Sh_004L14_contig-1_t000070

Overview
NameSh_004L14_contig-1_t000070
Unique NameSh_004L14_contig-1_t000070
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L14_contig-1contigSh_004L14_contig-1:118620..119724
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDoubtful hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_g000070Sh_004L14_contig-1_g000070R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L14_contig-1_p000070Sh_004L14_contig-1_p000070R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L14_contig-1_t000070 ID=Sh_004L14_contig-1_t000070|Name=Sh_004L14_contig-1_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=168bp
ATGAATCAATACTTTATTGTCATTCTGGTGGCCAAGCAAATCAAAGAAAA
TTTAAAGCAAGATATAAGGGCCTTCCAACTCGCTTCCAGTAGCGAGTCTT
TTCCCAGTGTTTTGGTTTTGAATGTATCTAGGCCCAATTGTGGTGATTAT
GAGGTTTTGATGATTTGA
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protein sequence of Sh_004L14_contig-1_p000070

>Sh_004L14_contig-1_p000070 ID=Sh_004L14_contig-1_p000070|Name=Sh_004L14_contig-1_p000070|organism=R570 Sugarcane cultivar|type=polypeptide|length=56bp
MNQYFIVILVAKQIKENLKQDIRAFQLASSSESFPSVLVLNVSRPNCGDY
EVLMI*
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mRNA from alignment at Sh_004L14_contig-1:118620..119724-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L14_contig-1_t000070 ID=Sh_004L14_contig-1_t000070|Name=Sh_004L14_contig-1_t000070|organism=R570 Sugarcane cultivar|type=mRNA|length=1105bp|location=Sequence derived from alignment at Sh_004L14_contig-1:118620..119724- (R570 Sugarcane cultivar)
GGATCTACAGGGGGGCTGCCGGGGCTCTAGCCCCCCCTACCCTCGCCGCG ACATTGGAGCCCCCCCTGAGCCCCCCCTAAAAAATTTGAGCCATTAACCA TAGGAAGGAGGGGCTGGCCGCTGGGAGCAGGTGTTCTGGACGGAGCTTGA AGACAACTCGAGGCGCTGGTGTGCTTCCTAGCTTCCAGGCCTGTATTACT TGTATTTGCGTGGCCCAATATGTAGAATAGAGAAGTCTGTCCGGCTGTCC ACAGCCCATTAAGAAGACAAGTCTTTTTTCTTGTTTTTCAGTCCATCACG GGAGGGAGCCGGAGAGACTCGACTCTCGGCAACTCGAGCAGACGGGGGCG AGCGGCGGCAGCGCTAGCTAGGGTTGACGGCGCGGCGCGGCGCGGCGCGG CGGTGCCGGTGCGGCCAGGGCCAACGGCGCGGCGGCCGGAGGAAGCAGGC CAGAAGTGTGATGACTTTATGAACCAAAGAACAAATGTGGCTAGAAGAAT TGATGTAATTAGCAAGGAAGAAGAGAAAAGATATGAGATTCGCTTGAACT CTTCTTTAGATGTAGAAAGATTTCTCATAATGCAAGGTGATACTTGAATT TAGTGTCACTAATTTATTTTTTTATTTTTATAGACTTCTTCAAACGATTC ATGAAGAATGCGGCAGCGGAACATCGATCTTTCATCTTTTGTTGGTTAGT TATAAAAATTATATCTTTTACTTTTTATTAAGCATTTTGTGATGCACTTT CGATTAAGACTGCTATATCTTAGCTTTGTATGGAATATAATTGAGTATTT GATTTCAATTAGTCTACCTCTCTTTGGCCCAGCCCCCCCTAAATATTTTT TCTAGATCCGCCACTGTTGAACCAAAATTCACGGGCAAACACACAAGAGG TAAGAAGATTGTTGATAGATTCTAAAGATTGGCCACAATGAATCAATACT TTATTGTCATTCTGGTGGCCAAGCAAATCAAAGAAAATTTAAAGCAAGAT ATAAGGGCCTTCCAACTCGCTTCCAGTAGCGAGTCTTTTCCCAGTGTTTT GGTTTTGAATGTATCTAGGCCCAATTGTGGTGATTATGAGGTTTTGATGA TTTGA
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Coding sequence (CDS) from alignment at Sh_004L14_contig-1:118620..119724-

>Sh_004L14_contig-1_t000070 ID=Sh_004L14_contig-1_t000070|Name=Sh_004L14_contig-1_t000070|organism=R570 Sugarcane cultivar|type=CDS|length=168bp|location=Sequence derived from alignment at Sh_004L14_contig-1:118620..119724- (R570 Sugarcane cultivar)
ATGAATCAATACTTTATTGTCATTCTGGTGGCCAAGCAAATCAAAGAAAA
TTTAAAGCAAGATATAAGGGCCTTCCAACTCGCTTCCAGTAGCGAGTCTT
TTCCCAGTGTTTTGGTTTTGAATGTATCTAGGCCCAATTGTGGTGATTAT
GAGGTTTTGATGATTTGA
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