Sh_004L19_t000030

Overview
NameSh_004L19_t000030
Unique NameSh_004L19_t000030
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L19contigSh_004L19:39631..40707
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteHypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L19_g000030Sh_004L19_g000030R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L19_p000030Sh_004L19_p000030R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L19_t000030 ID=Sh_004L19_t000030|Name=Sh_004L19_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=531bp
ATGAAGGAGGCCCACAACATGAGGGACGCAGTGGACAGCCTCTCAGACGA
TGTGCTTGCCGACATCTTCAGGTACCTCCCCGCCCGGTCCTTGTGCTGCT
ACAAGTGTGTCTATTGCTCCTGGAGGCGCGTCATCTCTGACTCCTATCAA
CGTAAGAAGCTTTCACAGACTATCGTCGACTTCTTCTATGGCAGCTGGTG
GAAGGGCAATCGCCACTTCACCAGCACCACCAACTATAGTACTGATAACT
GGAATTTGAAGCATGTTGTGGACATGGAGGAACTGTTTGGACGCATGAAT
ATTAAAGTTGGTTCTGAGCTTTGTGACGAGGAGTACAGAGTGATTACAGT
TCACCCAGAATGGAATTTCATTTTTCTTGTTGGGAAGGATAGAACATTGA
TTGCATATGACATGGACCGTATAAATGTTTATGTCATCCATGCCCGTGTC
ATCTGCTTTTGTAGATCAAGAGGGTGTTTTCATATGAACATGCCTTGCTA
TCTTTCTTATGTTCCCTTATTCATGGAGTAA
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protein sequence of Sh_004L19_p000030

>Sh_004L19_p000030 ID=Sh_004L19_p000030|Name=Sh_004L19_p000030|organism=R570 Sugarcane cultivar|type=polypeptide|length=177bp
MKEAHNMRDAVDSLSDDVLADIFRYLPARSLCCYKCVYCSWRRVISDSYQ
RKKLSQTIVDFFYGSWWKGNRHFTSTTNYSTDNWNLKHVVDMEELFGRMN
IKVGSELCDEEYRVITVHPEWNFIFLVGKDRTLIAYDMDRINVYVIHARV
ICFCRSRGCFHMNMPCYLSYVPLFME*
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mRNA from alignment at Sh_004L19:39631..40707-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L19_t000030 ID=Sh_004L19_t000030|Name=Sh_004L19_t000030|organism=R570 Sugarcane cultivar|type=mRNA|length=1077bp|location=Sequence derived from alignment at Sh_004L19:39631..40707- (R570 Sugarcane cultivar)
ATGAAGGAGGCCCACAACATGAGGGACGCAGTGGACAGCCTCTCAGACGA TGTGCTTGCCGACATCTTCAGGTACCTCCCCGCCCGGTCCTTGTGCTGCT ACAAGTGTGTCTATTGCTCCTGGAGGCGCGTCATCTCTGACTCCTATCAA CGTAAGAAGCTTTCACAGACTATCGTCGACTTCTTCTATGGCAGCTGGTG GAAGGGCAATCGCCACTTCACCAGCACCACCAGTGAATGACCCTCCTTGT CCTTCTTGCCCTCCCCCTTAAAAAGTCCTAGTCTTAGATTGTTGCAGCGG CCTTGTCCCTTGCTGGTGTGCTAGGCCTGATGGATTATGTCGCTATGTTG TCTGCAATCCAGCGACCGACAAATGACATGTACTACCGCGTAGCATCCTT TCTGTTGGTCAAGCTCGCTTAGGTTTTGAACCAACGTCCTCGCACTTCCA TGTGATTGAATTTGTTGAGGTGGAGGGTGCGTGCGTAGGTGTAGAGATCT ACTCATCTAAAACTATAGCATGGATCTTTAAGGAATCTGAATGAGGTGAG GGTAGTATTGTTCTACGTTCAAAATCGAGAAGTATTTTTCTTAATGATTT ATGTGCACATGGTTGAGTACTCTGCGATAGTTGCTGTGGATATAGAGGGA AAGACATGGTGGACAATTCATAAACCAGGTGGTGCTAAAATGTCCATCCA TCAAGCTCAGGGGTCACCTATGTGTGTGCTGTGCTGATTTTCGCAATAGG TCTTGGCTTTTAGTGTGGATACTTGAAGACTATAGTACTGATAACTGGAA TTTGAAGCATGTTGTGGACATGGAGGAACTGTTTGGACGCATGAATATTA AAGTTGGTTCTGAGCTTTGTGACGAGGAGTACAGAGTGATTACAGTTCAC CCAGAATGGAATTTCATTTTTCTTGTTGGGAAGGATAGAACATTGATTGC ATATGACATGGACCGTATAAATGTTTATGTCATCCATGCCCGTGTCATCT GCTTTTGTAGATCAAGAGGGTGTTTTCATATGAACATGCCTTGCTATCTT TCTTATGTTCCCTTATTCATGGAGTAA
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Coding sequence (CDS) from alignment at Sh_004L19:39631..40707-

>Sh_004L19_t000030 ID=Sh_004L19_t000030|Name=Sh_004L19_t000030|organism=R570 Sugarcane cultivar|type=CDS|length=531bp|location=Sequence derived from alignment at Sh_004L19:39631..40707- (R570 Sugarcane cultivar)
ATGAAGGAGGCCCACAACATGAGGGACGCAGTGGACAGCCTCTCAGACGA
TGTGCTTGCCGACATCTTCAGGTACCTCCCCGCCCGGTCCTTGTGCTGCT
ACAAGTGTGTCTATTGCTCCTGGAGGCGCGTCATCTCTGACTCCTATCAA
CGTAAGAAGCTTTCACAGACTATCGTCGACTTCTTCTATGGCAGCTGGTG
GAAGGGCAATCGCCACTTCACCAGCACCACCAACTATAGTACTGATAACT
GGAATTTGAAGCATGTTGTGGACATGGAGGAACTGTTTGGACGCATGAAT
ATTAAAGTTGGTTCTGAGCTTTGTGACGAGGAGTACAGAGTGATTACAGT
TCACCCAGAATGGAATTTCATTTTTCTTGTTGGGAAGGATAGAACATTGA
TTGCATATGACATGGACCGTATAAATGTTTATGTCATCCATGCCCGTGTC
ATCTGCTTTTGTAGATCAAGAGGGTGTTTTCATATGAACATGCCTTGCTA
TCTTTCTTATGTTCCCTTATTCATGGAGTAA
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