Sh_004L16_t000020

Overview
NameSh_004L16_t000020
Unique NameSh_004L16_t000020
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length819
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L16contigSh_004L16:20333..23927
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to ABC transporter family protein, expressed
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L16_g000020Sh_004L16_g000020R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L16_p000020Sh_004L16_p000020R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L16_t000020 ID=Sh_004L16_t000020|Name=Sh_004L16_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=819bp
ATGCTCGCCGCCGCCGCCACGGCGGTGGCCGTCCCTCCCGCGGCTTCTTA
TCGTTTTCCAGCAAATACGGACAGGAAATGTAGGATTTCTTGGAGCTGTC
GGGCGGCAAGAGTCGAGGCTGCGTACTCCCAATTGGAGGTGAGAAAAGTC
ACCTATCGACCTCCTGGAACTGAACAGAACTTGTTGAAAGAAATTAACCT
CTCTCTTCGGGAGAAAAGTTTTGGTTTGATATTTGGACGGAGTGGGAGTG
GAAAGACCACCCTTTTGCAGCTTTTGGCTGGTCTATCAGAACCTACCTCT
GGGTCTATTTGCATTCAGAAGTATGATGATACTGGGAATCCTATTGGCTT
GCCTGAACTGCTAACTTCTCAACGAGTTGGAATTGTATTTCAGTTTCCTG
AGAGGTATTTCTTAGCAGATACTGTACTTGAAGAAGTTACTTTTGAATGG
CCTAGGCAAAAGGCGGACCTCCTATTAAAAGAACAGCTTGCTTTAAATCT
TCAAAATGCCTTTAACTCGGTTGGTCTGACAACCATCTCATTAGATGAAG
ATCCACAAGCTCTAAGTGGTGGATTTAAGAGGCGACTTGCTTTAGCAATT
CAATTGGTTCAAACTCCTGATCTGTTACTGCTTGATGAGCCACTTGCTGG
TCTAGATTGGAAGGCTCGGGCTGATGTTGTGAATCTCTTAAAGGACCTGA
AGAAACACCATACCATACTGGTTGTAAGTCACGATCTAAGGGAACTATAT
CCACTAGTGGATTACTCATGGCGAATGGAAATGGAGGGAAGTTTGAAGGA
GGAAGCTTTGCCTGTGTAA
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protein sequence of Sh_004L16_p000020

>Sh_004L16_p000020 ID=Sh_004L16_p000020|Name=Sh_004L16_p000020|organism=R570 Sugarcane cultivar|type=polypeptide|length=273bp
MLAAAATAVAVPPAASYRFPANTDRKCRISWSCRAARVEAAYSQLEVRKV
TYRPPGTEQNLLKEINLSLREKSFGLIFGRSGSGKTTLLQLLAGLSEPTS
GSICIQKYDDTGNPIGLPELLTSQRVGIVFQFPERYFLADTVLEEVTFEW
PRQKADLLLKEQLALNLQNAFNSVGLTTISLDEDPQALSGGFKRRLALAI
QLVQTPDLLLLDEPLAGLDWKARADVVNLLKDLKKHHTILVVSHDLRELY
PLVDYSWRMEMEGSLKEEALPV*
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mRNA from alignment at Sh_004L16:20333..23927+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L16_t000020 ID=Sh_004L16_t000020|Name=Sh_004L16_t000020|organism=R570 Sugarcane cultivar|type=mRNA|length=3595bp|location=Sequence derived from alignment at Sh_004L16:20333..23927+ (R570 Sugarcane cultivar)
GGAAGCCCACACCGACACCGCACGTGCTCCTTCCCGGCCATTCTCCCGAT CCTATCAGCTAGCGGTGGCCTCCGGCGGCTAACCGGATTTGACTTGCGGC TGCCGCCGCCCGCCTTTGGTCGCGGTCCCCCACCTCAATCTCCTGGCCCA CTACTACCCGAGACTTCCTTGAATCGTCGATGAGCGCTCGAGCGAGCCCG TGACGGTTGCTCCGAAGCTCCGTTCTACGCCATGCTCGCCGCCGCCGCCA CGGCGGTGGCCGTCCCTCCCGCGGCTTCTTATCGTTTTCCAGCAAATACG GACAGGTACGGTGGGCTGTTCTTGAACCAGCCTTTTCTTTTCTCAGGGTG ATGTTCCTCCATGAAAATTCGTCTGTAATTATTCTATCACAGGAAATGTA GGATTTCTTGGAGCTGTCGGGCGGCAAGAGTCGAGGCTGCGTACTCCCAA TTGGAGGTGCGCATTGGCCTATTTCCCTGCATTCTTTTGATTTTTTTTAG AGTTGGGGTTGGGGTGCTCCCAATTCGATCTAGGAATTCAGGTATGCTAA GATGGTGTTTGGTGTGAGTGGGCTGGTGTTTACACCCAGAGATTACCAAG CTGTGGAATGTAGGTGAGCTTTGGATCTTCAGTTTCACCAAATACCCGGC GGTGTGCCTGGAACAAAAATTTGTATTAGTTTTACAACAACCTTGGCATT TTAAGGATAGGTTTGGCAATCAGATTGCTCAGGTCCAATAAAGAACCAGT GTTGGGCATCGTCATGCATGACTTAATAGCTTACCACATTGCTTTCACAG TTTGGTGTTCCTAAATTCCTCCAATGTTGTATACAATGCATCATATTACT CTTTTTGTCTTTTCTGCTAGAAGTTTGCATGACTACATACATCTAGAAAA GAGTCTTCCAGCTAGTAGCATCTGCACAATTTGCCATCCTAAATAAGTTC ATCCTTTTAAATTAATTATCAAATAGATTGAACCACAATTTCTTTCAGGT GAGAAAAGTCACCTATCGACCTCCTGGAACTGAACAGAACTTGTTGAAAG AAATTAACCTCTCTCTTCGGGAGAAAAGGCAAGCATATTTGCTCTGGCTT AATTATATTTCTGGTGGCTTTTATATACCTAACTCTGTATTTGTGCAGTT TTGGTTTGATATTTGGACGGAGTGGGAGTGGAAAGACCACCCTTTTGCAG GTGCGCATTGAAACGCTACATAACATTACTAAATTTCCTTGTGATCTGTC TTCCATCGTAATGTAAAATCTTGGTTTCGCAGCTTTTGGCTGGTCTATCA GAACCTACCTCTGGGTCTATTTGCATTCAGAAGTATGATGATACTGGGAA TCCTATTGGCTTGCCTGAACTGCTAACTTCTCAACGAGTTGGAATTGTAT TTCAGTTTCCTGAGAGGTTTGAACTACTGCTTTCATGAAAGTTATGCAAA AGTGGACATGCATACCTATAAACTGTGGTGGTTCAAAAGTTTACTGAACA TAAGGACTATCATCATCTTGTTGTAGGTATTTCTTAGCAGATACTGTACT TGAAGAAGTTACTTTTGAATGGCCTAGGCAAAAGGCGGACCTCCTATTAA AAGAACAGCTTGCTTTAAATCTTCAAAATGCCTTTAACTCGGTAATGCTT ACCTCACAAAATTCTATGTGCCTAATGGAACACCTTTACCATTTTTAGAT TTACGAAATTTCTTGAAACACATTTTTTTTTGCAATTTAACTTGATGTCA TGTGAAACATACCAGGTTGGTCTGACAACCATCTCATTAGATGAAGATCC ACAAGCTCTAAGTGGTGGATTTAAGAGGCGACTTGCTTTAGCAATTCAAT TGGTATTATACTTTTTTTGTTTACTATGAGTTGATGTTCAATCTCTCCAC TTTATTTTTTTTGGAAACAAGAATTCTTATTGTTTTTTGGCCGTCTCCTT AGCTTCATGGTAGTGGCCTGGTGGTTTTGGTCGTTGACTTTATTTTTTCT ATCGAGTTTGTTAAGCCTCTATCTTTTTTAATTTTCTATAGGTTCAAACT CCTGATCTGTTACTGCTTGATGAGCCACTTGCTGGTCTAGGTATGTGATT ATATATTAATCAGATCAATTGTACATGATTAAATTACTATATTGATCAGA TCAATCATTGAACATCGCTTCAAAAGTTCAAATCTTGTTCACTCATTCAT CTCTGCATGTGCGCAATATCATCTCTGTTACCTCTTTCTAGGATTCATGT TAAGAAGCAAACAATATGCTACTAACTTCATATTTTAAATCTCAGATTGG AAGGCTCGGGCTGATGTTGTGAATCTCTTAAAGGACCTGAAGAAACACCA TACCATACTGGTTGTAAGTCACGATCTAAGGTAATTTTGAAACCACAGTA AATGGGAGAGAACGTTTTCTATTTGTATGCCACATGAAGAATAGCAAAGC AAATGGTTGAGAACAACAAAGTAAATGATTTATGAACCAAGCTGGTCTTT CTGTGCATCCATTCTGCTGAAAGGAAACAGCTTCTAATGACACAGATTAA CTATCAAATTGCCTTATTCAACATAATTTGCAGGGAACTATATCCACTAG TGGATTACTCATGGCGAATGGAAATGGAGGGAAGTTTGAAGGAGGAAGCT TTGCCTGTGTAAACATGTGCTTGTCGGTATAGCTGTCAGACATGGTGGCA TGTACATATTGGTCATCCGAATCTAGTAAGATCAACTGCTTTTAAACTTA GATTTTGTCAGCTCGGAAATTTCTTGAAGATACAATGGAGTCAGAGGTGG CTGTGAATGAGTTATTTGATAATACATGGTGACTTGTGCAGATGGAGAAT CAGCAGACGAAAAATGCTAGAAAAATTCATTAGAGGGATCACGAATGTTA GTTCTGAACTTTGACTGCTGAAATGGAGAACAGTCTGTGTGATGCAGACA TTGTCGAGGTACCGTGATCGTTGAACAGTGCTATTGAAATTTAGATTCAG GATCTAGGGATAGCTCCTTTTTTGCACACATTCATAGCAAGGGTTGCAGA AGGCCTGTACACTTTGAAAGGTGGGGTCAAAATGATGCTGATGATGGTTC GCAAATGATATACTTTGTTGACATTTACACTGAAGAGATTCAGAGAACAT CATTTACTTGCACTATCAATAGTCAGCATCATTCACAATTTGTTGTTTCT TACAAACTTATTTGTCTGGAAGAATATATGGCACACATGTAGATTCTTTT CCTCCAAAGATCTTTGACCTGCTGTTACCACCACTTCTCTCTATGGCTTC TGAACACGGGAGGAGCAATCTCAGTCATATATGAGCCTTGGTTCAAAATG GTGAGCAAAATTCTCTTCCCATTGTAAATCCAGGCATACATTTTGTCCTT AGCACGATATACTCTCCTTATGCTTCAGCTTCACGCCATGGTTATATATA CTATATTCAAAAGTCGTGCTGTAAATGTGTAGTCACTTTTTACAAACAAA GTAGCCTACTGAGTGTTACTTGTGCCACATAGTTTACCTTCAGCAATGTG CATGCATGTTCAAGACAAGAAACTTTTCTTTGCCTTCTAGACTCC
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Coding sequence (CDS) from alignment at Sh_004L16:20333..23927+

>Sh_004L16_t000020 ID=Sh_004L16_t000020|Name=Sh_004L16_t000020|organism=R570 Sugarcane cultivar|type=CDS|length=819bp|location=Sequence derived from alignment at Sh_004L16:20333..23927+ (R570 Sugarcane cultivar)
ATGCTCGCCGCCGCCGCCACGGCGGTGGCCGTCCCTCCCGCGGCTTCTTA
TCGTTTTCCAGCAAATACGGACAGGAAATGTAGGATTTCTTGGAGCTGTC
GGGCGGCAAGAGTCGAGGCTGCGTACTCCCAATTGGAGGTGAGAAAAGTC
ACCTATCGACCTCCTGGAACTGAACAGAACTTGTTGAAAGAAATTAACCT
CTCTCTTCGGGAGAAAAGTTTTGGTTTGATATTTGGACGGAGTGGGAGTG
GAAAGACCACCCTTTTGCAGCTTTTGGCTGGTCTATCAGAACCTACCTCT
GGGTCTATTTGCATTCAGAAGTATGATGATACTGGGAATCCTATTGGCTT
GCCTGAACTGCTAACTTCTCAACGAGTTGGAATTGTATTTCAGTTTCCTG
AGAGGTATTTCTTAGCAGATACTGTACTTGAAGAAGTTACTTTTGAATGG
CCTAGGCAAAAGGCGGACCTCCTATTAAAAGAACAGCTTGCTTTAAATCT
TCAAAATGCCTTTAACTCGGTTGGTCTGACAACCATCTCATTAGATGAAG
ATCCACAAGCTCTAAGTGGTGGATTTAAGAGGCGACTTGCTTTAGCAATT
CAATTGGTTCAAACTCCTGATCTGTTACTGCTTGATGAGCCACTTGCTGG
TCTAGATTGGAAGGCTCGGGCTGATGTTGTGAATCTCTTAAAGGACCTGA
AGAAACACCATACCATACTGGTTGTAAGTCACGATCTAAGGGAACTATAT
CCACTAGTGGATTACTCATGGCGAATGGAAATGGAGGGAAGTTTGAAGGA
GGAAGCTTTGCCTGTGTAA
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