Sh_004L19_t000010

Overview
NameSh_004L19_t000010
Unique NameSh_004L19_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L19contigSh_004L19:819..7886
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NotePutative glucan 1,3-alpha-glucosidase
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L19_g000010Sh_004L19_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L19_p000010Sh_004L19_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L19_t000010 ID=Sh_004L19_t000010|Name=Sh_004L19_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1128bp
ATGAACTCTGTTTTCACTTGGAACACGGATGCTTGGGCTTATGGACCAGG
AACCACTTCATTGTACCAGTCACACCCTTGGGTGCTGGCTGTCCTCCCTG
ATGGGAAGGCATTGGGTGTCCTTGCTGACACCACTTTGCCGTGTGAGATT
GACTTAAGACAAGAATCCACTATAAAATTCTCGGTCTCATCTGCCGACCC
TGTCATTACTTTTGGGCCACTGAATACACCAGCTGAAGTTATCACATCTT
TGTCTCATGCAATTGGAACTGTGTGCATGCCTCCGAAGTGGTCACTTGGC
TATCATCAATGTCGTTATAGTTACATGTCTTCTGAGAAAGTGCTGAAGAG
AGAAAGGCATTCCTGTGATGTTATCTGGATGGATATCGACTATATGGACG
GTTTTAGGTGCTTCACGTTTGATAGCAACCGCTTCTACAATCCAAAATCA
ATGGTTGATGATCTCCATTCCATCGGATGCAAAGCAATCTGGATGCTTGA
CCCAGGAATCAAGAATGAGGAGGGTTACTTTGTGTGCGAAAGTGGTTCAG
AAATGGATGTTTGGGTTCAAAAGGCAGATGGCAGCCCATTTATTGGGAAA
GTATGGCCTGGTGATTGTGTTTTCCCTGATTTTACCTCGAAAAGAGCACG
TGCCTGGTGGGCTAGTTTGGTAAGGGACTTCATCTCCAATGGTGTTGACG
GAATATGGAATGATATGAACGAGCCTGCTGTTGCCGATACTAATACAAAG
ACAATGCCTGAAAGCAATATCCATAGGGGAGATGCTGATATCGGCGGCAC
CCAGAACCATCCATACTATCACAATGTATATGTGTTGTTCCTCTGCCGAG
GATTAGCTGCATTGTCAATGCAATGTTCACATAATTTTCTATTTCATGTC
TATGGAATGCTCATGGCAAGATCTACTTACGAAGGCATGGTGTTGGCCAA
TGCTTCTAAACGACCATTTGTTCTTACACGAGCTGGTTTTATAGGAAGCC
AGCGGTATGCCGCAACATGGACGGGTGATAACATGTCAACTTGGGAGCAT
TTACACATGAGTTTGTCAATGATTCTTCAATTGGTAGGCGAATTATTTGT
TCCATGTATCCAAAAAGTTCCACCTTAA
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protein sequence of Sh_004L19_p000010

>Sh_004L19_p000010 ID=Sh_004L19_p000010|Name=Sh_004L19_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=376bp
MNSVFTWNTDAWAYGPGTTSLYQSHPWVLAVLPDGKALGVLADTTLPCEI
DLRQESTIKFSVSSADPVITFGPLNTPAEVITSLSHAIGTVCMPPKWSLG
YHQCRYSYMSSEKVLKRERHSCDVIWMDIDYMDGFRCFTFDSNRFYNPKS
MVDDLHSIGCKAIWMLDPGIKNEEGYFVCESGSEMDVWVQKADGSPFIGK
VWPGDCVFPDFTSKRARAWWASLVRDFISNGVDGIWNDMNEPAVADTNTK
TMPESNIHRGDADIGGTQNHPYYHNVYVLFLCRGLAALSMQCSHNFLFHV
YGMLMARSTYEGMVLANASKRPFVLTRAGFIGSQRYAATWTGDNMSTWEH
LHMSLSMILQLVGELFVPCIQKVPP*
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mRNA from alignment at Sh_004L19:819..7886-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L19_t000010 ID=Sh_004L19_t000010|Name=Sh_004L19_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=7068bp|location=Sequence derived from alignment at Sh_004L19:819..7886- (R570 Sugarcane cultivar)
ATGAACTCTGTTTTGTATTGACTCTTCTTTTGATATGTTCTCTCTCTGAA AGTTAAAGAAACATTACCTACATGTTCTCTTTTTTTAACATGGCAGCTTC CTTCTGGGGCATCTTTCTATGGCACCGGTGAAGCAAGCGGCCCACTTGAA AGAACTGGGAAACGAATACAGAACCTGACCAAAGAAATTATAAAATATAC TTTGTTGACTTCTTTTATACTTCCTTTATTTTAAATTATAAGACATTTTG GTTTTTCTAGATACACTGTTATATGTATCTAAGCTAGTCCGGTTGGTCTA GCGCTCCTGCGGCACCCTGCTGGCCGGGGATCGAACCCCCTTGGGGGCGA TTTATGCTGGCCGGAGGGGGAAAAAATCCCCTTGCCTTCTCTGCATTTTC CAAAGCACAGGTTGTGGATCGGCCCACTCACGGGGTTACAAGCCCCTGTG TGCGGGCAAGGTATGGGGTTCGGGGTTTTTTCTCGACTTGCGTGAGAGGT CTCCTTGAAGCGCAAAGCTCCGGGGCTGTCTAGCTATCGGAGAGTCGAGT TTTTTTTTTAAAAAAAGCCAAAACGTTTTATAATTTAGAATGGAGAGAAT AACTAGTTTTTGACTTGCCATGATATCTGTCAGGTTTTCACTTGGAACAC GGATGCTTGGGCTTATGGACCAGGAACCACTTCATTGTACCAGTCACACC CTTGGGTGCTGGCTGTCCTCCCTGATGGGAAGGCATTGGGTGTCCTTGCT GACACCACTTTGCCGTGTGAGGTATGCACGCATGCGTGACGCGTGAGTTC TGATGAGTGCCTTCGTTATATATAGCTCATACTAAGTTGACAGTGTAACT GATCTGTCTATTAACGTAATGATTGTTTACCATGGTACAGATTGACTTAA GACAAGAATCCACTATAAAATTCTCGGTCTCATCTGCCGACCCTGTCATT ACTTTTGGGCCACTGAATACACCAGCTGAAGTTATCACATCTTTGTCTCA TGCAATTGGTATTTCTCCCACAGTATTTAGCCAATCTCTTCTGCTACTAG CCTACTATTGTTATATGCTTTGAAACATGGCAGTGCTCTCTGGAGTAAAA TATTTTTAATTTTGTAAATGAATAATGAAATTGTATTCCTCTGCTCTGTT TTGAACAACGTAGTTGTAACGATCTTTAAATTCAGTTTAGCAATTCCATA GATACACGTTTGGAATCTTGATAACGTTGTGGTATGTTAGCATGCGCTAG GGGTGGAAATGGATGTTCAGTAATCCGTTTGTTTGATTCATATCCAGTAA AACTTAAATATTTTTTCTCGGACATGCAGAAGAGCTGCGCATCATTTCAT AAGAAGAAAGTGTACATAGAGTACAAGGGAAGAAGAATCCCACCCACACA CACACACACAAAGAAAAACACATCACCCTTTGAGAAAGAAAACATGACAA AACCTGAACATGGACTACTCGTATTAGCATCCATTTTTGGTAGGGATGCT AAATGGATGTACCCAAATCAAGCATTTCGTAACTTTTATATATCAAAATC TAGATTCGTATTCAAATAAATCATGCAATTGCCAACAAATTATACATATC AGTGAGGAATATACATATGATGGAACTATTTTAAAGCTATTTTTATTTTT ACTACTGGTATTAGTTTTTAATATCATTAACGATGTATCTATTGAAACTA TTGTTAAATATACCATTTTAAATTGTGCAAAATATATTTTATGGTAAAAA TTTTCTCTGATTAATATGTTGACATCAACCGTTTGTTGTAGATCTATGCA ACTTTTCATATATTAATGATCCAAGTTAAAAAAAAAGTTTGATTGGATAG AATCCTAAAATGACCTATTTTAGAACCGGAGGAAGTAACAACAAACTCAT AATCATAGGAAATAACTTTTAACTAATATAATGGTGCCATTTTGAATCAA ATAACCTTCATATTGCGAGACTATGTTAGTTAATGATTAAAAGTTTGATT TTTTGAAACACATTGTTTTGAAAATGTGCGGCCTACATTTTGGAAAAGAG GGACTACCTAAGATGCGTCACTGCACTTTTCACTATGTGAGAGGCCACAA CAAAAAACACACATTCAAGTTAATTGTTTTATGTTACATCAATTGCTATT TGCTACCTTGTCAATTAAGATGGGAGAATTTTCTAATGTAGGAACTGTGT GCATGCCTCCGAAGTGGTCACTTGGCTATCATCAATGTCGTTATAGTTAC ATGTCTTCTGAGAAAGTGCTGAAGGTATTAATTTCTTGCTAGAGCTAGGT CAAAATGGTGTCATATATATTTATTATTTTATATGTTTATTGTTACCACA AGTATGATCCAATAAAGTGTGGCATCTTATTAGACTTAAGAAATAAATAT GCAAACTTATATTTTGTTACAATGGGAGTATATGAAAAAAAATACTATGT ATTTGTGATTGATACATGGTGATAATTTGCCTAAGCCGTAGTAAAGAATT TTTATTATTGTTAGATTTTTTGTTCTTGATTTCTAAGTTTCAAAGTGGTT CCATTATTAGAAAAAAAAACGTTAGTCTGCTTCATGGGCCTATTGCAGCA TGCTAACCTTCTATTTATGTAGCTCCAATCTTTTTTGTGGATATTTTATC ATTTTATTAAGAAAAAAGGGGTAAGAGCCCTTACACAACATACACGCACG CACGCACACTCACGCGCACACTCATGCACGCACGCGCGCACACACATCAC CTCTGTTCATGTAATTCTTTGTTGGTCATACTATCTCAATTATCGATAAA TTTTCTATCACCTAACACCTCTGCTCTTTCTTTTTCATTTTAAGACATGA TACATCTTAATAATGATTGTTTAACAGGTTGTTAGAACATTTAGAGAGAA AGGCATTCCTGTGATGTTATCTGGATGGATATCGACTATATGGACGGTTT TAGGTGCTTCACGTTTGATAGCGTAAGTACTTGTTCTATCAAACATTCTT TGTTTGAACATCTACGCTTTGTTTATCCTCTACTCCCTTCATCCCACAAA AAGTGTTTGACCAAATATATAAATAAGAAATTATTGATATTTATGGTGCA TAATTGGTATCATTAGATGAATCGCTTAATATATTTTTATAATAAGCATA TTTAGAGATATAAATGTTGCTAATATGTTCTACAAATCTAGTCAAATTTA AGAAAGTTTAAGCAACGAACCCCATAGCAACACTTTTTTAGATGGATGGA GTACATGTTTACTGTCACACCCATTTAAAAACCAAATGGAATGCATACTC TTATGTGCGCCCAGAGATCAATCACACATAAGCTGACAAATTATAAAGGG AGTATCATCACAAATGTTATTACATCACAATTATTAACACATAGTCTTTA CACAAATGTAGCGGAAAGTAAAAAGGTAAATCTATCGTGGTAGCTCCAAG CACAGGCACATTGACTGGTTGACTGCAAGTCTAGTAATCTTCAGGGAAGT AGGAGTAGTAGTCACTATTTGCACCATCTGTTACCCATCCGGGATTTTTA TCCAAGTAAGAAAAATAAACAAGCGTAAGTACATCTCGTACTCAACAAGT GTAGCATGGGGTTCATGAGGCTCAAAGGCATGACATTGGTTTATCAGCAT GTAGCTTTTAGTTGACATAATTTTAGCATATCAATAGCATCAAGATGTCT CAATCTAAACAATAAACATATGATCCATGTGAAATGATTAACGAATAGCA AAAACATATTTATTATTAATGATCAACTATTTCATAAGGGTCCAAGGCCA CTCGTGACCGTGAGCACGGCTGTTATAATAGTTTTATACTCTGCAGAGGT TGTACACTTTCACTGTGAGTCGTGTTGCCCATATGCCCGGGTTAATTACT CCCAAAACATTTCCAAGGTGAGCAGGTAGGGAAACACTATGAAGTCTTTT GAAGGTTCGTCTAACAAGTTAGGGCCATTAGATTCACTCGGCAAACAATG TAGAGCCCTCCTTCCAAATGGCATAATGACACGCAGCCTATACTCATAAG GACAGAGGCCGCACTATACCCGATTCGTCAAGCCATTCTTATGCAAAAAA GGTTACCACTAACAAGCTAGAAAAGGTCCTTCTATATAATTAAAGCCAGA GCCATATAGCCCTCACAGTTGTACTGTAAATCCCGAATGTTCGCTTACAG ATAAGTCCTTAAGGAGAGAAACTAGAGCACTATAAAATAGCCCAATGCTC TAGCCCCCTTTTATCATATTACTAAAAAGTCATCTTTTAATGTTTATTGC ATATTCCATTAGTCAAATTACATGATCATAGTTCATGTTAAGCACTAGCA ATGCTACTCAATGCAATATAATAGGTGTCAAGGTATGAGATCAAAACTAA GTTATCCTTATCGAGGGAATATATGCATAATGATTATATTTGCTTATTGT GAATAGGACAACAAGGACAATCCCATGCTATACTTGCCTTGCTCAAACTG GTCCTGAAGATCTTGCTCGGAGAAAAACTCTTGGTCTCCAACGAATTGCT CACCGTCTATACTCGATCAACAATGGCAACAACATTCATCCAGAAACAAT CATGCAAAAACAAACAAGACTATAATTAGAACAGTACACCAACAGTAATA AAATAAGATAACAAGTCTTTAAAACGAATCTACAACTCGCTAGGATCACA CAGACGCGAATATCACGAAAAACGGAGCTAAAACGATGAAGTTATGAATT TACTAAGATTTCCTATAGAAAAATAATTACTTTAATTCAAAATCGAAATT AAAATGTTACAAACCTACTATACAGTAGTACTATCATGTAGAGCTCGCAA ATACGAACCTAACGCAATTTGAACGGGTCAAATCGGAGTTAAAATAGATA TTCTATGCATGAATTAATCTAGTGGCAAAACTGTAAATAAGTGAAAACGT ATTTTTGAATTTACCGAGATCAAACTACGCTTTATGAAAAGGAAAACGTA ATTCGGGAATATGCCATGGACTGCGGGTTCGATATATAAAAAGTACAGGG GCTCTTTAACAAAATTGCCGGCCGAACCGGTAACTTCTAATCCTGGCGGT AGATCTATGATCCGACGGTCCAGACAAGGAGATGAGGATGATGGCGGCGT TTTTGGTCGCCAACGGCGCCATGGCCGGAAAACGCGATACCTCGCTTCCG GGCATCATTCAACAAATGGAAAGCACCGGGAGGGAGTGCAGGACATGGCG AGCTCACCTAGAGCAAAATCGGAGGCGAGGGTAGTCCCAATGCGACGTGC GGCTTGGGATGGCGGGTGGCTAGGGTTGTGCGACGCGCGGAGGCACCACG GGATCAATGCGGTCGCATTGAGGGGGCAAGATGGAAGCGGCAGAGCTCAG CACCCGGTATATATAGCCCGAAGGTGCTCGAATACAAGGAAAGGAGAGAT TGGGAGACGGATTCGGCCGTCGGAGATTTTGGAAAGGAAATCCGACGTCG GCGTGAGGAGGAAGGTGATCCCGACATGCGGGCCCAGAGCGTCAGCAACG GAAGACGGACGCGGCGCGCGCGAGCTAGGCCAATGGCTGGGCTCGGCCCA AAGCGGGAAGTGGGGGGGAAAGGTGCAGACGGGCCACGCGGTGAAGCTGG GCCACGGAAGAAAATAAGGCCGGGCGGTGGAAAAGGGAGGTAACAGGCCG GGCCGGGAAACTGGGCCGAAACCGAAGGGGAGAAGAATTCCTTTTCTTTT TCTTTCCAAAATTTTCCAAAGCTATTTTCAAATGGAATTTTGAAATTCTA TTTGAGTTTTCAAAAAGAGCACACAATACAAAATATTATGCAGCAACATG AATGCTCAATCATGTTTCTACCCTTATATTTGATTTTAAATTAATAAAAA ATATTATTATTTCTAAGTTTGTATGCTCACAAAATTGCGTAAAATCTTAT TCACCTATTTTAAAATCATACCAAATTTTAGGGTGTTACATTTACAAAAT TACATTTCTTCAAAATTTTGAATAGTTCCATGTAATTGTTTTTCTCCTAT CATTATGTACGAAAGTGTAGTTGGATTGTCATTGATCCCGTGTTAGCTCC TGTTTGAGCATTTTGCTAATGCTATCTGATATATATACTACAGAACCGCT TCTACAATCCAAAATCAATGGTTGATGATCTCCATTCCATCGGATGCAAA GCAATCTGGATGCTTGACCCAGGAATCAAGAATGAGGAGGGTTACTTTGT GTGCGAAAGTGGTTCAGAAATGGATGTTTGGGTTCAAAAGGCAGATGGCA GCCCATTTATTGGTATGTTTTGCGAACCTTAAATGTTTCCTTCATTTTTT TCTTGAACTTAATTAGCATGATACCTTCATGTACTCTTTATGTTCTAAAC TCAGGGAAAGTATGGCCTGGTGATTGTGTTTTCCCTGATTTTACCTCGAA AAGAGCACGTGCCTGGTGGGCTAGTTTGGTAAGGGACTTCATCTCCAATG GTGTTGACGGAATATGGAATGATATGAACGAGCCTGCTGTTGCCGATGTA AATGATTTTTCATTATCTGTACGTTTATCTTATGTCTTGTTTGGTTTGTT TTCCCTTAGCAACTGAAAGTGATCGTATGAATTTAATCTGCAGACTAATA CAAAGACAATGCCTGAAAGCAATATCCATAGGGGAGATGCTGATATCGGC GGCACCCAGAACCATCCATACTATCACAATGTATATGTGTTGTTCCTCTG CCGAGGATTAGCTGCATTGTCAATGCAATGTTCACATAATTTTCTATTTC ATGTACATTTAATGCTTTTGTGCTTTTCAATTTTTAGGTCTATGGAATGC TCATGGCAAGATCTACTTACGAAGGCATGGTGTTGGCCAATGCTTCTAAA CGACCATTTGTTCTTACACGAGCTGGTTTTATAGGAAGCCAGCGGTATGC CGCAACATGGACGGGTGATAACATGTCAACTTGGGAGCATTTACACATGA GTTTGTCAATGATTCTTCAATTGGTAGGCGAATTATTTGTTCCATGTATC CAAAAAGTTCCACCTTAA
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Coding sequence (CDS) from alignment at Sh_004L19:819..7886-

>Sh_004L19_t000010 ID=Sh_004L19_t000010|Name=Sh_004L19_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=1128bp|location=Sequence derived from alignment at Sh_004L19:819..7886- (R570 Sugarcane cultivar)
ATGAACTCTGTTTTCACTTGGAACACGGATGCTTGGGCTTATGGACCAGG
AACCACTTCATTGTACCAGTCACACCCTTGGGTGCTGGCTGTCCTCCCTG
ATGGGAAGGCATTGGGTGTCCTTGCTGACACCACTTTGCCGTGTGAGATT
GACTTAAGACAAGAATCCACTATAAAATTCTCGGTCTCATCTGCCGACCC
TGTCATTACTTTTGGGCCACTGAATACACCAGCTGAAGTTATCACATCTT
TGTCTCATGCAATTGGAACTGTGTGCATGCCTCCGAAGTGGTCACTTGGC
TATCATCAATGTCGTTATAGTTACATGTCTTCTGAGAAAGTGCTGAAGAG
AGAAAGGCATTCCTGTGATGTTATCTGGATGGATATCGACTATATGGACG
GTTTTAGGTGCTTCACGTTTGATAGCAACCGCTTCTACAATCCAAAATCA
ATGGTTGATGATCTCCATTCCATCGGATGCAAAGCAATCTGGATGCTTGA
CCCAGGAATCAAGAATGAGGAGGGTTACTTTGTGTGCGAAAGTGGTTCAG
AAATGGATGTTTGGGTTCAAAAGGCAGATGGCAGCCCATTTATTGGGAAA
GTATGGCCTGGTGATTGTGTTTTCCCTGATTTTACCTCGAAAAGAGCACG
TGCCTGGTGGGCTAGTTTGGTAAGGGACTTCATCTCCAATGGTGTTGACG
GAATATGGAATGATATGAACGAGCCTGCTGTTGCCGATACTAATACAAAG
ACAATGCCTGAAAGCAATATCCATAGGGGAGATGCTGATATCGGCGGCAC
CCAGAACCATCCATACTATCACAATGTATATGTGTTGTTCCTCTGCCGAG
GATTAGCTGCATTGTCAATGCAATGTTCACATAATTTTCTATTTCATGTC
TATGGAATGCTCATGGCAAGATCTACTTACGAAGGCATGGTGTTGGCCAA
TGCTTCTAAACGACCATTTGTTCTTACACGAGCTGGTTTTATAGGAAGCC
AGCGGTATGCCGCAACATGGACGGGTGATAACATGTCAACTTGGGAGCAT
TTACACATGAGTTTGTCAATGATTCTTCAATTGGTAGGCGAATTATTTGT
TCCATGTATCCAAAAAGTTCCACCTTAA
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