Sh_004L21_t000010

Overview
NameSh_004L21_t000010
Unique NameSh_004L21_t000010
TypemRNA
OrganismR570 Sugarcane cultivar (R570 (sugarcane cultivar))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sh_004L21contigSh_004L21:10019..11067
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Structural and functional annotation of S. officinarum2017-07-25
Properties
Property NameValue
NoteConserved hypothetical protein
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Sh_004L21_g000010Sh_004L21_g000010R570 Sugarcane cultivargene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Sh_004L21_p000010Sh_004L21_p000010R570 Sugarcane cultivarpolypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>Sh_004L21_t000010 ID=Sh_004L21_t000010|Name=Sh_004L21_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=402bp
ATGCAGTATGATATTAAAGATTGCAGCAATATTCTACTGCCGTATTATCA
AGATGGACTGTACACTTTATACATAATGGACATGGAAAACAAAATTGTCC
ACATTATGGATCCACTTACAGATATTGTATGTTCTAGGGGTTATGATCAA
AGCATGGCATATATACCTACATTCCACACTATTGCTAAAAGGTTCAGTCT
CGCCGTGGAAAAGACAAATTCTAATTGGAATGACAATATTTATCATTGGA
AGCGAAAATACTCTACATGTGTAACAAAGGTTCCAAATAATAAATACTGG
ATGGAATTCTTGGCCGACATTTTGACGAGTCCTGCAAATAAATGTTTCGA
TAACCTCCCTGAAGATCTCCAATATATGATTAAGGAGTTAGGCAGAATAT
AA
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protein sequence of Sh_004L21_p000010

>Sh_004L21_p000010 ID=Sh_004L21_p000010|Name=Sh_004L21_p000010|organism=R570 Sugarcane cultivar|type=polypeptide|length=134bp
MQYDIKDCSNILLPYYQDGLYTLYIMDMENKIVHIMDPLTDIVCSRGYDQ
SMAYIPTFHTIAKRFSLAVEKTNSNWNDNIYHWKRKYSTCVTKVPNNKYW
MEFLADILTSPANKCFDNLPEDLQYMIKELGRI*
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mRNA from alignment at Sh_004L21:10019..11067+

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Sh_004L21_t000010 ID=Sh_004L21_t000010|Name=Sh_004L21_t000010|organism=R570 Sugarcane cultivar|type=mRNA|length=1049bp|location=Sequence derived from alignment at Sh_004L21:10019..11067+ (R570 Sugarcane cultivar)
ATGCAGTATGATATTAAAGATTGCAGCAATGTAAGAAATGATATGTGTAC TCGCTCCTTTAAAAATCTATTAATTTTATTTAACACTTATAGCCTGTGCA TTTGTTTTTAGATTCTACTGCCGTATTATCAAGATGGACTGTACACTTTA TACATAATGGACATGGAAAACAAAATTGTCCACATTATGGATCCACTTAC AGATATTGTATGTTCTAGGGGTTATGATCAAAGCATGGCATATATACCTA CATTCCACACTATTGCTAAAAGGTTCAGTCTCGCCGTGGAAAAGACAAAT TCTAATTGGAATGACAATATTTATCATTGGAAGCGAAAATACTCTACATG TGTAACAAAGGTTCCAAATAATAAATACTGGTAATCACTTATAATATGTT TCATCTTTTTAAACACAAAAATAGTTATTTGATTTGTGTACACCAAATAA ACAAATGCTCTTCTCTAGGAATTTAGGAGGCTTTCTTGTATACAATTTCA TGAAATTGTGGGACGGCGTAAGATTGCCACCAATCAACAATGTAAGCATA TATATATATATATATATATATATATATATATATATATATAGCTAGCTGCA AAATAAGTTATTTTGTAGCCACCTCTATTTACGATAATTTTATATACTAA TTTACGATAATGTCAGTATATATTTACAATAGTTGAATTACTATAACACG TGGGGATATTTACCGTAATGTTATAGTAAATCACATAGTAAGGAGTTACT ATAATCTTGTAAATTAGTATAGCAATTATCGTAATTCAAAGTGGCTATAG AATAAGTTATTTTATAGCCAGCTGTAGGGTAATAGCTCTCTCTCTCTCTA TATATATTCTCTACCTATATTCCATACACTACACAGTAGGGAATTAATAA CTTAACCTATTATTATCTATCATGCACGGCTATCAACTTCACTGAGGATG GAATTCTTGGCCGACATTTTGACGAGTCCTGCAAATAAATGTTTCGATAA CCTCCCTGAAGATCTCCAATATATGATTAAGGAGTTAGGCAGAATATAA
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Coding sequence (CDS) from alignment at Sh_004L21:10019..11067+

>Sh_004L21_t000010 ID=Sh_004L21_t000010|Name=Sh_004L21_t000010|organism=R570 Sugarcane cultivar|type=CDS|length=402bp|location=Sequence derived from alignment at Sh_004L21:10019..11067+ (R570 Sugarcane cultivar)
ATGCAGTATGATATTAAAGATTGCAGCAATATTCTACTGCCGTATTATCA
AGATGGACTGTACACTTTATACATAATGGACATGGAAAACAAAATTGTCC
ACATTATGGATCCACTTACAGATATTGTATGTTCTAGGGGTTATGATCAA
AGCATGGCATATATACCTACATTCCACACTATTGCTAAAAGGTTCAGTCT
CGCCGTGGAAAAGACAAATTCTAATTGGAATGACAATATTTATCATTGGA
AGCGAAAATACTCTACATGTGTAACAAAGGTTCCAAATAATAAATACTGG
ATGGAATTCTTGGCCGACATTTTGACGAGTCCTGCAAATAAATGTTTCGA
TAACCTCCCTGAAGATCTCCAATATATGATTAAGGAGTTAGGCAGAATAT
AA
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