAATAGTTCTTCCACATCTCTTTTTATATC TTCACATCTCCTTCAGCAACAATTACCCACACATTCCCTTCCTTCATGCG AATTTTGAAATTACGCATACAATTTTTTTGACCTGGTCGTATGTAGCCAC AACCACAACAGATTTCGGGCTTTCAGCTAGCACTCCAAGTCCAGAGCAGG CAGGGACGAAGCCAGCGGTAGGGCAAGCCGGGCTCGAACCCCACCCACCC CCCAAGCCGGGCTCGAGCCCCACCCCCGGATTATTTCCTGGCTTCGTCCT TGAAAGCAAGAAGTGTTTTAAAAGGAGAAAGATGCCTGTGTAGTAAAGCA ACTTACCGTAGTAGCAGAGGTAGTTGCTAACACGATACTAGCTCAAAATC AGAATCTCTCTGTTTCTTATAGTTGGAAATACCGTGACCATGACTATGCT TTCCAGAAATGGTGTCTGTCAAAAGCTTTTCAGTAATTTTAAGCTTTGAT CCATTGGTAGTACCGTAGTAGCAGTAACAATTCTGAGCTTTTTCACCATG CTTTGAGAGGCAAGTACAAGAGATGCCACTGATCGATTATAGTTACAAAT TTTTTGGTACAGAACCTTTTTGGTACAAGAGGCAAGCATTTGACGTGCAA TATATATACTGAACTGACCTTTTTGGCATGCAGGAGGGCATGGTTGAGGA GATGACGTACCTGAGGGAGAGCAACGAGAGGCTGACGAGGCAGATCGAGC AGCTGCGCAACGACCACTGCGCGCACGTCGAGGAGCTCGTCTACCTCAAG TGGGTCAACGCCTGCCTCCGCCATGAGCTCCTCCGTAACCATGATGGCGG CCACCCCACAGCCGAGCAACAGGGCCACAGCACTGACAACCGCCGCGTCG GCTCCAGAGATGACCTGTCATCGGCCCTGGAGCTGAGCAAGAGCACGAGC TTCCGGTCCAGCGAGAGGGCCAAGCAGCTCATGCTGAGGTACGGTCACCC CGGCCTCGACGGCTTCGACCCTGCCCTCTTCTCCCCGCTGCACGAGTCAG TCGACGGCGACGGCTACGTGCGATCGCCGGCGAGCAACTACGAGCCTCAG CGGAGCCCTTGTTCTAGGCCCGGGACGGGGACGGCGATGGCCGCCTCCCC CGCCGCAGCACTGGGGAAGAAAGCCGGGCCGCGCAAGCTCAAGCTTCTCG GTAACATCAAGAAGCTGCTGCCAGGCGGCAAGAGAAGCCACTCATCAAGC CACGTGCACGGGCACGGGCACGGGCATGACCACGCCGGCCGCGATGGCAG GAAGGCGCCGGCTCCGAGGGACGAGTATCTCGAGAAGGCCATGCAGTGGC TGTCGACCCACGACGTGCTCGACGGCGACCACTCGTACGAGAGCACGCCG CTGTCGTCGTGCGAGAGGACGCCGCGGAGCAGCGTGATGACCAACACAAC CGTGGACTCGCGCGCCCGCGTCGGTGGCGTCGGCGGCGGCCACAGCGAGC GTGGGGAGACGGCGCGGTCGGAGGCGGAGCCGATCTTGGCAAGGTCGAAG AGCGACGCCGGCGGAGCATACGGGCGGGAGGGGAGCAGGTACCACGCGCT CAGACCTGACCACCCGGCCAGCGAAGCGGACGGGTTCCGTGCGCCGGAGA AGCGGGAGTCGAGGAGGCGGTCGGAGGAGCTGAGGAGCCCGGCGGTGGCA TAGTACTTGGCGCCCAACTGCAATTAACGGATTAACAGGAAGGACAGTTT GCAGTTTGCACAAGGCTTTTTTTTTGTGAATATTTGTACTAATGTTCCAG TTTGTACTAGGGGCAGATTTAGCGTAGGACGGATGGGGATTGAGCCCTCC CCTACTGCCTCTCAAACAATTGAGCCCAACCTGAACCCCCTCCGTAACTT TCTATAGAAGGAAGAAGAATAATGGAGAGAAAGGAAGGGAAGGAAGAATG CTAGGTTCATGCTCTGTGTCCGCACCTATGTATGGTCGAATGATGATATC CAAGTTTTTCTAGATAAGCTTTTATCCCATTTCCCATGTATTTTGGCTTG ATTCCTTTTGTTTTATGGCGTGGCACA
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Coding sequence (CDS) from alignment at Sh_004L14_contig-1:103171..108097+

>Sh_004L14_contig-1_t000050 ID=Sh_004L14_contig-1_t000050|Name=Sh_004L14_contig-1_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=2124bp|location=Sequence derived from alignment at Sh_004L14_contig-1:103171..108097+ (R570 Sugarcane cultivar)
ATGGAGGGCGGCGAGGGTGGAGTAGGGCCTGCTGGCCTGAGATTCCTTCT
CCAGTTCGATCCGGGAAAGCCCGGATCGTTCGACCGCACGCTGCTCGGCT
TCTCGCTCTCCGCGCTCTTCAGCCGCCTTGTTGGATGGAGCAAGGACGGC
CAGCGGAGAGGAGGAGGAGGATCCACGGCGATCGCGGTGGAGGGTGGGGG
CGACGACTACGGGAACGCCGCCGTGTCCGCCGCCGCGCTTGCCGCCGCGG
CCTCTCTCTGCCTCGCGGCGATGTACGCGTCTGATCAGCGGCCTCGCCGC
CGCCGCCGCCGGCAGCCGGCGGCCGCTCTGCCTGCGCCGAGTTCAGCTCC
GCGGCCTCGCGCTCTTCCTGCTCCACATGATGGGCTCAGGATTCTGTCGT
CAAACCCAGACGACGAACCTCCGGACAACGTGATTCACGGCGCGTCGATC
GGCGCCGGAGACGACGACGAGCCGGATATCGTCGCGCGAGTGGAGATGGA
GGCTATGCCGGCCCCAGTAGTCGCCGCAAATGCCGACGACGAAACCGAAA
CAGACCCGGACCATCCGGAGGAACAACAAGAAGAAGAACGGCAGGAGCTC
CAGCGGCTGAGGGAGCTGTGGCTGTCGCTGCTGGAGCGGGAGCAGAGGCT
GGAGCTCCGTCTGCGGGAGCTCGAGGGCCTCCGGTCGCAGGAGGCCGAGG
CCACCGTGCGGGAACTCGAGAGCCGCGTCGCCGCCGCCGACGCGGAGACG
CGGCTCTTGCGGCTCAAGGTCTCCACGCTGCAGGAGGACAACGGCAGGCT
CAGGGCGCAGGTGGAGGAGCTCGACACCGCCCGCGCAGAGCTGGCGCGCG
CCAAGGAGAAGCTGCGCGCGGTCAAGGCGCGGGTGGAGGGAGAGCAGGAG
GAGGCGCGGCGCGAGGCGGCGGCGCTCCGGGCGAGGGTGGTGGAGCTCGA
GAGCGGTGGCGAGGAGAGGGCCGCCGCGCTGGCGACGGAGGTCGCCGAGC
TGCGGAAGGCGAACGCCGCCCTGGAGGAGGACAACATGGAGCTCGCCCTC
CGGCTGCAGGACGCGGAGCAGGCTGCGTCCGCCTCGGTTAATCTGGTTCC
TGAGGAGGGCATGGTTGAGGAGATGACGTACCTGAGGGAGAGCAACGAGA
GGCTGACGAGGCAGATCGAGCAGCTGCGCAACGACCACTGCGCGCACGTC
GAGGAGCTCGTCTACCTCAAGTGGGTCAACGCCTGCCTCCGCCATGAGCT
CCTCCGTAACCATGATGGCGGCCACCCCACAGCCGAGCAACAGGGCCACA
GCACTGACAACCGCCGCGTCGGCTCCAGAGATGACCTGTCATCGGCCCTG
GAGCTGAGCAAGAGCACGAGCTTCCGGTCCAGCGAGAGGGCCAAGCAGCT
CATGCTGAGGTACGGTCACCCCGGCCTCGACGGCTTCGACCCTGCCCTCT
TCTCCCCGCTGCACGAGTCAGTCGACGGCGACGGCTACGTGCGATCGCCG
GCGAGCAACTACGAGCCTCAGCGGAGCCCTTGTTCTAGGCCCGGGACGGG
GACGGCGATGGCCGCCTCCCCCGCCGCAGCACTGGGGAAGAAAGCCGGGC
CGCGCAAGCTCAAGCTTCTCGGTAACATCAAGAAGCTGCTGCCAGGCGGC
AAGAGAAGCCACTCATCAAGCCACGTGCACGGGCACGGGCACGGGCATGA
CCACGCCGGCCGCGATGGCAGGAAGGCGCCGGCTCCGAGGGACGAGTATC
TCGAGAAGGCCATGCAGTGGCTGTCGACCCACGACGTGCTCGACGGCGAC
CACTCGTACGAGAGCACGCCGCTGTCGTCGTGCGAGAGGACGCCGCGGAG
CAGCGTGATGACCAACACAACCGTGGACTCGCGCGCCCGCGTCGGTGGCG
TCGGCGGCGGCCACAGCGAGCGTGGGGAGACGGCGCGGTCGGAGGCGGAG
CCGATCTTGGCAAGGTCGAAGAGCGACGCCGGCGGAGCATACGGGCGGGA
GGGGAGCAGGTACCACGCGCTCAGACCTGACCACCCGGCCAGCGAAGCGG
ACGGGTTCCGTGCGCCGGAGAAGCGGGAGTCGAGGAGGCGGTCGGAGGAG
CTGAGGAGCCCGGCGGTGGCATAG
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