Sh_004L14_contig-1_t000060

Overview
NameSh_004L14_contig-1_t000060
Unique NameSh_004L14_contig-1_t000060
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length963
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L14_contig-1contigSh_004L14_contig-1:114258..115700
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Note1-aminocyclopropane-1-carboxylate oxidase 1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_g000060Sh_004L14_contig-1_g000060R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_p000060Sh_004L14_contig-1_p000060R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L14_contig-1_t000060 ID=Sh_004L14_contig-1_t000060|Name=Sh_004L14_contig-1_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=963bp
ATGACGGGTCCCATGGAGATTCCGGTGATCGATCTCAGCGGCCTCAACGG
CGGCGACGAGGAGAGGTCACGGACCCTGGCGGAGCTCCACGACGCCTGCA
AGGACTGGGGCTTCTTCTGGGTGGAGAACCACGCCGTGGACGCGCCGCTG
ATGGACGAGGTCAAGCGCTTCGTCTACGGCCACTACGAGGAGCACCTCGA
GGCCAAGTTCTACGCCTCCGACCTCGCCAAGAGCCTCGAGACCGACGACG
GCCGCCCCGAAGGCGAGGCTGAGGAGCCCTCCGACAAGGTGGACTGGGAG
TCCACCTACTTCATCCAGCACCGCCCCAAGACCAACGTCGCCGACTTCCC
GGAGATCACGCCGGCGTGCAGGGAGACGCTGGACGCGTACATCGCCCAGA
TGGTGTCTCTGGCGGAGCGCCTGGGCGAGTGCATGAGCCTGAATCTGGGC
CTCCCGGCGCGCCACGTCGCCGACACCTTCGCGCCGCCGTTCGTGGGCAC
CAAGTTCGCCATGTACCCGTCGTGCCCGCGCCCGGAGCTGGTGTGGGGCC
TGCGCGCGCACACCGACGCCGGCGGCATCATCCTGCTCCTCCAGGACGAC
GTCGTGGGCGGGCTCGAGTTCCTGAAGGGCGGCAAAGACTGGGTCCCCGT
CGGCCCCACCAGGGGCGGAAGGCTCTTCGTCAACATCGGGGACCAGATCG
AGGTGCTCAGCGGCGGCGCCTACCGGAGCATCGTGCACCGCGTCGCGGCC
GGGGACCAGGGCCGCCGCCTGTCCGTGGCCACGTTCTACAACCCCGGCCC
CGACGCCGTGGTGGCGCCGGCGGCCAGGGAGGACGCCGACGCGGCGGCGG
AGCTGGCGTACCCCGGCCCCTACAGGTTCGGGGACTACCTCGAGTACTAC
CAGGGCACCAAGTTCGGCGACAAGGACGCCAGGTTCCAGGCCGTCAAGAA
GCTGCTCTGTTAA
back to top

protein sequence of Sh_004L14_contig-1_p000060

>Sh_004L14_contig-1_p000060 ID=Sh_004L14_contig-1_p000060|Name=Sh_004L14_contig-1_p000060|organism=R570 Sugarcane cultivar|type=polypeptide|length=321bp
MTGPMEIPVIDLSGLNGGDEERSRTLAELHDACKDWGFFWVENHAVDAPL
MDEVKRFVYGHYEEHLEAKFYASDLAKSLETDDGRPEGEAEEPSDKVDWE
STYFIQHRPKTNVADFPEITPACRETLDAYIAQMVSLAERLGECMSLNLG
LPARHVADTFAPPFVGTKFAMYPSCPRPELVWGLRAHTDAGGIILLLQDD
VVGGLEFLKGGKDWVPVGPTRGGRLFVNIGDQIEVLSGGAYRSIVHRVAA
GDQGRRLSVATFYNPGPDAVVAPAAREDADAAAELAYPGPYRFGDYLEYY
QGTKFGDKDARFQAVKKLLC*
back to top

mRNA from alignment at Sh_004L14_contig-1:114258..115700-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L14_contig-1_t000060 ID=Sh_004L14_contig-1_t000060|Name=Sh_004L14_contig-1_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=1443bp|location=Sequence derived from alignment at Sh_004L14_contig-1:114258..115700- (R570 Sugarcane cultivar)
AACACAAAGTGCAGACATATAGACATCATTCATAGTGTAGTGTCGGAAAC CGTACCTTTTTTTTTCTAGTACAAAGCAATGACGGGTCCCATGGAGATTC CGGTGATCGATCTCAGCGGCCTCAACGGCGGCGACGAGGAGAGGTCACGG ACCCTGGCGGAGCTCCACGACGCCTGCAAGGACTGGGGCTTCTTCTGGGT AATTATCAACAATGAATGGTTTCTGATTTAATTATTTCTAGTGTAATGCA TCTCGTAGTCGTGTAGCTTGGCAAATTTTTTATATGCGTGCTCATCATGC GCCGCCGCCGCGCGCAGGTGGAGAACCACGCCGTGGACGCGCCGCTGATG GACGAGGTCAAGCGCTTCGTCTACGGCCACTACGAGGAGCACCTCGAGGC CAAGTTCTACGCCTCCGACCTCGCCAAGAGCCTCGAGACCGACGACGGCC GCCCCGAAGGCGAGGCTGAGGAGCCCTCCGACAAGGTGGACTGGGAGTCC ACCTACTTCATCCAGCACCGCCCCAAGACCAACGTCGCCGACTTCCCGGA GATCACGCCGGCGTGCAGGGAGACGCTGGACGCGTACATCGCCCAGATGG TGTCTCTGGCGGAGCGCCTGGGCGAGTGCATGAGCCTGAATCTGGGCCTC CCGGCGCGCCACGTCGCCGACACCTTCGCGCCGCCGTTCGTGGGCACCAA GTTCGCCATGTACCCGTCGTGCCCGCGCCCGGAGCTGGTGTGGGGCCTGC GCGCGCACACCGACGCCGGCGGCATCATCCTGCTCCTCCAGGACGACGTC GTGGGCGGGCTCGAGTTCCTGAAGGGCGGCAAAGACTGGGTCCCCGTCGG CCCCACCAGGGGCGGAAGGCTCTTCGTCAACATCGGGGACCAGATCGAGG TGCTCAGCGGCGGCGCCTACCGGAGCATCGTGCACCGCGTCGCGGCCGGG GACCAGGGCCGCCGCCTGTCCGTGGCCACGTTCTACAACCCCGGCCCCGA CGCCGTGGTGGCGCCGGCGGCCAGGGAGGACGCCGACGCGGCGGCGGAGC TGGCGTACCCCGGCCCCTACAGGTTCGGGGACTACCTCGAGTACTACCAG GGCACCAAGTTCGGCGACAAGGACGCCAGGTTCCAGGCCGTCAAGAAGCT GCTCTGTTAAGCGATACCGTCAAGAAGCTGCCCTGTTTACCGGAGCTAGC TCAGTTCGTGGATTATGCGTTGCGTTGCGTTTCGTTTTCGAGCTTGCTTG TTGTTGATCCATTGTCTGCATAGTATGCACTGGGGTCGCGTGTTTAAATT TAGCAAATCTTTTACGTAGTCATTACTGGTTCTACGTATTCAGCTGTGGT CGAGGTTGACTATACAATGTTGCGGCTTAAGGGCGCATCCCATTTGGTGG ACTTGCAGTCTTGCACATGCCACTCGACGTTGTTCGCTTTGTT
back to top

Coding sequence (CDS) from alignment at Sh_004L14_contig-1:114258..115700-

>Sh_004L14_contig-1_t000060 ID=Sh_004L14_contig-1_t000060|Name=Sh_004L14_contig-1_t000060|organism=R570 Sugarcane cultivar|type=CDS|length=963bp|location=Sequence derived from alignment at Sh_004L14_contig-1:114258..115700- (R570 Sugarcane cultivar)
ATGACGGGTCCCATGGAGATTCCGGTGATCGATCTCAGCGGCCTCAACGG
CGGCGACGAGGAGAGGTCACGGACCCTGGCGGAGCTCCACGACGCCTGCA
AGGACTGGGGCTTCTTCTGGGTGGAGAACCACGCCGTGGACGCGCCGCTG
ATGGACGAGGTCAAGCGCTTCGTCTACGGCCACTACGAGGAGCACCTCGA
GGCCAAGTTCTACGCCTCCGACCTCGCCAAGAGCCTCGAGACCGACGACG
GCCGCCCCGAAGGCGAGGCTGAGGAGCCCTCCGACAAGGTGGACTGGGAG
TCCACCTACTTCATCCAGCACCGCCCCAAGACCAACGTCGCCGACTTCCC
GGAGATCACGCCGGCGTGCAGGGAGACGCTGGACGCGTACATCGCCCAGA
TGGTGTCTCTGGCGGAGCGCCTGGGCGAGTGCATGAGCCTGAATCTGGGC
CTCCCGGCGCGCCACGTCGCCGACACCTTCGCGCCGCCGTTCGTGGGCAC
CAAGTTCGCCATGTACCCGTCGTGCCCGCGCCCGGAGCTGGTGTGGGGCC
TGCGCGCGCACACCGACGCCGGCGGCATCATCCTGCTCCTCCAGGACGAC
GTCGTGGGCGGGCTCGAGTTCCTGAAGGGCGGCAAAGACTGGGTCCCCGT
CGGCCCCACCAGGGGCGGAAGGCTCTTCGTCAACATCGGGGACCAGATCG
AGGTGCTCAGCGGCGGCGCCTACCGGAGCATCGTGCACCGCGTCGCGGCC
GGGGACCAGGGCCGCCGCCTGTCCGTGGCCACGTTCTACAACCCCGGCCC
CGACGCCGTGGTGGCGCCGGCGGCCAGGGAGGACGCCGACGCGGCGGCGG
AGCTGGCGTACCCCGGCCCCTACAGGTTCGGGGACTACCTCGAGTACTAC
CAGGGCACCAAGTTCGGCGACAAGGACGCCAGGTTCCAGGCCGTCAAGAA
GCTGCTCTGTTAA
back to top