Sh_004L16_t000060

Overview
NameSh_004L16_t000060
Unique NameSh_004L16_t000060
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length594
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L16contigSh_004L16:80693..81755
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePlastocyanin-like domain containing protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L16_g000060Sh_004L16_g000060R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L16_p000060Sh_004L16_p000060R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L16_t000060 ID=Sh_004L16_t000060|Name=Sh_004L16_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=594bp
ATGCCAGCCATGGGCATTCCTACACTGATGTTCCGAGTAGCGATCGCCGC
TTTAGCCGTAACGACCGCTGCAGCCGCAGGCTCGACAGCGAGCCCGAGCT
CCGCGGCCAATTCCACTTCGAGCCCGACCAAGAACACGACGGCGCCATTG
CCGCCGTTTGGCACGAACCACGCCGTGGGCGACGGCACGGGGTGGTTCTT
CGACTGGAAGGCGAACGCCTCGGCCGCCAACTACTCCGCCTGGGCTGCGA
ACCGCACCTTCTACCTCGGCGACTACCTCAGTGAGCTCTGCAGCGCCGGC
GTCGCGGCGAGCGGCGGCGGCAGCGGGTGGAAGCCGGAGGGGGCGTTCCT
CGCCGTGATGCTCACGGCGGAGGGCGCCAACTACTTCTTCTCCGACGCCT
GGAACGGGGAGCACTGCCAGAATGGGATGCGGTTTCAGGTCAGCGTGGTG
CGCGGCCGCGGTCTCCCGTCGGTGCCGCCGTCGTACTACGAGCCGCTCTC
CGGCGCGGCGCCGGCGGGGACGCGGCGCGGCGGAACTGTGGCCGTGTGGG
TCGTTGCGATGGCTGCAGCCTTTGCTGCGTTTGTGTTTTCTTGA
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protein sequence of Sh_004L16_p000060

>Sh_004L16_p000060 ID=Sh_004L16_p000060|Name=Sh_004L16_p000060|organism=R570 Sugarcane cultivar|type=polypeptide|length=198bp
MPAMGIPTLMFRVAIAALAVTTAAAAGSTASPSSAANSTSSPTKNTTAPL
PPFGTNHAVGDGTGWFFDWKANASAANYSAWAANRTFYLGDYLSELCSAG
VAASGGGSGWKPEGAFLAVMLTAEGANYFFSDAWNGEHCQNGMRFQVSVV
RGRGLPSVPPSYYEPLSGAAPAGTRRGGTVAVWVVAMAAAFAAFVFS*
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mRNA from alignment at Sh_004L16:80693..81755+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L16_t000060 ID=Sh_004L16_t000060|Name=Sh_004L16_t000060|organism=R570 Sugarcane cultivar|type=mRNA|length=1063bp|location=Sequence derived from alignment at Sh_004L16:80693..81755+ (R570 Sugarcane cultivar)
GATGCCAGCCATGGGCATTCCTACACTGATGTTCCGAGTAGCGATCGCCG CTTTAGCCGTAACGACCGCTGCAGCCGCAGGCTCGACAGCGAGCCCGAGC TCCGCGGCCAATTCCACTTCGAGCCCGACCAAGAACACGACGGCGCCATT GCCGCCGTTTGGCACGAACCACGCCGTGGGCGACGGCACGGGGTGGTTCT TCGACTGGAAGGCGAACGCCTCGGCCGCCAACTACTCCGCCTGGGCTGCG AACCGCACCTTCTACCTCGGCGACTACCTCAGTGAGTTTCGATCAGCTTC CCAGTCCAAAGTCCAAACTGACATGTCTGACTCTGACGTGTGTGTGACGT GCTCAATATATCGCAAGGCTTCATGACGGACACGGCCAACACGGTGGTGC ACACGACGAACGCCACGGTCTACAGGCCAGGGAAAAATTTATCGGCGATA AAATTTCGATAAATCCGATAATTCCGTTTATCGCTGAGGTCCGATAAATT TTATTTATTACTGAGATTCCAAATTTCACTAGTCTACCTACGTGAAAGTG TGATAATCTCTTATATCAATACTATTATGTGCTAGTTCTTAATATTAAAT GCTTTAGAAACAACTTATATAATTTTCTAGATAAATTAAGTATTTTTTGT TTTATTTTTTACCGAGAAATTTTCCGATAAATCCGATAAACCCGTTTATC AGTGACGTCCGGTATTTTTTTTTTTGCTATCGGTAATGTGAACCTTGCTA CAGGCTCTGCAGCGCCGGCGTCGCGGCGAGCGGCGGCGGCAGCGGGTGGA AGCCGGAGGGGGCGTTCCTCGCCGTGATGCTCACGGCGGAGGGCGCCAAC TACTTCTTCTCCGACGCCTGGAACGGGGAGCACTGCCAGAATGGGATGCG GTTTCAGGTCAGCGTGGTGCGCGGCCGCGGTCTCCCGTCGGTGCCGCCGT CGTACTACGAGCCGCTCTCCGGCGCGGCGCCGGCGGGGACGCGGCGCGGC GGAACTGTGGCCGTGTGGGTCGTTGCGATGGCTGCAGCCTTTGCTGCGTT TGTGTTTTCTTGA
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Coding sequence (CDS) from alignment at Sh_004L16:80693..81755+

>Sh_004L16_t000060 ID=Sh_004L16_t000060|Name=Sh_004L16_t000060|organism=R570 Sugarcane cultivar|type=CDS|length=594bp|location=Sequence derived from alignment at Sh_004L16:80693..81755+ (R570 Sugarcane cultivar)
ATGCCAGCCATGGGCATTCCTACACTGATGTTCCGAGTAGCGATCGCCGC
TTTAGCCGTAACGACCGCTGCAGCCGCAGGCTCGACAGCGAGCCCGAGCT
CCGCGGCCAATTCCACTTCGAGCCCGACCAAGAACACGACGGCGCCATTG
CCGCCGTTTGGCACGAACCACGCCGTGGGCGACGGCACGGGGTGGTTCTT
CGACTGGAAGGCGAACGCCTCGGCCGCCAACTACTCCGCCTGGGCTGCGA
ACCGCACCTTCTACCTCGGCGACTACCTCAGTGAGCTCTGCAGCGCCGGC
GTCGCGGCGAGCGGCGGCGGCAGCGGGTGGAAGCCGGAGGGGGCGTTCCT
CGCCGTGATGCTCACGGCGGAGGGCGCCAACTACTTCTTCTCCGACGCCT
GGAACGGGGAGCACTGCCAGAATGGGATGCGGTTTCAGGTCAGCGTGGTG
CGCGGCCGCGGTCTCCCGTCGGTGCCGCCGTCGTACTACGAGCCGCTCTC
CGGCGCGGCGCCGGCGGGGACGCGGCGCGGCGGAACTGTGGCCGTGTGGG
TCGTTGCGATGGCTGCAGCCTTTGCTGCGTTTGTGTTTTCTTGA
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