Sh_004L16_t000030

Overview
NameSh_004L16_t000030
Unique NameSh_004L16_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length639
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L16contigSh_004L16:56078..59401
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteWRKY transcription factor (Fragment)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L16_g000030Sh_004L16_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L16_p000030Sh_004L16_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L16_t000030 ID=Sh_004L16_t000030|Name=Sh_004L16_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=639bp
ATGGAGAATTATCACATGCTCTTTGGGGCGACGACGACGCGTGCGCAGCC
GTCTTCCGCCACTCCCAACTCCTACAACTTCATGGCCACTGCTGCTGGCA
CCAGCGGCGGCGGCTTGCGCGACCACGACCGAGGCCAGCACAGCGGGCAT
GGCGGCGGATCATCGTCGTCCTTCTTCGCGGAGCTGTCCAACAACACCGA
CTCCAAGGATGGTGGTGCACCAGTAGCAGCCGATAGTGGCCGTGGGGAGT
CGTCAGCTGCAGCCGGCGAGGTGGACAGGCCGGCGGCCAGGAGGAAGGGG
GAGAAGAAGGAGCGCCGGCCACGGTACGCCTTCCAGACGCGCAGCCAGGT
CGACATCCTCGACGACGGCTACCGGTGGAGGAAGTACGGCCAGAAGGCCG
TCAAGAACAACAGGTTCCCAAGAAGCTACTACAGATGCACTCACCAAGGG
TGCAACGTGAAGAAGCAGGTGCAGCGGCTGTCAAGGGATGAAGGCGTGGT
GGTGACCACGTACGAGGGCACCCATACACACCCCATTGAGAAGTCTAATG
ATAACTTCGAGCACATTCTCACCCAGATGCAGATCTACACTGGCATGGGA
TCAACCTTCAGCAGTAGTGGCCACAACATGTTTCACTGA
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protein sequence of Sh_004L16_p000030

>Sh_004L16_p000030 ID=Sh_004L16_p000030|Name=Sh_004L16_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=213bp
MENYHMLFGATTTRAQPSSATPNSYNFMATAAGTSGGGLRDHDRGQHSGH
GGGSSSSFFAELSNNTDSKDGGAPVAADSGRGESSAAAGEVDRPAARRKG
EKKERRPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNRFPRSYYRCTHQG
CNVKKQVQRLSRDEGVVVTTYEGTHTHPIEKSNDNFEHILTQMQIYTGMG
STFSSSGHNMFH*
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mRNA from alignment at Sh_004L16:56078..59401+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L16_t000030 ID=Sh_004L16_t000030|Name=Sh_004L16_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=3324bp|location=Sequence derived from alignment at Sh_004L16:56078..59401+ (R570 Sugarcane cultivar)
CCTCTCCCTCTCCCTTCCTCACAAAGCTCTCTAGTTTCCGCGCCCGCCCA GCACGGCGGCGCAAACTAGCGAGCAACTGAGCCATGGAGAATTATCACAT GCTCTTTGGGGCGACGACGACGCGTGCGCAGCCGTCTTCCGCCACTCCCA ACTCCTACAACTTCATGGCCACTGCTGCTGGCACCAGCGGCGGCGGCTTG CGCGACCACGACCGAGGCCAGCACAGCGGGCATGGCGGCGGATCATCGTC GTCCTTCTTCGCGGAGCTGTCCAACAACACCGACTCCAAGGATGGTGGTG CACCAGTAGCAGCCGATAGTGGCCGTGGGGAGTCGTCAGCTGCAGCCGGC GAGGTGGACAGGCCGGCGGCCAGGAGGAAGGGGGAGAAGAAGGAGCGCCG GCCACGGTACGCCTTCCAGACGCGCAGCCAGGTCGACATCCTCGACGACG GCTACCGGTGGAGGAAGTACGGCCAGAAGGCCGTCAAGAACAACAGGTTC CCAAGGTTAGTACGTATTTGGTGCACAATTCATAGATGGTACAGTCAATA ATCAAATTCTTCCTCATATATAGTACAATCAAAATGTTTGGTGTTTCTCA TCAACGACTACTATGTATGCATGCTGATCCATTTTTGTGATCGATCGGCC TGCGATTTTGATTTCTGTTGCTGCTTGGGGATTTATTATTTCTCGATTAC TGGTTTAATTCGGTGTGATGCGATCCCTTGTTTTTAAAAGTGTTAATAGT AGGGTTGGGCTGCAGAAAGTAGGTGAGGTGAGATGGAGTCCCAGTGAATC TTCCAAGCTCTGCTAGTGGTTGCTTATACATACATAGGATAAGGACACAT CTCATCTCTCATCCAACATCCTCATCATCTAGATGAAAACGACTCCTAGC TTCACATGTTTTTGCTGGTGGGCATCGATCATTCAATAAATAGGAGCCCG ATGGCGATCGAATTTGACCAGAAGTTATTTCGTCCACCCACCGGGTTTAA CCGCAGCATATATTATATTAATTTCACTCTTGGATTTATCGATGCTTCGT TAGCTACTAGCTCAAGCTATTCTTCCGTCGCTATCTTTTATATTCTTCAG AGAACAAAAGTGGTTTCTTTGGGCATCCAAAGGATAAGGGCACCCTTCTT TTTTCCAATTTTTGGGCCATAAAGTTCACAGATTCAGCATCAACTGTTGC TGGAGGTGCTTGAACACTCCAAAGACTTCAAATAATTTATTAGACGAGTA AATTTGACGCAGAAAAAATAACTACATATATGGAGTAAAGAGAAATGGCC AAAAGTAAATTTATTTTACCACTGTCTAAAAAAATGCAACTATGTAGGGC ATTAGCGTTTTCTTTTTTAAAATTTACAAGATCAAAAGGACCTTTAATTT GCCACTCCAAAAGCACTTGATGCCTTCTTCTAAAATTAAGGCTTCTTCAT TGACGTGGGTCTATGGTTTTTTTTTCTATCCTTGCTCGCCTCCTCTTCTT CTATGAAAAAGTTTGTCATGACAATCATATAGCCATATATACTCTATACC TAGACACATTAAGCAAGAACTGCACATATCCCTACACATCATATGTGCAT CAAGGACCACAGATGTAATACTTACGTTTCATTTGTTCATGTCTGTGCCA ACCATCTATGCTAGCTAGCAAAACACTAATTGAGAGTCTGAGAGAACTAA ACAGTAATTACGTCATGAACAAAATCTGATGCATGCAAGCACATATAGTA TTACGCTTCTAAATTGTTATCCATCACTTATATTGGCTGCCGATTGGAGT TCTTTTCATGATGAACATAAATAAGATTAAAACTGACCATGCAACTATGG AGACATTTAAGATTTTGCATTTGTAAGACATAAGCCTTTATCATGCCAAA GTAACAATGATATGTGGTATATATGAATTTGGGGAAAGGATATATATACT GCAAATTCGTAAATCCCACATTAAATTTGTCGTTCTTTAAATAAAAGAAC AAAAATAATAACTATTAGTGATGAGGTATAGTATATGTATAAAATTTTCT AAAAAAACAGTCATCGTGCTTCAGCGGATTATATATCTACACAACTCTAG AACCCTTGGTATATCCATTTTCAACTCAAACTTCTATAGAAATAGAAATA TATAGAAACACTTAATATCACACAGATCAGTGCTAATCGTAATAAGAAAA AGGGACCCCTTTTTTATTGCATTCACAGAATTAGGCATGCAAATAATACT ACATTCCTCTATCTTATTTCTACATCCAACAATATAATGAGAACAAGATC AGTTAAGGAGCAGCAGTTAATGAACAGCGCACTCTTCTAAATGAAGATAT TAGACCTCACCACAACATGAAATTGCAGATAAATTATACATTCTTCTTAG AGAGAAATGAGTGCATGCTTCCACCGAATATATAGGTTGACATACTTAGT CAAGCAACAATACAGAATCTTGATACACATATACAAGCCAAACATGTTCA ACTTTTGTGTCCATCCGTTTGTACATACATGCATGGATATACAGGCATAT ATCTCTTTCATGCACATTTTCACTTTGTTTTGCTATTACTTTCTTGATTC ATGCATCCGGAGTGAACTAATTCTTATTCTTTTCGCACACATTTATGGAT GCAGAAGCTACTACAGATGCACTCACCAAGGGTGCAACGTGAAGAAGCAG GTGCAGCGGCTGTCAAGGGATGAAGGCGTGGTGGTGACCACGTACGAGGG CACCCATACACACCCCATTGAGAAGTCTAATGATAACTTCGAGCACATTC TCACCCAGATGCAGATCTACACTGGCATGGGATCAACCTTCAGCAGTAGT GGCCACAACATGTTTCACTGAATGAACCGCCAAAATCACTTCTAAGCATC CATGCACCGTGCAAACTAAGAAACAAAATCGATCCATAGATTTTATTTAT TTGTACATTAAGTCTTAGATGTTTAAGAGATAAATAAGCGTGATTTGGTA GCTAGATGCAGGTATTATACTCACGCAATGGCTCTTTTGCTCTTATTGAT CTTCTTTTGTTTTTAATTTGCAATTGTAGGCCAGGGATAGAGACTGATTA CACCCTCAGAAATTAAAAAGATGTTCGATTACATTACAGTTAAAAATGGA TACCTTTTATATATTGGGCCATGCATGGCACCATAAGTGTACTTCTCCAT CGATCATATCATATGCGCTTACAAGGAAGGGAATATATTAGCACTAATAT ATATGGCCTTTGCGTTAGCAAATTTACTTTCAGGGAAAACTAGCCACTAC TAAATATTTTCTTCCATCTAACTA
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Coding sequence (CDS) from alignment at Sh_004L16:56078..59401+

>Sh_004L16_t000030 ID=Sh_004L16_t000030|Name=Sh_004L16_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=639bp|location=Sequence derived from alignment at Sh_004L16:56078..59401+ (R570 Sugarcane cultivar)
ATGGAGAATTATCACATGCTCTTTGGGGCGACGACGACGCGTGCGCAGCC
GTCTTCCGCCACTCCCAACTCCTACAACTTCATGGCCACTGCTGCTGGCA
CCAGCGGCGGCGGCTTGCGCGACCACGACCGAGGCCAGCACAGCGGGCAT
GGCGGCGGATCATCGTCGTCCTTCTTCGCGGAGCTGTCCAACAACACCGA
CTCCAAGGATGGTGGTGCACCAGTAGCAGCCGATAGTGGCCGTGGGGAGT
CGTCAGCTGCAGCCGGCGAGGTGGACAGGCCGGCGGCCAGGAGGAAGGGG
GAGAAGAAGGAGCGCCGGCCACGGTACGCCTTCCAGACGCGCAGCCAGGT
CGACATCCTCGACGACGGCTACCGGTGGAGGAAGTACGGCCAGAAGGCCG
TCAAGAACAACAGGTTCCCAAGAAGCTACTACAGATGCACTCACCAAGGG
TGCAACGTGAAGAAGCAGGTGCAGCGGCTGTCAAGGGATGAAGGCGTGGT
GGTGACCACGTACGAGGGCACCCATACACACCCCATTGAGAAGTCTAATG
ATAACTTCGAGCACATTCTCACCCAGATGCAGATCTACACTGGCATGGGA
TCAACCTTCAGCAGTAGTGGCCACAACATGTTTCACTGA
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