Sh_004L19_t000040

Overview
NameSh_004L19_t000040
Unique NameSh_004L19_t000040
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length1239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L19contigSh_004L19:51644..52883
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteReceptor-like serine/threonine-protein kinase SD1-7
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L19_g000040Sh_004L19_g000040R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L19_p000040Sh_004L19_p000040R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L19_t000040 ID=Sh_004L19_t000040|Name=Sh_004L19_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1239bp
ATGAGCCTTTGGGCATGGCGCCTCGGCCTCGGCCTCCTCCTCTCCTCCTT
GCTGCCACTGCCACCGTTGGCTACTGGTGACAGCACCTACGCCACGGTCT
GCGGCAAAACCGGCAAGTACAAGATCAACAGCACCTACCAAGACAACGTC
CAGTACGTTACCAACTACCTCGTCAACTACCCTACCTTCACCGCCGGCAC
GGGGTTTGCGAGCACGAGCTACGGCGCCGCCCCCGACGTGGTGTACGGCC
TCGGCCTTTGCCGTGGGGACACCCCGGACAACGTCACCTGCTACGAGTGC
CTCTCCACGGCTTCCGAGATGGCGCCGCTGCTCTGCCCGCACGACAAAGA
CGCGACCCTGTTCTATGACGGCTGCATCATGCGCATCTCTAACCAGGACT
TCCTGGGAACCATGGACAACGAGCCCGTGGTCGTGCTCAACGAAACCATG
ACGAAACCGGCCGCGCTGGTCAGCAGCTTCGATGCCCTGGTGGGCCGCCT
CATGAACAAGACGGCGGAGCATGCGGCGGCGAGCAGCATCCCCACCAAGA
AGATGGCCACCGGTGAGGCCGTGTTCGACACTGACGCGGGGGACGATCAG
CCGACAAAGGTGTACAGCTTGGTGCAGTGCACGCCCGACCTGACTCCAGC
GGGGTGCAGTCGGTGCCTCGAGCATGTCCTGGGCATCTTGGCACGCAGGA
CGCCTGGCTCTCTGGGAGAGAGGGTGGCAGGGGTGAGGTGCAACCTCCGG
TTCCAGGTGTACCCGTTCTATGTTGGCGAGGCCATGGTAGTCTTGGAGGG
CTTGGGTTCGGCGGCACCATCACCTGCGCCGATGTCGTCAAGGCCACTGC
CGCCTCCCAGTCCCAGGACGGTGACGCCGCCGGACGTCCGGATCCGGGCG
CTAGCATCCGGACGCGCCGCCGGAGAAGGATTCCAGCCTGCCCCCGCTTC
CACCCCCGAACGCAGAACCCGCAACGTCCCCACGCGCGCGCGGGGACGAA
TCGAACACAACCCGGCCGCGCGCGGGAATCCGCTCCTCTCATCTCCAGAC
CTAACGCGGAACCCGCAACGTCCCCCACGCGAGTGGGGCGACGGATTGAA
CGCAACCCGGCCACGTGCGGGGATCCGCTCCCCTCATCTCCAGACCTTCG
TCATGCCCCCAAAGCAACCATCGCCCCCTCCCCACACTGCAACATCCTCA
CCCCGCAAACTGCATCTTGCAGCACCATGCAGACGCTGA
back to top

protein sequence of Sh_004L19_p000040

>Sh_004L19_p000040 ID=Sh_004L19_p000040|Name=Sh_004L19_p000040|organism=R570 Sugarcane cultivar|type=polypeptide|length=413bp
MSLWAWRLGLGLLLSSLLPLPPLATGDSTYATVCGKTGKYKINSTYQDNV
QYVTNYLVNYPTFTAGTGFASTSYGAAPDVVYGLGLCRGDTPDNVTCYEC
LSTASEMAPLLCPHDKDATLFYDGCIMRISNQDFLGTMDNEPVVVLNETM
TKPAALVSSFDALVGRLMNKTAEHAAASSIPTKKMATGEAVFDTDAGDDQ
PTKVYSLVQCTPDLTPAGCSRCLEHVLGILARRTPGSLGERVAGVRCNLR
FQVYPFYVGEAMVVLEGLGSAAPSPAPMSSRPLPPPSPRTVTPPDVRIRA
LASGRAAGEGFQPAPASTPERRTRNVPTRARGRIEHNPAARGNPLLSSPD
LTRNPQRPPREWGDGLNATRPRAGIRSPHLQTFVMPPKQPSPPPHTATSS
PRKLHLAAPCRR*
back to top

mRNA from alignment at Sh_004L19:51644..52883+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L19_t000040 ID=Sh_004L19_t000040|Name=Sh_004L19_t000040|organism=R570 Sugarcane cultivar|type=mRNA|length=1240bp|location=Sequence derived from alignment at Sh_004L19:51644..52883+ (R570 Sugarcane cultivar)
TATGAGCCTTTGGGCATGGCGCCTCGGCCTCGGCCTCCTCCTCTCCTCCT TGCTGCCACTGCCACCGTTGGCTACTGGTGACAGCACCTACGCCACGGTC TGCGGCAAAACCGGCAAGTACAAGATCAACAGCACCTACCAAGACAACGT CCAGTACGTTACCAACTACCTCGTCAACTACCCTACCTTCACCGCCGGCA CGGGGTTTGCGAGCACGAGCTACGGCGCCGCCCCCGACGTGGTGTACGGC CTCGGCCTTTGCCGTGGGGACACCCCGGACAACGTCACCTGCTACGAGTG CCTCTCCACGGCTTCCGAGATGGCGCCGCTGCTCTGCCCGCACGACAAAG ACGCGACCCTGTTCTATGACGGCTGCATCATGCGCATCTCTAACCAGGAC TTCCTGGGAACCATGGACAACGAGCCCGTGGTCGTGCTCAACGAAACCAT GACGAAACCGGCCGCGCTGGTCAGCAGCTTCGATGCCCTGGTGGGCCGCC TCATGAACAAGACGGCGGAGCATGCGGCGGCGAGCAGCATCCCCACCAAG AAGATGGCCACCGGTGAGGCCGTGTTCGACACTGACGCGGGGGACGATCA GCCGACAAAGGTGTACAGCTTGGTGCAGTGCACGCCCGACCTGACTCCAG CGGGGTGCAGTCGGTGCCTCGAGCATGTCCTGGGCATCTTGGCACGCAGG ACGCCTGGCTCTCTGGGAGAGAGGGTGGCAGGGGTGAGGTGCAACCTCCG GTTCCAGGTGTACCCGTTCTATGTTGGCGAGGCCATGGTAGTCTTGGAGG GCTTGGGTTCGGCGGCACCATCACCTGCGCCGATGTCGTCAAGGCCACTG CCGCCTCCCAGTCCCAGGACGGTGACGCCGCCGGACGTCCGGATCCGGGC GCTAGCATCCGGACGCGCCGCCGGAGAAGGATTCCAGCCTGCCCCCGCTT CCACCCCCGAACGCAGAACCCGCAACGTCCCCACGCGCGCGCGGGGACGA ATCGAACACAACCCGGCCGCGCGCGGGAATCCGCTCCTCTCATCTCCAGA CCTAACGCGGAACCCGCAACGTCCCCCACGCGAGTGGGGCGACGGATTGA ACGCAACCCGGCCACGTGCGGGGATCCGCTCCCCTCATCTCCAGACCTTC GTCATGCCCCCAAAGCAACCATCGCCCCCTCCCCACACTGCAACATCCTC ACCCCGCAAACTGCATCTTGCAGCACCATGCAGACGCTGA
back to top

Coding sequence (CDS) from alignment at Sh_004L19:51644..52883+

>Sh_004L19_t000040 ID=Sh_004L19_t000040|Name=Sh_004L19_t000040|organism=R570 Sugarcane cultivar|type=CDS|length=1239bp|location=Sequence derived from alignment at Sh_004L19:51644..52883+ (R570 Sugarcane cultivar)
ATGAGCCTTTGGGCATGGCGCCTCGGCCTCGGCCTCCTCCTCTCCTCCTT
GCTGCCACTGCCACCGTTGGCTACTGGTGACAGCACCTACGCCACGGTCT
GCGGCAAAACCGGCAAGTACAAGATCAACAGCACCTACCAAGACAACGTC
CAGTACGTTACCAACTACCTCGTCAACTACCCTACCTTCACCGCCGGCAC
GGGGTTTGCGAGCACGAGCTACGGCGCCGCCCCCGACGTGGTGTACGGCC
TCGGCCTTTGCCGTGGGGACACCCCGGACAACGTCACCTGCTACGAGTGC
CTCTCCACGGCTTCCGAGATGGCGCCGCTGCTCTGCCCGCACGACAAAGA
CGCGACCCTGTTCTATGACGGCTGCATCATGCGCATCTCTAACCAGGACT
TCCTGGGAACCATGGACAACGAGCCCGTGGTCGTGCTCAACGAAACCATG
ACGAAACCGGCCGCGCTGGTCAGCAGCTTCGATGCCCTGGTGGGCCGCCT
CATGAACAAGACGGCGGAGCATGCGGCGGCGAGCAGCATCCCCACCAAGA
AGATGGCCACCGGTGAGGCCGTGTTCGACACTGACGCGGGGGACGATCAG
CCGACAAAGGTGTACAGCTTGGTGCAGTGCACGCCCGACCTGACTCCAGC
GGGGTGCAGTCGGTGCCTCGAGCATGTCCTGGGCATCTTGGCACGCAGGA
CGCCTGGCTCTCTGGGAGAGAGGGTGGCAGGGGTGAGGTGCAACCTCCGG
TTCCAGGTGTACCCGTTCTATGTTGGCGAGGCCATGGTAGTCTTGGAGGG
CTTGGGTTCGGCGGCACCATCACCTGCGCCGATGTCGTCAAGGCCACTGC
CGCCTCCCAGTCCCAGGACGGTGACGCCGCCGGACGTCCGGATCCGGGCG
CTAGCATCCGGACGCGCCGCCGGAGAAGGATTCCAGCCTGCCCCCGCTTC
CACCCCCGAACGCAGAACCCGCAACGTCCCCACGCGCGCGCGGGGACGAA
TCGAACACAACCCGGCCGCGCGCGGGAATCCGCTCCTCTCATCTCCAGAC
CTAACGCGGAACCCGCAACGTCCCCCACGCGAGTGGGGCGACGGATTGAA
CGCAACCCGGCCACGTGCGGGGATCCGCTCCCCTCATCTCCAGACCTTCG
TCATGCCCCCAAAGCAACCATCGCCCCCTCCCCACACTGCAACATCCTCA
CCCCGCAAACTGCATCTTGCAGCACCATGCAGACGCTGA
back to top