Sh_004L16_t000010

Overview
NameSh_004L16_t000010
Unique NameSh_004L16_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L16contigSh_004L16:4881..11242
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Expressed protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L16_g000010Sh_004L16_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L16_p000010Sh_004L16_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L16_t000010 ID=Sh_004L16_t000010|Name=Sh_004L16_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1242bp
ATGTATGATCAGCTCCTCGGTTGGATGCACCGGAAGTTACGACAGAATAG
TAATGATGTGTTCAAAGAGTTCAACAACGGTGGAGGTAGGACCTGCAACT
GCATCACCGGGCTGGCCTCGCCGGACCCGGCCACCTTCCTCGCCTCCGCC
AACGAATACTTCGCCGGCGACCACGACTTCACCAACAATCATTCATCGCC
GCCGGACGCCGACCTCTTCACCTTTGGCGGCAGCGGCCTCCTCACCATTG
GCACTCTAGGCATCGCCGCTGTCGCGGTCCCTGCAGACGCTGACGACGAC
GATTTCGACGTCGACGTCGACTCTGACGACAACGACGACACCGCGGACGA
AGGGGACAACAAGGTCGACAGCGCCGTCACGCCCACATTCACATACACGG
CGTCGCCTCCGCCAGAGGCCGCCGCTGTCGTTGATGAGAAGGCTGCAGTT
GCCGTGGTGGAGGCCATTGCCGAGAAGGACGACGACACCACCACGGAGGA
CGACCTCATGGTGGTGAGCGCGGAGCTGGAGAAGGTTCTCGGTGGCCGCA
ACAGCGGCGCCGCCGGCGACCTGGTGGCGTCGGCGCGGGTGAGCTTCGCC
ATGGGCGGCGTGGACTGCCCGCTGCAGGGCTTCCTGTTCGGCTCCCCGGT
GAGCGACGCCGCCGAGTCGCGCCTGGAGCAGCCGCGGGATAGCAACGGCG
GCAGGCGCACCTCGCTCGGCGAGCTGTTCATGCGCACGCGCTTCGCCGAC
GAGAAGGTGGCGCTCGTCGCCGTCGAGGAGGGCGAGGACGGCGGGGATGG
TGGAGCCGAAAGGGGCGACGGGAAAGCGGGGAAAGGCGGCGGCTGCCACA
AGACAATGGAGAAGAGGAGGGTGAAGGATGAGAAAGTTCCCGGCGGTGAT
GGAGCGCCGGCGAGTGCAGCGGTAACCAAGAGCAAGTTTCAGAAGATCCT
CCAAATCTTCCACAGGAAAGTGTACCCTGAGAGCGCGGCCCTGGCGCGGA
ACCTGACCAAGAAGAGCCGCAAGCGCGGCAGCGGCGGCGCCGACGAGCCC
GCCGAGCCGTTGTCGTCCAACAAGCTCCGGTGCCGCAAGGAGCATCGCGC
GCCGGGGTTCGGCTGCTGCGCCAACCGCGCCTCCTTCGGTGGCGCCGCTT
CTCCCATCCACGACGACGACGAGGAGCTCCACGGCAGCAAGAGCGGCCAC
TGGATCAAGACCGACGCTGAATACTTGGTGCTGGAGTTATAG
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protein sequence of Sh_004L16_p000010

>Sh_004L16_p000010 ID=Sh_004L16_p000010|Name=Sh_004L16_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=414bp
MYDQLLGWMHRKLRQNSNDVFKEFNNGGGRTCNCITGLASPDPATFLASA
NEYFAGDHDFTNNHSSPPDADLFTFGGSGLLTIGTLGIAAVAVPADADDD
DFDVDVDSDDNDDTADEGDNKVDSAVTPTFTYTASPPPEAAAVVDEKAAV
AVVEAIAEKDDDTTTEDDLMVVSAELEKVLGGRNSGAAGDLVASARVSFA
MGGVDCPLQGFLFGSPVSDAAESRLEQPRDSNGGRRTSLGELFMRTRFAD
EKVALVAVEEGEDGGDGGAERGDGKAGKGGGCHKTMEKRRVKDEKVPGGD
GAPASAAVTKSKFQKILQIFHRKVYPESAALARNLTKKSRKRGSGGADEP
AEPLSSNKLRCRKEHRAPGFGCCANRASFGGAASPIHDDDEELHGSKSGH
WIKTDAEYLVLEL*
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mRNA from alignment at Sh_004L16:4881..11242+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L16_t000010 ID=Sh_004L16_t000010|Name=Sh_004L16_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=6362bp|location=Sequence derived from alignment at Sh_004L16:4881..11242+ (R570 Sugarcane cultivar)
ATGTATGATCAGCTCCTCGGTTGGATGCACCGGAAGTTACGACAGAATAG TAATGATGTGTTCAAAGAGTTCAACAACGGTGGAGGTACATTCATCTTGA TCTGCCTTCTCTCTGCTCTCCGCTTTTGTTCATCAAACATTTTTTTCTCA TTCCATTGGAAAATGGCCTTTTCCAATCAAGAAGAGAAATGAAAACAGCC TTTTCATTCTCATCGCCTTTCAGATATTATGATTGACTGATCATACAGCA CATATAGGGGGACTATAGCAGCCAAGCTAGCTAGGACTGTGTATGGGTCA CAATGAGAACTAGTTTTACCATGCTTCCTCTAGGCCGGTAAAGGAAGTCG TTTTGCACAAGGTTTGAGTCAAGCATTGGAATATACATCATAAATAATTT TTAAGTTGTTGAGTTTGAAAATATGAAAACCACATGAATAGATTTGCCTT GAAAAAAATACTTTCATAAAAATATACATATATCACTTTTTAATAAATAT TTTTATAAAAATAAGAAGTCAAAATTTTGTTTTGGAGACCGTGTCATTGT CCAAAATAACTTTTTTTACCGGCTTGGAGGGAGTATTTGTAATGAACGAC TAGTATATCACTGACAAGCAAGCACATGAGCTTAATACATTGGTCCACAT GTCAGCTACAATTTATACATAGCCCTTGTTTAGTTCCTAATTCCACCACC CAAATTCCACTATGCAAAAAGGAGATTCCCCATCATATCAAAATGTCGAC AAATGCATGGAGTACTAAATGTAGATAAAATAAAAAACTAATTGCACAGT TTTGTTGTACTTTGCGAGACGAACATTTTGAGTCTAATTAATCAATTTTT GGACAATTTTTTACACTACAAAACAAAAGTTGCTACAGTATTCCGGCAGG AACACTGTAGCAGCCAGAGCCGAATCCGTGACCCCGACTTGGGATCTAAA CACGGCCATAGTAATTTCAGAACGCTAGGTTTAAACAGTATGGATCCGAA ATTTGCCCTTTTGCTGTTTGTCACATTGGACTGGACATGGCACATGCCAT TCCTTTCCAGCTTAGGCCCCGTTTGGTTACGACGTGTTAAAGTTTAACTC CCATCACATTAATGTTGTGGCAAATGCATGAAGTACTAAATGTAGAATAA TTGCATGCATGTCGACACAGGTTAGGAGTAATTTACGAGACGAATCTATT AAGCCTAATTAGTCCAAAATTAGAAACTTTTTGTTAAATAAGACGAAAGT GCTACAGTGTTTGTTAAACTTTAACACCCAAACCAAACACCCCTTAGTCT AGCTCAACAGTTGCAGTGCAAGCAGCACCCCATATCATCATATTTCTAGA TAATATTTCTTTAGAGCAACATTGTCCTATATGAGGGTATCCTCTCTTTT TTTTCTGCAAGGAATATATTGCAAGACTTTTCACGTTTTTTTAGTCAGAG ACCACATGTTGATATTTTTGTAGCTTAGTGTGAGCTGGAAAAAAATAGTT AGGATATCCAGTTTGAATTTAAATATTTATTAATTTAACAGAAGCTGTTC ATATGTAAATTTGACACTGATTACCTTAGCTGATACTGTACGTATATTGA ATAAGAAATCAAAATATTCAATTTTAGTTTTAACTTTTTTGTGAAGAACA TAATTTAAGTTTTCTATCCTACCGTTGACGACAATTTTTTTCCATTCATT TTGTTTTTCAAATGTAGAATAATGTGGTATTCCTTTTTGTGTGAAATTGT ATAGGAATCTAATATATACCGCATCTTCATAAGTAACCATTTGATAGATA CTCTTGTTACTGCCTATTCATAATTTGCTTGAGAGAATAAGGAAAACAAA AAGCATAGAATCCTCACTATCGGCAGATGCCTACCACTGGGTGAATAGCA TCATTTTTTATTGGAATTAATCAAGGAAAACAAGATCACCTATACCAAAT CTGGTCTCGAACTTAGGTGTGCATGTTCCACCACCCTAATCTATCTATTC TACTCCCTTTATAGTAACAAAAGTAAAGTTTTCGGTTGTCTGAAGTGAAC CTTATTGAACTTCAATAAAATATCTATAACATAGGACAAATATGTATTTC TACAAAACTAATTTTGAAGGTAAATTTACTTGGTTTCTCTTAGAAAAAAA GACAAATCAACTCATATCCCTGCAAAGTCTTAAACTAAACACGAAAATTA GAGTTCTATTTTTTGTCGAAGTTTGAATTAGTTGACTTTACAAAAAAAAA AGGGTCATCGCTAAGGCAAAAGTACCCAAAAAATCACCATAAATCGTTAA AAAAACTCAACAAATTAAACACAACCGTACTAAGACTACCCGTACTCATG GACCTCTATATTCATCCTCTATACGTCCTAGTCAGCAAGATTCTCTCCTC TATACTCAATTCTCCTGCACTCATCCATCCTCTATATCATCCTCTATCCA CTTTATCCACTGTGGCATCCACTTGTCACTTTATCTAAATATATCCATGT GTGATCTAGTTTTAAAGGATTTATTGAGACGAATTTAATGGTGCAATCGA AATTTAATTTGGATTTTTGGTTTGTGAGTTATAGCATTTTTTTTCTTTGT TTAGCTAGTGGGCCCCGCCACTATAGAGTATAGAGTAAGCACTATACCAC TCTAAATATAGAGTGAGAGAAAATATAAAGTATCGTTTTAGAGTACTCAG ACTACCCGCACTCATGGACCTCTATATTCATCCTCTATACGTCCTAGTCA GCAAGATTCTCTCCTCTATACTCAATTCTCCCGCACCCATCCATCCTCTA TATCATCTTCTATCCACTCTATCCACCGTAGGACCCACTTGTTACTTTAT CTAAATATATCCATGTGTGATCTAGTTTTGAAGGATTTATTGAGACGAAT TTAATGGTGCAATCGAAATTTAATTTGGATTTTTGGTTTGTGAGTTATAT CATTTTTTCCTTTGTTTAGCTAGTGGGGTCCGCCGCTACAGAGTATAGAG TAAGCACAGTACTACTCTAAATATAGAGTGAGAGAAAGGATAGAGTATCG ATTTAGAGTACCCAGTGCAGCAGTTTTTACTCTATATTCATACTCTAAAG TTTTAGAGTATTGTTTTAGAGTACCCACTGCGGGTAGTCTCAGTGCAGCA ATTTTTACTCTATATTCATACTCTAAAGCTTTAGAGTATCGTTTTAGAGT ACCCACTGCGGATAGTCTGACAAGTATTTCACTGTAGGTAGGACCTGCAA CTGCATCACCGGGCTGGCCTCGCCGGACCCGGCCACCTTCCTCGCCTCCG CCAACGAATACTTCGCCGGCGACCACGACTTCACCAACAATCATTCATCG CCGCCGGACGCCGACCTCTTCACCTTTGGCGGCAGCGGCCTCCTCACCAT TGGCACTCTAGGCATCGCCGCTGTCGCGGTCCCTGCAGACGCTGACGACG ACGATTTCGACGTCGACGTCGACTCTGACGACAACGACGACACCGCGGAC GAAGGGGACAACAAGGTCGACAGCGCCGTCACGCCCACATTCACATACAC GGCGTCGCCTCCGCCAGAGGCCGCCGCTGTCGTTGATGAGAAGGCTGCAG TTGCCGTGGTGGAGGCCATTGCCGAGAAGGACGACGACACCACCACGGAG GACGACCTCATGGTGGTGAGCGCGGAGCTGGAGAAGGTTCTCGGTGGCCG CAACAGCGGCGCCGCCGGCGACCTGGTGGCGTCGGCGCGGGTGAGCTTCG CCATGGGCGGCGTGGACTGCCCGCTGCAGGGCTTCCTGTTCGGCTCCCCG GTGAGCGACGCCGCCGAGTCGCGCCTGGAGCAGCCGCGGGATAGCAACGG CGGCAGGCGCACCTCGCTCGGCGAGCTGTTCATGCGCACGCGCTTCGCCG ACGAGAAGGTGGCGCTCGTCGCCGTCGAGGAGGGCGAGGACGGCGGGGAT GGTGGAGCCGAAAGGGGCGACGGGAAAGCGGGGAAAGGCGGCGGCTGCCA CAAGACAATGGAGAAGAGGAGGGTGAAGGATGAGAAAGTTCCCGGCGGTG ATGGAGCGCCGGCGAGTGCAGCGGTAACCAAGAGCAAGTTTCAGAAGGTA CGACCATCGATTTCTCTCTCAAGTTATGTGTTTTAAGCCTTTCTTTTAGG GAAATACAATTCTCTATCTAATATATATGTGCAAATTCTTGATCTAGATC CAACCTTTTAAATTTAGTTCATTGATTCAAAATCTTGATAAAGGTCTGTT TGGTCTGTGACAAAAAAAATTGTTTTTATCGAATAGGTACAATGCTTAGA AGAAAACACAACTTAATGAAGCGGCACAACACCTGCCCATTCCGCTAAAA AACACAACTCAAGGCAATCAATTGCACGTGAATGTCCTACCTGCTCCATT CTCCTTCAAGTGGGTCTTATACAAAGCTTGCAATAATTGTAATCGTCAAA TCTTGGTTGCTAATTTGTAGAAAAGTTTTACATATGTCACATAAATGATA TTAATTTTGCTATATTTTATTTCACAAAAATTGCTATATTTTGATAATCT TTATTAATTCACGTGGCATGACCCAACTAGTTCTTTTTTAAAAAAAACTT CTAACAAAGGAATTAATTAGCTAATTCCTCCAAGCCAGTATATATGGTTT CTTGGTACCACTATGTACCAAACTATAGGTCATTTTAGATTTTTTAGATA CATATAGATACACGATATGTCAAGATACATAGTAAAAGTATCTAGAAAAA TTAAAATAACCTATAAATTGAAAACGGAGGGAGTACTATTTTAAAGCAAG AGTATATCGAAAACCATGGGAATGTCCAAAACAGGAAGGGCAGAGAGATT TTTCTAGAGCCTAAGCAATCTTATCCAAGAATCTTTTTGATGAAACGTCC ACTTATGTTATAGATCTGGCACACCAACTAGGACTAGGAGTCAAGTTGTT GTTAGAAGTGGGGGTAGCGAGTTGACACTTCCTTTTGTTTGCAATCTCCT GTCAAGTGTTATCTTTATGGCTCATTGCATTTGTCATGTTATCCTTAGCC TACAAATTGGACTTGATCTGACGGGACTTTTTTTTTAATCATTGAACCTC CCTCTATCTCTTCTCTCTTACTGTATATACATAAAATGATTCTGTGCATG TACGTATGTATTATGCAAGTCCCTGTAAAAGGGTCTGTTTGGTTCGCCCT ATTAAACTTTAACAGATATTGACTATGGGGTTGACCATAGGGTGTTCGGA TATTAATAATGGACTAATTAGACTTAATGGATTCGTCTCGTAAATTATTG TCAATCTGTGCAATTAGTTTCGTAATTAGTCTATGTTTAACACTCCATAC ATGGGTCCAAACATTAGATGTGATAGGTGTTAAAAAAACAAGAGAACCAA ACACCCTCTAAGATAATCTCTGGAGAAATATTTTTTTTTGTTTAGTAATC ATTTGAAGAACCTTCTACTCTTTTCAAAATTCCATATAATTGGTGCCATT ATATTCTTGAATTTACAAATTGATTAGATGGTGTTTTTTTTTCCATTTTG TCGAATTCAGAAAAATGATGAGCCAGTTCTGAAACAGAGAAGCGTTAATT TTGCTCATTTAATTTGCAGATCCTCCAAATCTTCCACAGGAAAGTGTACC CTGAGAGCGCGGCCCTGGCGCGGAACCTGACCAAGAAGAGCCGCAAGCGC GGCAGCGGCGGCGCCGACGAGCCCGCCGAGCCGTTGTCGTCCAACAAGCT CCGGTGCCGCAAGGAGCATCGCGCGCCGGGGTTCGGCTGCTGCGCCAACC GCGCCTCCTTCGGTGGCGCCGCTTCTCCCATCCACGACGACGACGAGGAG CTCCACGGCAGCAAGAGCGGCCACTGGATCAAGACCGACGCTGAATGTGA GTGAGCGCGTATTCATCTTTCATTTCAGCCATCCCCATCCATACTTACAC CTTGCAATCACAGCACAGCACATATCTATCTCATCCTAATCCACCAATAA TTAATTTGCAGTCGCAAATTATCGGCAAAGAATAGAATCTTCGGGAGCTA TCAATTCAGTTTGACTGTGCCATGATGCATGTAGCCGTGCCTTATGCTGT GTACTGAGCACTGACTGGACATCTCTTTTTCTCTGACTGGATGCAGACTT GGTGCTGGAGTTATAGAAGGAGAAACAACAAGAGAAAGCCAGAATCTGTT GGCTGGTCAATATCAGTATATTGAGCATGTTTTTTATTATGTTTGTGTGC TTGCTTGCTCTTCACCAAAAAAAACCTTTATATATATATATATATATATA TAATTCATGTCACTACCAGATGGATGAGTTGTATGTGTCCGTCTATCTGC TATAAAGGGGAA
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Coding sequence (CDS) from alignment at Sh_004L16:4881..11242+

>Sh_004L16_t000010 ID=Sh_004L16_t000010|Name=Sh_004L16_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=1242bp|location=Sequence derived from alignment at Sh_004L16:4881..11242+ (R570 Sugarcane cultivar)
ATGTATGATCAGCTCCTCGGTTGGATGCACCGGAAGTTACGACAGAATAG
TAATGATGTGTTCAAAGAGTTCAACAACGGTGGAGGTAGGACCTGCAACT
GCATCACCGGGCTGGCCTCGCCGGACCCGGCCACCTTCCTCGCCTCCGCC
AACGAATACTTCGCCGGCGACCACGACTTCACCAACAATCATTCATCGCC
GCCGGACGCCGACCTCTTCACCTTTGGCGGCAGCGGCCTCCTCACCATTG
GCACTCTAGGCATCGCCGCTGTCGCGGTCCCTGCAGACGCTGACGACGAC
GATTTCGACGTCGACGTCGACTCTGACGACAACGACGACACCGCGGACGA
AGGGGACAACAAGGTCGACAGCGCCGTCACGCCCACATTCACATACACGG
CGTCGCCTCCGCCAGAGGCCGCCGCTGTCGTTGATGAGAAGGCTGCAGTT
GCCGTGGTGGAGGCCATTGCCGAGAAGGACGACGACACCACCACGGAGGA
CGACCTCATGGTGGTGAGCGCGGAGCTGGAGAAGGTTCTCGGTGGCCGCA
ACAGCGGCGCCGCCGGCGACCTGGTGGCGTCGGCGCGGGTGAGCTTCGCC
ATGGGCGGCGTGGACTGCCCGCTGCAGGGCTTCCTGTTCGGCTCCCCGGT
GAGCGACGCCGCCGAGTCGCGCCTGGAGCAGCCGCGGGATAGCAACGGCG
GCAGGCGCACCTCGCTCGGCGAGCTGTTCATGCGCACGCGCTTCGCCGAC
GAGAAGGTGGCGCTCGTCGCCGTCGAGGAGGGCGAGGACGGCGGGGATGG
TGGAGCCGAAAGGGGCGACGGGAAAGCGGGGAAAGGCGGCGGCTGCCACA
AGACAATGGAGAAGAGGAGGGTGAAGGATGAGAAAGTTCCCGGCGGTGAT
GGAGCGCCGGCGAGTGCAGCGGTAACCAAGAGCAAGTTTCAGAAGATCCT
CCAAATCTTCCACAGGAAAGTGTACCCTGAGAGCGCGGCCCTGGCGCGGA
ACCTGACCAAGAAGAGCCGCAAGCGCGGCAGCGGCGGCGCCGACGAGCCC
GCCGAGCCGTTGTCGTCCAACAAGCTCCGGTGCCGCAAGGAGCATCGCGC
GCCGGGGTTCGGCTGCTGCGCCAACCGCGCCTCCTTCGGTGGCGCCGCTT
CTCCCATCCACGACGACGACGAGGAGCTCCACGGCAGCAAGAGCGGCCAC
TGGATCAAGACCGACGCTGAATACTTGGTGCTGGAGTTATAG
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