Sh_004L16_t000040

Overview
NameSh_004L16_t000040
Unique NameSh_004L16_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L16contigSh_004L16:77843..78768
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
Notesimilar to Expressed protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L16_g000040Sh_004L16_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L16_p000040Sh_004L16_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L16_t000040 ID=Sh_004L16_t000040|Name=Sh_004L16_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=444bp
ATGTATGCATTGATATTTAATACGTTGGTAACGAGCATATCAGAGCTATC
TGCACCCCTGTTTGCTAATACGTCTGCTTTGCTATCATTACTACACAGAA
TGGTGATCCTCTGTCCAGGGTGTGTTGCTCCATCAGTTCACCATAATTTT
CTGCCCAGATGGTTGCTGCTGAACAATAGCTCGAGAATGTATTGCCGTGT
CTTTTCAGACAGAATGAAACCAAAAAGACAAAATAGACATCAGAGGATGG
CTTGCTTCTCCAAGGGCTCTTCGTTTCAAGATCTGGTGCCCTCTGTAAAG
CCTTCACGCCTTCTTTTACCCTTCCAAAGTGGTTCAGTTGATGTTGGCAC
TTTCAAGGGGTCAAAACTGAAAAGGATTAAAGAAGTCTGGATCGGTCTGG
AATCAGGTACGTTCCATTTCATGTTCTTTGCAAATATAATGTAA
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protein sequence of Sh_004L16_p000040

>Sh_004L16_p000040 ID=Sh_004L16_p000040|Name=Sh_004L16_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=148bp
MYALIFNTLVTSISELSAPLFANTSALLSLLHRMVILCPGCVAPSVHHNF
LPRWLLLNNSSRMYCRVFSDRMKPKRQNRHQRMACFSKGSSFQDLVPSVK
PSRLLLPFQSGSVDVGTFKGSKLKRIKEVWIGLESGTFHFMFFANIM*
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mRNA from alignment at Sh_004L16:77843..78768+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L16_t000040 ID=Sh_004L16_t000040|Name=Sh_004L16_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=926bp|location=Sequence derived from alignment at Sh_004L16:77843..78768+ (R570 Sugarcane cultivar)
ATGTATGCATTGATATTTAATACGTTGGTAACGAGCATATCAGAGCTATC TGCACCCCTGTTTGCTAATACGTCTGCTTTGCTATCATTACTACACAGAA TGGTGATCCTCTGTCCAGGGTGTGTTGCTCCATCAGTTCACCATAATTTT CTGCCCAGATGGTTGCTGCTGAACAATAGCTCGAGAATGTATTGCCGTGT CTTTTCAGACAGAATGAAACCAAAAAGACAAAATAGACATCAGAGGATGG CTTGCTTCTCCAAGGGCTCTTCGTTTCAAGGTACTGTCTGACAAGACTTT TGATGTTGTCTCTCCAAGCTTATTTTTGTGCACTGGTAAACAATGTATTT CTATGTGATTGTTCTTTGTAATATACCCATCAATGCAGGCCATGTTCGTT GGGCTTATCAGCCGTACTTTTTTAGCGAACGAACAATATTTTCCTCTCAT AACAAATCAGCGAACGGTACTTTCAGCCTTGGCTTTTCAGCGAAGCGAAC AGGGCCGTAGTATGCATTCATATCGTGTAGTTGTTCGCTTTCCTAGGGCA TGGAATCCTCATGCGACTGTTTCTGTTTCCACAACGAATCATATTAACTT TTCACTTTACCGGCTGCAATGTAGTTGTAGTTTGTTTTCTCCTATTTAGT ATCTCATTGTATTATTATTGTTATTGACAACATGAAAGCTGTGTTTCTTG GTTGTGAAAATTTATCATTCTATCCATACCATTTAGTGACCATTGTTCGT TCAACTCTGCAGATCTGGTGCCCTCTGTAAAGCCTTCACGCCTTCTTTTA CCCTTCCAAAGTGGTTCAGTTGATGTTGGCACTTTCAAGGGGTCAAAACT GAAAAGGATTAAAGAAGTCTGGATCGGTCTGGAATCAGGTACGTTCCATT TCATGTTCTTTGCAAATATAATGTAA
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Coding sequence (CDS) from alignment at Sh_004L16:77843..78768+

>Sh_004L16_t000040 ID=Sh_004L16_t000040|Name=Sh_004L16_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=444bp|location=Sequence derived from alignment at Sh_004L16:77843..78768+ (R570 Sugarcane cultivar)
ATGTATGCATTGATATTTAATACGTTGGTAACGAGCATATCAGAGCTATC
TGCACCCCTGTTTGCTAATACGTCTGCTTTGCTATCATTACTACACAGAA
TGGTGATCCTCTGTCCAGGGTGTGTTGCTCCATCAGTTCACCATAATTTT
CTGCCCAGATGGTTGCTGCTGAACAATAGCTCGAGAATGTATTGCCGTGT
CTTTTCAGACAGAATGAAACCAAAAAGACAAAATAGACATCAGAGGATGG
CTTGCTTCTCCAAGGGCTCTTCGTTTCAAGATCTGGTGCCCTCTGTAAAG
CCTTCACGCCTTCTTTTACCCTTCCAAAGTGGTTCAGTTGATGTTGGCAC
TTTCAAGGGGTCAAAACTGAAAAGGATTAAAGAAGTCTGGATCGGTCTGG
AATCAGGTACGTTCCATTTCATGTTCTTTGCAAATATAATGTAA
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