Sh_004L16_t000050

Overview
NameSh_004L16_t000050
Unique NameSh_004L16_t000050
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L16contigSh_004L16:78827..80284
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteDoubtful hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L16_g000050Sh_004L16_g000050R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L16_p000050Sh_004L16_p000050R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L16_t000050 ID=Sh_004L16_t000050|Name=Sh_004L16_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=258bp
ATGAACGCTGCAAGAAGAACAGCAACCTTGTTCGCAAGGAACCCTGCAGT
GCCAACAAAGAGCTCGGTCGGTGTGAGTTCAAAACTGTCACCTCCAGACT
TCAGTGCAACAGCACCTGCAACCAGTACCAGCGATAGTATCAACCATGGC
CTCCTTACACCACTGAAACCTTTCACGGAGGGCTGCGCACTGCCAGCTTC
TGAAGGTGAACCGATCACGGGCAAACCATCAACCGATCTTTGGAGCAGCA
ACAGATAG
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protein sequence of Sh_004L16_p000050

>Sh_004L16_p000050 ID=Sh_004L16_p000050|Name=Sh_004L16_p000050|organism=R570 Sugarcane cultivar|type=polypeptide|length=86bp
MNAARRTATLFARNPAVPTKSSVGVSSKLSPPDFSATAPATSTSDSINHG
LLTPLKPFTEGCALPASEGEPITGKPSTDLWSSNR*
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mRNA from alignment at Sh_004L16:78827..80284-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L16_t000050 ID=Sh_004L16_t000050|Name=Sh_004L16_t000050|organism=R570 Sugarcane cultivar|type=mRNA|length=1458bp|location=Sequence derived from alignment at Sh_004L16:78827..80284- (R570 Sugarcane cultivar)
GTGTAGAAAATTTCTTACATAATGTTGATTTGGAGCAACGCCAAGCATTT TTCTTGATAGTTACTGTATATTTAGCTCACAAATATCATATTGACATACA ACAATGAGTACATGGTTCTCGTACAATCATCATGTTTTCCGAACTCATCT CTTGAGGTACCTGGTGTAGTCACGTTCCTGTTATCTGAGATCATCTTAAC AGTTAAGGGGGTGTTTGGTTTGAGGAGTTAAAGTTTAACGAATATTGTAG TACTTTCGTCTTATTTGACAAAAAATTTCCAATCTTGGACTAATTAGGCT TAATAGATTCGTCTCGTAAATTATTCCTAATATGTGTCGACATGTATGCA ATTAGTCTACATTTAGTACTTCATGCATTTGAGGGAACATTGATGTGATG AGAGTTAAAGTTTAACACATTGCAACCAAACAGGCCCTAAGTGTCCGATT TGCGAGTTCTACAACTCAAGTTTCTGACTTCTAATAAGTACCACAAGACT GGAACCCCTGCCGTGAACTGAACCCTTGCAAAGATGCCATGCGTGGAACC TGCTGTGGTGTTTGAAGTATTGATTGACTCAGTTACCAAGATGATATAGC AACAGGGTTCATTTTTCCGGTTCAGAAACTAGGACTTGCCCTTTGCACAT CAGCTAATTACCTTGGGACCTTGAAAACAGAGCTTCTATATATGAAACTA GTACGAACCTATTTTTAAAGTCCAGTTAATTGATATCCCCAGATCCATCT TCACTCTTCGAGTCACTTAGCATAGGCATGAACGCTGCAAGAAGAACAGC AACCTTGTTCGCAAGGAACCCTGCAGTGCCAACAAAGAGCTCGGTCGGTG TGAGTTCAAAACTGTCACCTCCAGACTTCAGTGCAACAGCACCTGCAACC AGTACCAGCGATAGTATCAACCATGGCCTCCTTACACCACTGAAACCTTT CACGGAGGGCTGCGCACTGCCAGCTTCTGAAGGTGAACCGATCACGGGCA AACCATCAACCGATCTTTGGAGCAGCAACAGATAGAGGAACCCACCAATG CCACCTATCAGGAACGAATAGGCAGCGCTGTCATTTGAAGCCAAGGTGAA GGCGGAGAAGCCTGTTATCACTATAGATGCATCATAGAGCAGCAGAGATT GTTTGAGGTTGGCGTACTCTCTCAACCCATCCTCTCTTATTTCCTTAATG CTTGAAGCTTTGCTTTCTGAGGATAACAGCCCTTCTTGAAGATCGGAAAG GCCAACTCCTGAGAGGTCAGTGACAGCCACAGGCCTTGCTTCAGCTACTG AAGCTCCATCATCTCCAAGAAATGCATTTATTTTCTCAAAAGTGTACTGC AAACCATTGAACTTCTGTTCAGGTGTTCCATTAATTTCTTTAGGTGGATC AACCGGTCCATGTATTACTTTCAAGCTCAAACCATATAATCTCCATGAAC CTAACCTT
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Coding sequence (CDS) from alignment at Sh_004L16:78827..80284-

>Sh_004L16_t000050 ID=Sh_004L16_t000050|Name=Sh_004L16_t000050|organism=R570 Sugarcane cultivar|type=CDS|length=258bp|location=Sequence derived from alignment at Sh_004L16:78827..80284- (R570 Sugarcane cultivar)
ATGAACGCTGCAAGAAGAACAGCAACCTTGTTCGCAAGGAACCCTGCAGT
GCCAACAAAGAGCTCGGTCGGTGTGAGTTCAAAACTGTCACCTCCAGACT
TCAGTGCAACAGCACCTGCAACCAGTACCAGCGATAGTATCAACCATGGC
CTCCTTACACCACTGAAACCTTTCACGGAGGGCTGCGCACTGCCAGCTTC
TGAAGGTGAACCGATCACGGGCAAACCATCAACCGATCTTTGGAGCAGCA
ACAGATAG
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